MD15G1061500.v1.1

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0009579
Physical Location & Seq
Forward (+)
4134348 .. 4138643
4296 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1061500.v1.1.491

Sequence Viewer

Length: 945 bp
ATGGCCGACGAAGCCCAATACTCATCCGGTCCCGATTCAGGGAACAAGCGGAAGTACGAGGAGCAAACGCCGCCGTCCACCCGCAGAGTCACCGGCTTCTCGGCCCCCATCAAGTCATCGTCCCCCGACTCCGCGCCGACGTCGTACAGCAGCGTTCCTCCGCCCATGGAAGATTTCCAGCTGGCCAAGCAGAAGGCGCAGGAGATCGCAGCTCGGTTGTTGAACGGCGGGGATGCTAAGCGCTCTAGGGTTGACAATGGTGGCTCCGATTCTATTGACAAGGGCTTTAGCTCTGGTCCGCCAGATTTGAAGCCTCACTTCTCAAACCCAGCTCCTTCTTCAATCCCGGTATCTTACGGTGGTTTCCAGGGATCGAGCAAAAAGATTGAGGTTCCCAATGGCAGGGTTGGTGTCATTATTGGTAAAGGTGGGGAGACTATCAAGTATCTACAGACTCAGTCGGGAGCCAAGATTCAAGTTACCCGAGATTCTGATGCGGACCTCAATTTTCCAACTAGGATGGTGGAGCTCATGGGTACTCCGGAGCAGATCGCAAAGGCTGAGCATTTGATCAATGAAGTTCTTGCTGAGGCTGAATCAGGAGGTCCGGCCATAGCTTCTAGAAGGTTAACAGTACAAGCTGGCGGTGAACAATATGTTACAAAAATTCCTAACAACAAGGTTGGGCTTGTAATTGGTAAAGGAGGTGAAACAATAAAAAGTATGCAAGCTAGGACTGGAGCTCGTATCCAGGTTATTCCCTTGCATCTGCCACCTGGTGACACATCAACAGAAAGGACGCTACAGATTGATGGGACTACTGAACAAATTGAAGCTGCAAAACAGTTGGTAGCTGAAGTTATTAGTGAGGTATGTTTAATTTGTGTTTGCCTAAAAATTTGGCTTGTACGCCTCTCTGATGTATTTGTAGTCAGAGATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0019439 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0035925 GO:0036464 GO:0036477 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:1990904 GO:2000112 GO:2000113 GO:2000377 GO:2000378 GO:2000628
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

315

Amino Acids

33.47

Weight (kDa)

