Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005994

Physical Location & Seq

Genomic Coordinates Forward (+)

43327514 .. 43330695

Gene Structure 3182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0284900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGAATGCATCTATTATATCCATTAAGGGACACAATGTTATTGCATCATCAAGAGATAATCCATTCACTCATAAGACAACTATGGTGTCTCAGAAACATATTACCATGGACTTTACTTACAATCTACCTCGTACTCGGAGTAGAAATGATGAGTCTGATCATATCCTCTTCTCAACAATTCTCTCTCCCTCTCTCGAAAGTTCTGCCGATCCAAGCCATCAGTTGTTGTTCAGAATGGCAGATTATCACGAGACCAATAAACACATTGAGATGTGGAAAACTAAGAAACTAATCAAGGGACTTGAAGCTGCGAGGGGTAATGGCACCAGCATGATTTCTCTCATCATTCCTCCCCGTGATCAAATCACTCGTGTTACTAAGATGTTGGATAATGAGTATGGAACTGCTTCAAATATCAAAAGCAGGGTGAACCGTCAGTCTGTTTTATGTGCAATTAAATCCGCTCTGCAGCGGCTCAAGGGTTACAACAAGCTTCCTCCTAATGGACTTGTGCTCTATATTGGAACAATTGTTACTGAAGACAGGAAGGAGAAAAAGATTGCAATTAATTTTGAGCCTTTCAAGCCCATCAATGTGTCTCTTTACCTCTGTGACAACAAGTTCCATGTTGAAGCTCTTAATGAACTCTTCGAATCTGATGAGAAATTTGGTTTCATTGTCATAGATGGTCATGGTAGTCTTTTTGGGACATTAAGTGGTAACACGAGGAAGGTGCTTCATAACTATACTGTTGACCTCCCAAAGAAACATGGAAGAGGAGGGCAATCAGCTCTTCGTTTTGCTCGTCTTGGAGAGGAGGCACGCCACAACTATGTTTCTAAGGCAGCAGAAAATGCCACTAAGCTTTTTATTAACCCTGCCACCAACAAGCCCAATGTTGCAGGAATAATACTGGCAGGATCAGCGGACTTCAAAATTGTGCTTAGTGGGTCAGACAAGTTTGATCCGCGTCTGCAGGCCAAAATACTGAATGTGGTGAGTGTTCGTTGTGGAGGAGAGAATGGTTTCGATCAGGCTATTGACTTGTCATCGAAGATTCTATCCAATGTGAAATTTGTGCAGGAGAAACGCTTGATGGAAAAATACTTTGAAGAGATTAGATTGGATACAGGAATGTATGTTTTTGGTTTAGATGATACACTAAAAGCTTTGGAGAGAGGTGCTGTGAAGATACTTATTGTGTCGGAAAGACTGGAAATTAGTAGGTATGAGCTGAAAAACTCTAGTACTGGTGAGATTGTTGTCAAACATCTTAACAAAGAGCAGGAAAACAATAAGAGCAACTTTTGGGATTCTGCCAACTCTAGAGAACTAGATATTCAAGACAAGATGTCATTGTTGGAGTGGTTCACTGACGAGTACAAGGGGTTTGGCTGTACGCTTGAGCTTGTCACCAACAAATCACAAGAGGGGTCACATTTCTGCCAAGGTTTTGGGGGCATTGGAGGAATTCTCCGCTACCAGCTTGATATGAGATCATTTGATGAGTTTTCTGATGATGAAGAAGTTTATGATGCTGGAGAAGTTTCTGATGATGCTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044419 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

521

Amino Acids

58.64

Weight (kDa)

