pycom08g03570

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0009579
Physical Location & Seq
Forward (+)
2786113 .. 2787361
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g03570.1

Sequence Viewer

Length: 1206 bp
ATGGGAAGTACGCCATGGTTATTTGTGAGAATAATTTTATTGCAGAACCGTGTTAGAAATCCAGCAATGTCTGGAGGATACTCTCAGCAAGGTTATCAAGCACGACCTCCCTCAGGATGGGCTCCTTCTGGTCCCTCAATGCAACAACCTAGTTATGGATATGGACAGTCTGGAGGGTATTCTGCTCCACCACATCAGTATAATGCGTCTCAGCCTTCTTACCCAGGCTATCCTCCTCAACCAACATCTGGTGGCTATCCGTCCAGTTGGGACCAGTCAGCTGCTGCGCCAACCCAGCAGACTTCCCAGGGTGGTGGTTACGATTATTATGGCCAGCAACAACCTTCACATCAGCAGCAAAATCCTGGAGGTCCTGCTGCTCCTGCTGCTCCTGCTGATGGTGCTGGTTACAATTATGGCCCGCCGCCAGTTTCAGGCTATAATCAACAGGGACAAGGATATGCTCAAGATGGCTATGGTGGATATCATGCACCACCTCAATCTGGGTACGGTCAGCCACCGGCATATGATCAACAGCAGGGTTATTCTGCAGCAGGCTATGGTAATGTGAGTAACCCACCTCAAGATGGGCATACACCCTCTTATCGATCTCAGGGGGATTCAGCTCTGGTGCCTCCTGCTCAGCAAGGATACAATGCCGGTCAACAGCCTAGCCCTAACCCTGCTGGTTACCCACCCCAAGGTTCTACTCAGCCAGGTTATGGAGCACCCCCAACTTCTCAAACTGGTTATGGAAGCCAACCACCGGCTCAGCCTGCATATGGAGCTGGATATGGAGCACCACCAGCACAAAAGCCTCCTGCAAATCCTGCAGTTTATGGGCAAACTGCTCAGTCCCCCAGCACTCCAGGAGGCTATGGCCAGCCTGCACCTGTGCAGCCAGGATACCCGCATTCTCAGCCTCCAGCTTCTGGATATGCTCAGCCAGATCCTGTTACCCGTCCCCCTACATCTGGCTACGGTGCTGCAGCACCACAGACCGGATACGGGCCTCCATCCTATGGCGCACCACCAGCTGGCCAGCCAGGATATGGGCAGGTGCCACCACCCTACAACGCATCTTATGCACGAATGGGAACGCTCGTGGGACCTATGATGCTCCGCCACCTGCTTCACAGACTGCCCCCCCAAGTGGAGTTGCCAAAACTTCCCCTCAGAGTTGATGTGTTATGGCGTTTTGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0019439 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0035925 GO:0036464 GO:0036477 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:1990904 GO:2000112 GO:2000113 GO:2000377 GO:2000378 GO:2000628
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

402

Amino Acids

41.52

Weight (kDa)

8.72

Isoelectric Point (pI)