6.85

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 127 - 193 1.7e-18 KH domain
KH_1 PF00013 222 - 285 1.1e-19 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 143
AccII CGCG 1 cut(s) 134
AccIII TCCGGA 1 cut(s) 541
AciI CCGC 9 cut(s) 49, 71, 82, 132, 161, 228, 299, 497, 645
AclWI GGATC 1 cut(s) 379
AcoI YGGCCR 3 cut(s) 3, 183, 609
AcsI RAATTY 2 cut(s) 666, 897
AcuI CTGAAG 1 cut(s) 876
AcyI GRCGYC 1 cut(s) 140
AdeI CACNNNGTG 1 cut(s) 779
AfaI GTAC 5 cut(s) 56, 146, 538, 636, 909
AfeI AGCGCT 1 cut(s) 242
AfiI CCNNNNNNNGG 3 cut(s) 38, 39, 402
AgsI TTSAA 5 cut(s) 223, 310, 342, 476, 833
AjnI CCWGG 3 cut(s) 366, 750, 775
Alw21I GWGCWC 2 cut(s) 531, 745
Alw26I GTCTC 1 cut(s) 428
AlwI GGATC 1 cut(s) 379
Ama87I CYCGRG 1 cut(s) 483
Aor13HI TCCGGA 1 cut(s) 541
Aor51HI AGCGCT 1 cut(s) 242
AoxI GGCC 4 cut(s) 3, 102, 183, 609
ApeKI GCWGC 3 cut(s) 150, 209, 836
ApoI RAATTY 2 cut(s) 666, 897
AspLEI GCGC 3 cut(s) 136, 199, 243
AspS9I GGNCC 5 cut(s) 29, 103, 296, 499, 605
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 4 cut(s) 82, 659, 719, 791
AvaI CYCGRG 1 cut(s) 483
AvaII GGWCC 4 cut(s) 29, 296, 499, 605
BalI TGGCCA 1 cut(s) 185
BanII GRGCYC 2 cut(s) 531, 745
Bbv12I GWGCWC 2 cut(s) 531, 745
BbvCI CCTCAGC 1 cut(s) 588
BbvI GCAGC 3 cut(s) 162, 221, 823
BccI CCATC 3 cut(s) 116, 514, 806
BceAI ACGGC 2 cut(s) 58, 241
BciT130I CCWGG 3 cut(s) 368, 752, 777
BciVI GTATCC 1 cut(s) 758
BclI TGATCA 1 cut(s) 570
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 1 cut(s) 428
BfaI CTAG 4 cut(s) 246, 516, 621, 732
BfmI CTRYAG 2 cut(s) 449, 803
BfoI RGCGCY 1 cut(s) 244
BfuI GTATCC 1 cut(s) 758
BisI GCNGC 4 cut(s) 71, 151, 210, 837
BlpI GCTNAGC 2 cut(s) 237, 561
BlsI GCNGC 4 cut(s) 72, 152, 211, 838
Bme1390I CCNGG 4 cut(s) 347, 368, 752, 777
Bme18I GGWCC 4 cut(s) 29, 296, 499, 605
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 5 cut(s) 29, 103, 296, 499, 605
BmiI GGNNCC 5 cut(s) 31, 105, 265, 393, 466
BmrFI CCNGG 4 cut(s) 347, 368, 752, 777
BmsI GCATC 3 cut(s) 223, 484, 775
BpmI CTGGAG 1 cut(s) 759
Bpu10I CCTNAGC 1 cut(s) 588
Bpu1102I GCTNAGC 2 cut(s) 237, 561
BpuMI CCSGG 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 165, 367
BsaWI WCCGGW 2 cut(s) 26, 541
Bsc4I CCNNNNNNNGG 3 cut(s) 38, 39, 402
Bse118I RCCGGY 1 cut(s) 92
Bse1I ACTGG 1 cut(s) 742
BseAI TCCGGA 1 cut(s) 541
BseBI CCWGG 3 cut(s) 368, 752, 777
BseDI CCNNGG 2 cut(s) 165, 367
BseGI GGATG 3 cut(s) 23, 238, 525
BseLI CCNNNNNNNGG 3 cut(s) 38, 39, 402
BseMII CTCAG 3 cut(s) 470, 552, 579
BseNI ACTGG 1 cut(s) 742
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 3 cut(s) 162, 221, 823
BseYI CCCAGC 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 4 cut(s) 5, 104, 185, 611
BsiHKAI GWGCWC 2 cut(s) 531, 745
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 5 cut(s) 27, 93, 347, 542, 608
BslFI GGGAC 3 cut(s) 15, 106, 829
BslI CCNNNNNNNGG 3 cut(s) 38, 39, 402
BsmAI GTCTC 1 cut(s) 428
BsmFI GGGAC 3 cut(s) 15, 106, 829
BsnI GGCC 4 cut(s) 5, 104, 185, 611
BsoBI CYCGRG 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 531, 745
Bsp13I TCCGGA 1 cut(s) 541
Bsp143I GATC 4 cut(s) 204, 371, 549, 570
Bsp1720I GCTNAGC 2 cut(s) 237, 561
Bsp19I CCATGG 1 cut(s) 165
BspACI CCGC 9 cut(s) 49, 71, 82, 132, 161, 228, 299, 497, 645
BspANI GGCC 4 cut(s) 5, 104, 185, 611
BspCNI CTCAG 3 cut(s) 469, 553, 580
BspEI TCCGGA 1 cut(s) 541
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 5 cut(s) 31, 105, 265, 393, 466