7.24

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eRF1_1	PF03463	95 - 216	1.6e-50	eRF1 domain 1
eRF1_2	PF03464	222 - 355	1.6e-34	eRF1 domain 2
eRF1_3	PF03465	359 - 496	7.3e-29	eRF1 domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31750 AT4G31750 AT4G31750
fragaria_vesca	FvH4_2g41410 FvH4_2g41410 FvH4_2g41410
malus_domestica	MD08G1049700.v1.1 MD15G1044900.v1.1
prunus_persica	Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1 Prupe.1G398600_v2.0.a1
pyrus_communis	pycom08g04160 pycom15g04170
rosa_chinensis	RchiOBHm_Chr6g0299061
rosa_laevigata	RLG00000011464
rosa_multiflora	Rmu_sc0000981.1_g000008
rosa_roxburghii	Rroxscaffold_7G00169040
rosa_rugosa	Rorug06G0284500 Rorug06G0284600 Rorug06G0284700.1 Rorug06G0284800 Rorug06G0284900
rosa_samantha	Rh6AG396000 Rh6BG404600 Rh6CG410600 Rh6DG397200
rosa_wichuraiana	Rw6G034660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	323
AccBSI	CCGCTC	1 cut(s)	464
AccII	CGCG	1 cut(s)	970
AciI	CCGC	5 cut(s)	462, 472, 926, 968, 1477
AclWI	GGATC	3 cut(s)	203, 928, 959
AcsI	RAATTY	3 cut(s)	665, 1073, 1470
AcuI	CTGAAG	1 cut(s)	558
AfaI	GTAC	4 cut(s)	133, 1249, 1382, 1399
AfiI	CCNNNNNNNGG	1 cut(s)	503
AgsI	TTSAA	7 cut(s)	305, 411, 583, 632, 934, 1112, 1343
AhdI	GACNNNNNGTC	1 cut(s)	1351
AluBI	AGCT	9 cut(s)	308, 493, 635, 791, 865, 1169, 1234, 1408, 1486
AluI	AGCT	9 cut(s)	308, 493, 635, 791, 865, 1169, 1234, 1408, 1486
Alw21I	GWGCWC	1 cut(s)	516
Alw26I	GTCTC	3 cut(s)	93, 245, 603
AlwI	GGATC	3 cut(s)	203, 928, 959
AoxI	GGCC	1 cut(s)	978
ApeKI	GCWGC	3 cut(s)	308, 469, 845
ApoI	RAATTY	3 cut(s)	665, 1073, 1470
AseI	ATTAAT	1 cut(s)	567
Asp700I	GAANNNNTTC	2 cut(s)	406, 1025
AsuHPI	GGTGA	4 cut(s)	439, 1009, 1265, 1405
AsuII	TTCGAA	1 cut(s)	651
BanI	GGYRCC	1 cut(s)	323
BauI	CACGAG	3 cut(s)	248, 369, 724
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	516
BbvI	GCAGC	3 cut(s)	295, 481, 857
BccI	CCATC	4 cut(s)	225, 596, 680, 1090
BcgI	CGANNNNNNTGC	4 cut(s)	185, 219, 715, 749
BciVI	GTATCC	1 cut(s)	1120
BclI	TGATCA	2 cut(s)	157, 358
BcoDI	GTCTC	3 cut(s)	93, 245, 603
BfaI	CTAG	3 cut(s)	1245, 1326, 1334
BfmI	CTRYAG	2 cut(s)	467, 974
BfuI	GTATCC	1 cut(s)	1120
BisI	GCNGC	4 cut(s)	309, 470, 473, 846
BlsI	GCNGC	4 cut(s)	310, 471, 474, 847
BmcAI	AGTACT	1 cut(s)	1249
BmeRI	GACNNNNNGTC	1 cut(s)	1351
BmiI	GGNNCC	1 cut(s)	325
BmsI	GCATC	4 cut(s)	17, 53, 1525, 1546
BpiI	GAAGAC	1 cut(s)	546
BplI	GAGNNNNNCTC	2 cut(s)	1458, 1490