67.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1048, 1137
Acc36I ACCTGC 2 cut(s) 1048, 1137
AccB1I GGYRCC 2 cut(s) 631, 1060
AccB7I CCANNNNNTGG 6 cut(s) 248, 722, 932, 1022, 1037, 1052
AciI CCGC 4 cut(s) 422, 425, 911, 1123
AclWI GGATC 1 cut(s) 944
AcoI YGGCCR 3 cut(s) 331, 880, 1039
AfaI GTAC 2 cut(s) 10, 509
AjnI CCWGG 7 cut(s) 223, 306, 364, 715, 868, 901, 1045
AluBI AGCT 5 cut(s) 281, 626, 788, 929, 1037
AluI AGCT 5 cut(s) 281, 626, 788, 929, 1037
Alw21I GWGCWC 2 cut(s) 730, 802
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 1 cut(s) 944
AlwNI CAGNNNCTG 3 cut(s) 284, 932, 953
AoxI GGCC 5 cut(s) 331, 418, 880, 1010, 1039
ApeKI GCWGC 9 cut(s) 281, 284, 355, 377, 386, 551, 898, 986, 989
AspLEI GCGC 2 cut(s) 289, 1028
AspS9I GGNCC 6 cut(s) 131, 271, 371, 419, 1010, 1109
AvaII GGWCC 4 cut(s) 131, 271, 371, 1109
AxyI CCTNAGG 1 cut(s) 112
BalI TGGCCA 3 cut(s) 333, 882, 1041
BanI GGYRCC 2 cut(s) 631, 1060
BanII GRGCYC 1 cut(s) 124
BauI CACGAG 1 cut(s) 1103
Bbv12I GWGCWC 2 cut(s) 730, 802
BbvI GCAGC 9 cut(s) 268, 271, 364, 367, 373, 563, 910, 973, 1001
BccI CCATC 5 cut(s) 111, 392, 464, 581, 1024
BciT130I CCWGG 7 cut(s) 225, 308, 366, 717, 870, 903, 1047
BciVI GTATCC 4 cut(s) 71, 644, 899, 998
BclI TGATCA 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 2 cut(s) 150, 672
BfmI CTRYAG 3 cut(s) 549, 831, 987
BfuAI ACCTGC 2 cut(s) 1048, 1137
BfuI GTATCC 4 cut(s) 71, 644, 899, 998
BlpI GCTNAGC 3 cut(s) 642, 771, 942
Bme1390I CCNGG 7 cut(s) 225, 308, 366, 717, 870, 903, 1047
Bme18I GGWCC 4 cut(s) 131, 271, 371, 1109
BmgT120I GGNCC 6 cut(s) 131, 271, 371, 419, 1010, 1109
BmiI GGNNCC 6 cut(s) 123, 133, 272, 633, 1062, 1110
BmrFI CCNGG 7 cut(s) 225, 308, 366, 717, 870, 903, 1047
BmsI GCATC 2 cut(s) 1088, 1107
BpmI CTGGAG 5 cut(s) 93, 192, 387, 852, 909
Bpu1102I GCTNAGC 3 cut(s) 642, 771, 942
BpuEI CTTGAG 2 cut(s) 450, 567
Bsa29I ATCGAT 1 cut(s) 607
BsaJI CCNNGG 5 cut(s) 14, 223, 306, 307, 700
BsaWI WCCGGW 1 cut(s) 1001
Bse118I RCCGGY 3 cut(s) 520, 659, 766
Bse1I ACTGG 4 cut(s) 264, 274, 428, 751
Bse21I CCTNAGG 1 cut(s) 112
Bse3DI GCAATG 1 cut(s) 72
BseBI CCWGG 7 cut(s) 225, 308, 366, 717, 870, 903, 1047
BseCI ATCGAT 1 cut(s) 607
BseDI CCNNGG 5 cut(s) 14, 223, 306, 307, 700
BseGI GGATG 2 cut(s) 122, 1016
BseMI GCAATG 1 cut(s) 72