BspPI GGATC 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 92
BsrI ACTGG 1 cut(s) 742
BssAI RCCGGY 1 cut(s) 92
BssECI CCNNGG 2 cut(s) 165, 367
BssMI GATC 4 cut(s) 204, 371, 549, 570
BssNI GRCGYC 1 cut(s) 140
BssT1I CCWWGG 1 cut(s) 165
Bst2UI CCWGG 3 cut(s) 368, 752, 777
Bst4CI ACNGT 3 cut(s) 359, 634, 846
BstACI GRCGYC 1 cut(s) 140
BstC8I GCNNGC 3 cut(s) 183, 643, 729
BstDEI CTNAG 4 cut(s) 237, 456, 561, 588
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 3 cut(s) 23, 238, 525
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 3 cut(s) 136, 199, 243
BstKTI GATC 4 cut(s) 207, 374, 552, 573
BstMAI GTCTC 1 cut(s) 428
BstMBI GATC 4 cut(s) 204, 371, 549, 570
BstMWI GCNNNNNNNGC 4 cut(s) 11, 70, 187, 196
BstNI CCWGG 3 cut(s) 368, 752, 777
BstSCI CCNGG 4 cut(s) 345, 366, 750, 775
BstSFI CTRYAG 2 cut(s) 449, 803
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 3 cut(s) 162, 221, 823
BsuI GTATCC 1 cut(s) 758
BsuRI GGCC 4 cut(s) 5, 104, 185, 611
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 3 cut(s) 23, 238, 525
Cac8I GCNNGC 3 cut(s) 183, 643, 729
CfoI GCGC 3 cut(s) 136, 199, 243
Cfr10I RCCGGY 1 cut(s) 92
Cfr13I GGNCC 5 cut(s) 29, 103, 296, 499, 605
CseI GACGC 1 cut(s) 808
CsiI ACCWGGT 1 cut(s) 775
Csp6I GTAC 5 cut(s) 55, 145, 537, 635, 908
CviAII CATG 2 cut(s) 166, 532
CviQI GTAC 5 cut(s) 55, 145, 537, 635, 908
DdeI CTNAG 4 cut(s) 237, 456, 561, 588
DpnI GATC 4 cut(s) 206, 373, 551, 572
DpnII GATC 4 cut(s) 204, 371, 549, 570
DraIII CACNNNGTG 1 cut(s) 779
EaeI YGGCCR 3 cut(s) 3, 183, 609
EciI GGCGGA 2 cut(s) 150, 288
Ecl136II GAGCTC 2 cut(s) 529, 743
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 2 cut(s) 531, 745
Eco47I GGWCC 4 cut(s) 29, 296, 499, 605
Eco47III AGCGCT 1 cut(s) 242
Eco53kI GAGCTC 2 cut(s) 529, 743
Eco57I CTGAAG 1 cut(s) 876
Eco88I CYCGRG 1 cut(s) 483
EcoICRI GAGCTC 2 cut(s) 529, 743
EcoRII CCWGG 3 cut(s) 366, 750, 775
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 2 cut(s) 531, 745
ErhI CCWWGG 1 cut(s) 165
FaeI CATG 2 cut(s) 169, 535
FaiI YATR 6 cut(s) 167, 533, 614, 657, 725, 874
FalI AAGNNNNNCTT 2 cut(s) 302, 334
FaqI GGGAC 3 cut(s) 15, 106, 829
FatI CATG 2 cut(s) 165, 531
FauI CCCGC 2 cut(s) 89, 221
FbaI TGATCA 1 cut(s) 570
Fnu4HI GCNGC 4 cut(s) 71, 151, 210, 837
FokI GGATG 3 cut(s) 10, 245, 532
FriOI GRGCYC 2 cut(s) 531, 745
Fsp4HI GCNGC 4 cut(s) 71, 151, 210, 837
FspBI CTAG 4 cut(s) 246, 516, 621, 732
GlaI GCGC 3 cut(s) 135, 198, 242
GluI GCNGC 4 cut(s) 71, 151, 210, 837
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 1 cut(s) 759
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 4 cut(s) 5, 104, 185, 611
HapII CCGG 5 cut(s) 27, 93, 347, 542, 608
HgaI GACGC 1 cut(s) 808
HhaI GCGC 3 cut(s) 136, 199, 243
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 2 cut(s) 169, 535
Hin6I GCGC 3 cut(s) 134, 197, 241
HinP1I GCGC 3 cut(s) 134, 197, 241
HincII GTYRAC 2 cut(s) 253, 630
HindII GTYRAC 2 cut(s) 253, 630
HinfI GANTC 8 cut(s) 35, 87, 128, 269, 454, 472, 488, 596
HpaI GTTAAC 1 cut(s) 630
HpaII CCGG 5 cut(s) 27, 93, 347, 542, 608
HphI GGTGA 4 cut(s) 82, 659, 719, 791
Hpy166II GTNNAC 4 cut(s) 78, 253, 630, 650
Hpy188I TCNGA 4 cut(s) 268, 493, 919, 935
Hpy188III TCNNGA 5 cut(s) 32, 462, 542, 600, 621
Hpy8I GTNNAC 4 cut(s) 78, 253, 630, 650
Hpy99I CGWCG 3 cut(s) 11, 142, 145
HpyAV CCTTC 3 cut(s) 187, 345, 618
HpyCH4III ACNGT 3 cut(s) 359, 634, 846
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 3 cut(s) 727, 766, 839