BpmI	CTGGAG	1 cut(s)	1560
Bpu14I	TTCGAA	1 cut(s)	651
BpuEI	CTTGAG	2 cut(s)	461, 1424
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	105, 1447
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse1I	ACTGG	3 cut(s)	918, 1218, 1255
BseDI	CCNNGG	2 cut(s)	105, 1447
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	3 cut(s)	918, 1218, 1255
BseRI	GAGGAG	3 cut(s)	792, 830, 1029
BseXI	GCAGC	3 cut(s)	295, 481, 857
BsgI	GTGCAG	1 cut(s)	1100
Bsh1236I	CGCG	1 cut(s)	970
BshFI	GGCC	1 cut(s)	980
BshNI	GGYRCC	1 cut(s)	323
BsiHKAI	GWGCWC	1 cut(s)	516
BslFI	GGGAC	3 cut(s)	42, 312, 721
BslI	CCNNNNNNNGG	1 cut(s)	503
BsmAI	GTCTC	3 cut(s)	93, 245, 603
BsmFI	GGGAC	3 cut(s)	42, 312, 721
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	980
Bso31I	GGTCTC	1 cut(s)	245
Bsp119I	TTCGAA	1 cut(s)	651
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	7 cut(s)	157, 208, 358, 920, 964, 1030, 1496
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	5 cut(s)	462, 472, 926, 968, 1477
BspANI	GGCC	1 cut(s)	980
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	970
BspLI	GGNNCC	1 cut(s)	325
BspMAI	CTGCAG	2 cut(s)	471, 978
BspPI	GGATC	3 cut(s)	203, 928, 959
BspQI	GCTCTTC	1 cut(s)	798
BspT104I	TTCGAA	1 cut(s)	651
BspT107I	GGYRCC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	464
BsrI	ACTGG	3 cut(s)	918, 1218, 1255
BssECI	CCNNGG	2 cut(s)	105, 1447
BssMI	GATC	7 cut(s)	157, 208, 358, 920, 964, 1030, 1496
BssSI	CACGAG	3 cut(s)	248, 369, 724
BssT1I	CCWWGG	2 cut(s)	105, 1447
Bst2BI	CACGAG	3 cut(s)	248, 369, 724
Bst4CI	ACNGT	2 cut(s)	434, 751
Bst6I	CTCTTC	5 cut(s)	173, 653, 769, 798, 1107
BstAPI	GCANNNNNTGC	1 cut(s)	854
BstBI	TTCGAA	1 cut(s)	651
BstC8I	GCNNGC	2 cut(s)	823, 978
BstDEI	CTNAG	6 cut(s)	90, 282, 378, 840, 861, 944
BstDSI	CCRYGG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	970
BstKTI	GATC	7 cut(s)	160, 211, 361, 923, 967, 1033, 1499
BstMAI	GTCTC	3 cut(s)	93, 245, 603
BstMBI	GATC	7 cut(s)	157, 208, 358, 920, 964, 1030, 1496
BstMWI	GCNNNNNNNGC	3 cut(s)	583, 854, 923
BstSFI	CTRYAG	2 cut(s)	467, 974
BstUI	CGCG	1 cut(s)	970
BstV1I	GCAGC	3 cut(s)	295, 481, 857
BstV2I	GAAGAC	1 cut(s)	546
BstXI	CCANNNNNNTGG	1 cut(s)	1454
BsuI	GTATCC	1 cut(s)	1120
BsuRI	GGCC	1 cut(s)	980
BtgI	CCRYGG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	1371
Cac8I	GCNNGC	2 cut(s)	823, 978
CseI	GACGC	1 cut(s)	959
Csp6I	GTAC	4 cut(s)	132, 1248, 1381, 1398