BseNI ACTGG 4 cut(s) 264, 274, 428, 751
BseRI GAGGAG 1 cut(s) 225
BseXI GCAGC 9 cut(s) 268, 271, 364, 367, 373, 563, 910, 973, 1001
BseYI CCCAGC 2 cut(s) 294, 860
BsgI GTGCAG 2 cut(s) 873, 917
BshFI GGCC 5 cut(s) 333, 420, 882, 1012, 1041
BshNI GGYRCC 2 cut(s) 631, 1060
BshVI ATCGAT 1 cut(s) 607
BsiHKAI GWGCWC 2 cut(s) 730, 802
BsiSI CCGG 4 cut(s) 521, 660, 767, 1002
BslFI GGGAC 6 cut(s) 117, 284, 465, 841, 948, 1122
BsmAI GTCTC 1 cut(s) 213
BsmBI CGTCTC 1 cut(s) 213
BsmFI GGGAC 6 cut(s) 117, 284, 465, 841, 948, 1122
BsmI GAATGC 1 cut(s) 913
BsnI GGCC 5 cut(s) 333, 420, 882, 1012, 1041
Bsp1286I GDGCHC 3 cut(s) 124, 730, 802
Bsp143I GATC 3 cut(s) 529, 608, 949
Bsp1720I GCTNAGC 3 cut(s) 642, 771, 942
Bsp19I CCATGG 1 cut(s) 14
BspACI CCGC 4 cut(s) 422, 425, 911, 1123
BspANI GGCC 5 cut(s) 333, 420, 882, 1012, 1041
BspDI ATCGAT 1 cut(s) 607
BspLI GGNNCC 6 cut(s) 123, 133, 272, 633, 1062, 1110
BspMAI CTGCAG 3 cut(s) 553, 835, 991
BspMI ACCTGC 2 cut(s) 1048, 1137
BspPI GGATC 1 cut(s) 944
BspT107I GGYRCC 2 cut(s) 631, 1060
BsrDI GCAATG 1 cut(s) 72
BsrFI RCCGGY 3 cut(s) 520, 659, 766
BsrI ACTGG 4 cut(s) 264, 274, 428, 751
BssAI RCCGGY 3 cut(s) 520, 659, 766
BssECI CCNNGG 5 cut(s) 14, 223, 306, 307, 700
BssMI GATC 3 cut(s) 529, 608, 949
BssSI CACGAG 1 cut(s) 1103
BssT1I CCWWGG 2 cut(s) 14, 700
Bst2BI CACGAG 1 cut(s) 1103
Bst2UI CCWGG 7 cut(s) 225, 308, 366, 717, 870, 903, 1047
Bst4CI ACNGT 4 cut(s) 50, 168, 512, 983
BstAPI GCANNNNNTGC 2 cut(s) 830, 1085
BstC8I GCNNGC 8 cut(s) 335, 422, 556, 777, 884, 888, 1039, 1043
BstDSI CCRYGG 1 cut(s) 14
BstEII GGTNACC 1 cut(s) 689
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 122, 1016
BstHHI GCGC 2 cut(s) 289, 1028
BstKTI GATC 3 cut(s) 532, 611, 952
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 3 cut(s) 529, 608, 949
BstNI CCWGG 7 cut(s) 225, 308, 366, 717, 870, 903, 1047
BstPI GGTNACC 1 cut(s) 689
BstSCI CCNGG 7 cut(s) 223, 306, 364, 715, 868, 901, 1045
BstSFI CTRYAG 3 cut(s) 549, 831, 987
BstV1I GCAGC 9 cut(s) 268, 271, 364, 367, 373, 563, 910, 973, 1001
BstX2I RGATCY 1 cut(s) 949
BstXI CCANNNNNNTGG 1 cut(s) 314
BstYI RGATCY 1 cut(s) 949
Bsu15I ATCGAT 1 cut(s) 607
Bsu36I CCTNAGG 1 cut(s) 112
BsuI GTATCC 4 cut(s) 71, 644, 899, 998
BsuRI GGCC 5 cut(s) 333, 420, 882, 1012, 1041