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 70, 187, 196
HpyF3I CTNAG 4 cut(s) 237, 456, 561, 588
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 2 cut(s) 169, 535
HspAI GCGC 3 cut(s) 134, 197, 241
Kpn2I TCCGGA 1 cut(s) 541
Ksp22I TGATCA 1 cut(s) 570
KspAI GTTAAC 1 cut(s) 630
Kzo9I GATC 4 cut(s) 204, 371, 549, 570
LmnI GCTCC 7 cut(s) 61, 269, 337, 464, 526, 544, 740
Lsp1109I GCAGC 3 cut(s) 162, 221, 823
LweI GCATC 3 cut(s) 223, 484, 775
MabI ACCWGGT 1 cut(s) 775
MaeI CTAG 4 cut(s) 246, 516, 621, 732
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 4 cut(s) 88, 478, 658, 779
MalI GATC 4 cut(s) 206, 373, 551, 572
MboI GATC 4 cut(s) 204, 371, 549, 570
MboII GAAGA 2 cut(s) 182, 330
MhlI GDGCHC 2 cut(s) 531, 745
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 6 cut(s) 505, 666, 693, 828, 879, 897
MluNI TGGCCA 1 cut(s) 185
MlyI GAGTC 3 cut(s) 96, 122, 448
MmeI TCCRAC 1 cut(s) 536
Mox20I TGGCCA 1 cut(s) 185
MroI TCCGGA 1 cut(s) 541
MscI TGGCCA 1 cut(s) 185
MseI TTAA 3 cut(s) 629, 878, 943
Msp20I TGGCCA 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 5 cut(s) 27, 93, 347, 542, 608
MspR9I CCNGG 4 cut(s) 347, 368, 752, 777
MvaI CCWGG 3 cut(s) 368, 752, 777
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 4 cut(s) 11, 70, 187, 196
NciI CCSGG 1 cut(s) 347
NcoI CCATGG 1 cut(s) 165
NdeII GATC 4 cut(s) 204, 371, 549, 570
NlaIII CATG 2 cut(s) 169, 535
NlaIV GGNNCC 5 cut(s) 31, 105, 265, 393, 466
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 2 cut(s) 88, 779
PfeI GAWTC 5 cut(s) 35, 269, 472, 488, 596
PflFI GACNNNGTC 1 cut(s) 457
PkrI GCNGC 4 cut(s) 72, 152, 211, 838
PleI GAGTC 3 cut(s) 95, 122, 448
PpsI GAGTC 3 cut(s) 95, 122, 448
Psp124BI GAGCTC 2 cut(s) 531, 745
Psp6I CCWGG 3 cut(s) 366, 750, 775
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 3 cut(s) 366, 750, 775
PspN4I GGNNCC 5 cut(s) 31, 105, 265, 393, 466
PspPI GGNCC 5 cut(s) 29, 103, 296, 499, 605
PsyI GACNNNGTC 1 cut(s) 457
PvuII CAGCTG 1 cut(s) 181
RsaI GTAC 5 cut(s) 56, 146, 538, 636, 909
RsaNI GTAC 5 cut(s) 55, 145, 537, 635, 908
SacI GAGCTC 2 cut(s) 531, 745
SaqAI TTAA 3 cut(s) 629, 878, 943
SatI GCNGC 4 cut(s) 71, 151, 210, 837
Sau3AI GATC 4 cut(s) 204, 371, 549, 570
Sau96I GGNCC 5 cut(s) 29, 103, 296, 499, 605
SchI GAGTC 3 cut(s) 96, 122, 448
ScrFI CCNGG 4 cut(s) 347, 368, 752, 777
SduI GDGCHC 2 cut(s) 531, 745
SexAI ACCWGGT 1 cut(s) 775
SfaNI GCATC 3 cut(s) 223, 484, 775
SfcI CTRYAG 2 cut(s) 449, 803
SinI GGWCC 4 cut(s) 29, 296, 499, 605
Sse9I AATT 6 cut(s) 505, 666, 693, 828, 879, 897
SsiI CCGC 9 cut(s) 49, 71, 82, 132, 161, 228, 299, 497, 645
SspMI CTAG 4 cut(s) 246, 516, 621, 732
SstI GAGCTC 2 cut(s) 531, 745
StyD4I CCNGG 4 cut(s) 345, 366, 750, 775
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 3 cut(s) 359, 634, 846
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 374
TasI AATT 6 cut(s) 505, 666, 693, 828, 879, 897
TatI WGTACW 1 cut(s) 634
TauI GCSGC 1 cut(s) 73
TfiI GAWTC 5 cut(s) 35, 269, 472, 488, 596
Tru1I TTAA 3 cut(s) 629, 878, 943
Tru9I TTAA 3 cut(s) 629, 878, 943
TseFI GTSAC 2 cut(s) 88, 779
TseI GCWGC 3 cut(s) 150, 209, 836
Tsp45I GTSAC 2 cut(s) 88, 779
TspDTI ATGAA 1 cut(s) 591
Tth111I GACNNNGTC 1 cut(s) 457
VpaK11BI GGWCC 4 cut(s) 29, 296, 499, 605
XapI RAATTY 2 cut(s) 666, 897
XbaI TCTAGA 1 cut(s) 620
XspI CTAG 4 cut(s) 246, 516, 621, 732
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.