CviAII	CATG	5 cut(s)	106, 331, 626, 692, 770
CviQI	GTAC	4 cut(s)	132, 1248, 1381, 1398
DdeI	CTNAG	6 cut(s)	90, 282, 378, 840, 861, 944
DpnI	GATC	7 cut(s)	159, 210, 360, 922, 966, 1032, 1498
DpnII	GATC	7 cut(s)	157, 208, 358, 920, 964, 1030, 1496
DriI	GACNNNNNGTC	1 cut(s)	1351
Eam1104I	CTCTTC	5 cut(s)	173, 653, 769, 798, 1107
Eam1105I	GACNNNNNGTC	1 cut(s)	1351
EarI	CTCTTC	5 cut(s)	173, 653, 769, 798, 1107
Eco130I	CCWWGG	2 cut(s)	105, 1447
Eco31I	GGTCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	558
EcoRI	GAATTC	1 cut(s)	1470
EcoT14I	CCWWGG	2 cut(s)	105, 1447
EcoT22I	ATGCAT	1 cut(s)	10
ErhI	CCWWGG	2 cut(s)	105, 1447
FaeI	CATG	5 cut(s)	109, 334, 629, 695, 773
FalI	AAGNNNNNCTT	2 cut(s)	1289, 1321
FaqI	GGGAC	3 cut(s)	42, 312, 721
FatI	CATG	5 cut(s)	105, 330, 625, 691, 769
FbaI	TGATCA	2 cut(s)	157, 358
Fnu4HI	GCNGC	4 cut(s)	309, 470, 473, 846
Fsp4HI	GCNGC	4 cut(s)	309, 470, 473, 846
FspBI	CTAG	3 cut(s)	1245, 1326, 1334
GluI	GCNGC	4 cut(s)	309, 470, 473, 846
GsuI	CTGGAG	1 cut(s)	1560
HaeIII	GGCC	1 cut(s)	980
HgaI	GACGC	1 cut(s)	959
Hin1II	CATG	5 cut(s)	109, 334, 629, 695, 773
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	3 cut(s)	491, 863, 1167
HinfI	GANTC	4 cut(s)	152, 653, 1057, 1313
HphI	GGTGA	4 cut(s)	439, 1009, 1265, 1405
Hpy166II	GTNNAC	3 cut(s)	430, 754, 1371
Hpy188I	TCNGA	9 cut(s)	93, 138, 157, 233, 658, 955, 1207, 1516, 1552
Hpy188III	TCNNGA	5 cut(s)	51, 194, 248, 1326, 1343
Hpy8I	GTNNAC	3 cut(s)	430, 754, 1371
HpyAV	CCTTC	2 cut(s)	541, 724
HpyCH4III	ACNGT	2 cut(s)	434, 751
HpyCH4V	TGCA	8 cut(s)	8, 44, 452, 469, 563, 902, 976, 1081
HpyF10VI	GCNNNNNNNGC	3 cut(s)	583, 854, 923
HpyF3I	CTNAG	6 cut(s)	90, 282, 378, 840, 861, 944
Hsp92II	CATG	5 cut(s)	109, 334, 629, 695, 773
Ksp22I	TGATCA	2 cut(s)	157, 358
Kzo9I	GATC	7 cut(s)	157, 208, 358, 920, 964, 1030, 1496
LguI	GCTCTTC	1 cut(s)	798
Lsp1109I	GCAGC	3 cut(s)	295, 481, 857
LweI	GCATC	4 cut(s)	17, 53, 1525, 1546
MaeI	CTAG	3 cut(s)	1245, 1326, 1334
MaeIII	GTNAC	7 cut(s)	373, 482, 532, 611, 719, 1411, 1434
MalI	GATC	7 cut(s)	159, 210, 360, 922, 966, 1032, 1498
MbiI	CCGCTC	1 cut(s)	464
MboI	GATC	7 cut(s)	157, 208, 358, 920, 964, 1030, 1496
MboII	GAAGA	9 cut(s)	160, 551, 640, 785, 786, 1066, 1124, 1201, 1535
MfeI	CAATTG	1 cut(s)	528
MhlI	GDGCHC	1 cut(s)	516
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	3 cut(s)	366, 1185, 1341
Mph1103I	ATGCAT	1 cut(s)	10