BsuTUI ATCGAT 1 cut(s) 607
BtgI CCRYGG 1 cut(s) 14
BtsCI GGATG 2 cut(s) 122, 1016
BveI ACCTGC 2 cut(s) 1048, 1137
Cac8I GCNNGC 8 cut(s) 335, 422, 556, 777, 884, 888, 1039, 1043
CaiI CAGNNNCTG 3 cut(s) 284, 932, 953
CfoI GCGC 2 cut(s) 289, 1028
Cfr10I RCCGGY 3 cut(s) 520, 659, 766
Cfr13I GGNCC 6 cut(s) 131, 271, 371, 419, 1010, 1109
ClaI ATCGAT 1 cut(s) 607
CseI GACGC 1 cut(s) 195
Csp6I GTAC 2 cut(s) 9, 508
CviAII CATG 2 cut(s) 15, 488
CviQI GTAC 2 cut(s) 9, 508
DpnI GATC 3 cut(s) 531, 610, 951
DpnII GATC 3 cut(s) 529, 608, 949
EaeI YGGCCR 3 cut(s) 331, 880, 1039
EciI GGCGGA 1 cut(s) 1112
Eco130I CCWWGG 2 cut(s) 14, 700
Eco24I GRGCYC 1 cut(s) 124
Eco32I GATATC 1 cut(s) 485
Eco47I GGWCC 4 cut(s) 131, 271, 371, 1109
Eco81I CCTNAGG 1 cut(s) 112
Eco91I GGTNACC 1 cut(s) 689
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoO109I RGGNCCY 2 cut(s) 371, 1109
EcoO65I GGTNACC 1 cut(s) 689
EcoRII CCWGG 7 cut(s) 223, 306, 364, 715, 868, 901, 1045
EcoRV GATATC 1 cut(s) 485
EcoT14I CCWWGG 2 cut(s) 14, 700
EcoT38I GRGCYC 1 cut(s) 124
ErhI CCWWGG 2 cut(s) 14, 700
Esp3I CGTCTC 1 cut(s) 213
FaeI CATG 2 cut(s) 18, 491
FaqI GGGAC 6 cut(s) 117, 284, 465, 841, 948, 1122
FatI CATG 2 cut(s) 14, 487
FauI CCCGC 2 cut(s) 429, 918
FauNDI CATATG 2 cut(s) 526, 781
FbaI TGATCA 1 cut(s) 529
FokI GGATG 2 cut(s) 129, 1003
FriOI GRGCYC 1 cut(s) 124
FspBI CTAG 2 cut(s) 150, 672
GlaI GCGC 2 cut(s) 288, 1027
GsaI CCCAGC 2 cut(s) 298, 864
GsuI CTGGAG 5 cut(s) 93, 192, 387, 852, 909
HaeIII GGCC 5 cut(s) 333, 420, 882, 1012, 1041
HapII CCGG 4 cut(s) 521, 660, 767, 1002
HgaI GACGC 1 cut(s) 195
HhaI GCGC 2 cut(s) 289, 1028
Hin1II CATG 2 cut(s) 18, 491
Hin6I GCGC 2 cut(s) 287, 1026
HinP1I GCGC 2 cut(s) 287, 1026
HincII GTYRAC 1 cut(s) 665
HindII GTYRAC 1 cut(s) 665
HinfI GANTC 1 cut(s) 620
HpaII CCGG 4 cut(s) 521, 660, 767, 1002
Hpy166II GTNNAC 1 cut(s) 665
Hpy188I TCNGA 1 cut(s) 1178
Hpy188III TCNNGA 6 cut(s) 72, 114, 171, 467, 584, 933
Hpy8I GTNNAC 1 cut(s) 665
HpyAV CCTTC 3 cut(s) 135, 225, 354
HpyCH4III ACNGT 4 cut(s) 50, 168, 512, 983
Hsp92II CATG 2 cut(s) 18, 491
HspAI GCGC 2 cut(s) 287, 1026
Ksp22I TGATCA 1 cut(s) 529
Kzo9I GATC 3 cut(s) 529, 608, 949
LmnI GCTCC 8 cut(s) 127, 190, 385, 394, 725, 785, 797, 1125
Lsp1109I GCAGC 9 cut(s) 268, 271, 364, 367, 373, 563, 910, 973, 1001