MroXI	GAANNNNTTC	2 cut(s)	406, 1025
MseI	TTAA	7 cut(s)	24, 456, 567, 639, 713, 873, 1275
MslI	CAYNNNNRTG	4 cut(s)	269, 329, 593, 831
MspA1I	CMGCKG	2 cut(s)	472, 926
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	10
MvnI	CGCG	1 cut(s)	970
MwoI	GCNNNNNNNGC	3 cut(s)	583, 854, 923
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	7 cut(s)	157, 208, 358, 920, 964, 1030, 1496
NlaIII	CATG	5 cut(s)	109, 334, 629, 695, 773
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	3 cut(s)	611, 1411, 1434
NsiI	ATGCAT	1 cut(s)	10
NspV	TTCGAA	1 cut(s)	651
PciSI	GCTCTTC	1 cut(s)	798
PcsI	WCGNNNNNNNCGW	1 cut(s)	802
PctI	GAATGC	1 cut(s)	10
PdmI	GAANNNNTTC	2 cut(s)	406, 1025
PfeI	GAWTC	3 cut(s)	653, 1057, 1313
PkrI	GCNGC	4 cut(s)	310, 471, 474, 847
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PshBI	ATTAAT	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	325
PsrI	GAACNNNNNNTAC	2 cut(s)	517, 549
PstI	CTGCAG	2 cut(s)	471, 978
RsaI	GTAC	4 cut(s)	133, 1249, 1382, 1399
RsaNI	GTAC	4 cut(s)	132, 1248, 1381, 1398
RseI	CAYNNNNRTG	4 cut(s)	269, 329, 593, 831
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	7 cut(s)	24, 456, 567, 639, 713, 873, 1275
SatI	GCNGC	4 cut(s)	309, 470, 473, 846
Sau3AI	GATC	7 cut(s)	157, 208, 358, 920, 964, 1030, 1496
ScaI	AGTACT	1 cut(s)	1249
SchI	GAGTC	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	4 cut(s)	17, 53, 1525, 1546
SfcI	CTRYAG	2 cut(s)	467, 974
SfuI	TTCGAA	1 cut(s)	651
SmiMI	CAYNNNNRTG	4 cut(s)	269, 329, 593, 831
SmlI	CTYRAG	2 cut(s)	476, 1403
SmoI	CTYRAG	2 cut(s)	476, 1403
SsiI	CCGC	5 cut(s)	462, 472, 926, 968, 1477
SspMI	CTAG	3 cut(s)	1245, 1326, 1334
StyI	CCWWGG	2 cut(s)	105, 1447
TaaI	ACNGT	2 cut(s)	434, 751
TaqI	TCGA	4 cut(s)	195, 651, 1029, 1052
TatI	WGTACW	2 cut(s)	1247, 1380
TauI	GCSGC	1 cut(s)	475
TfiI	GAWTC	3 cut(s)	653, 1057, 1313
Tru1I	TTAA	7 cut(s)	24, 456, 567, 639, 713, 873, 1275
Tru9I	TTAA	7 cut(s)	24, 456, 567, 639, 713, 873, 1275
TscAI	CASTG	1 cut(s)	1378
TseFI	GTSAC	3 cut(s)	611, 1411, 1434
TseI	GCWGC	3 cut(s)	308, 469, 845
Tsp45I	GTSAC	3 cut(s)	611, 1411, 1434
TspDTI	ATGAA	5 cut(s)	17, 657, 664, 728, 1536
TspRI	CASTG	1 cut(s)	1378
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	3 cut(s)	665, 1073, 1470
XbaI	TCTAGA	1 cut(s)	1325
XmnI	GAANNNNTTC	2 cut(s)	406, 1025
XspI	CTAG	3 cut(s)	1245, 1326, 1334
ZrmI	AGTACT	1 cut(s)	1249
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.