LweI GCATC 2 cut(s) 1088, 1107
MaeI CTAG 2 cut(s) 150, 672
MaeIII GTNAC 5 cut(s) 317, 407, 572, 689, 955
MalI GATC 3 cut(s) 531, 610, 951
MboI GATC 3 cut(s) 529, 608, 949
MflI RGATCY 1 cut(s) 949
MhlI GDGCHC 3 cut(s) 124, 730, 802
MlsI TGGCCA 3 cut(s) 333, 882, 1041
MluCI AATT 2 cut(s) 33, 412
MluNI TGGCCA 3 cut(s) 333, 882, 1041
Mox20I TGGCCA 3 cut(s) 333, 882, 1041
MscI TGGCCA 3 cut(s) 333, 882, 1041
Msp20I TGGCCA 3 cut(s) 333, 882, 1041
MspA1I CMGCKG 2 cut(s) 281, 1037
MspI CCGG 4 cut(s) 521, 660, 767, 1002
MspR9I CCNGG 7 cut(s) 225, 308, 366, 717, 870, 903, 1047
Mva1269I GAATGC 1 cut(s) 913
MvaI CCWGG 7 cut(s) 225, 308, 366, 717, 870, 903, 1047
NcoI CCATGG 1 cut(s) 14
NdeI CATATG 2 cut(s) 526, 781
NdeII GATC 3 cut(s) 529, 608, 949
NlaIII CATG 2 cut(s) 18, 491
NlaIV GGNNCC 6 cut(s) 123, 133, 272, 633, 1062, 1110
PaqCI CACCTGC 2 cut(s) 1048, 1137
PasI CCCWGGG 1 cut(s) 307
PctI GAATGC 1 cut(s) 913
PfeI GAWTC 1 cut(s) 620
PflMI CCANNNNNTGG 6 cut(s) 248, 722, 932, 1022, 1037, 1052
PfoI TCCNGGA 2 cut(s) 364, 868
PpuMI RGGWCCY 2 cut(s) 371, 1109
Psp5II RGGWCCY 2 cut(s) 371, 1109
Psp6I CCWGG 7 cut(s) 223, 306, 364, 715, 868, 901, 1045
PspEI GGTNACC 1 cut(s) 689
PspFI CCCAGC 2 cut(s) 294, 860
PspGI CCWGG 7 cut(s) 223, 306, 364, 715, 868, 901, 1045
PspN4I GGNNCC 6 cut(s) 123, 133, 272, 633, 1062, 1110
PspPI GGNCC 6 cut(s) 131, 271, 371, 419, 1010, 1109
PspPPI RGGWCCY 2 cut(s) 371, 1109
PstI CTGCAG 3 cut(s) 553, 835, 991
PstNI CAGNNNCTG 3 cut(s) 284, 932, 953
PsuI RGATCY 1 cut(s) 949
PvuII CAGCTG 2 cut(s) 281, 1037
RsaI GTAC 2 cut(s) 10, 509
RsaNI GTAC 2 cut(s) 9, 508
Sau3AI GATC 3 cut(s) 529, 608, 949
Sau96I GGNCC 6 cut(s) 131, 271, 371, 419, 1010, 1109
ScrFI CCNGG 7 cut(s) 225, 308, 366, 717, 870, 903, 1047
SduI GDGCHC 3 cut(s) 124, 730, 802
SfaNI GCATC 2 cut(s) 1088, 1107
SfcI CTRYAG 3 cut(s) 549, 831, 987
SinI GGWCC 4 cut(s) 131, 271, 371, 1109
SmlI CTYRAG 2 cut(s) 465, 582
SmoI CTYRAG 2 cut(s) 465, 582
Sse9I AATT 2 cut(s) 33, 412
SsiI CCGC 4 cut(s) 422, 425, 911, 1123
SspMI CTAG 2 cut(s) 150, 672
StyD4I CCNGG 7 cut(s) 223, 306, 364, 715, 868, 901, 1045
StyI CCWWGG 2 cut(s) 14, 700
TaaI ACNGT 4 cut(s) 50, 168, 512, 983
TaqI TCGA 1 cut(s) 607
TasI AATT 2 cut(s) 33, 412
TauI GCSGC 1 cut(s) 427
TfiI GAWTC 1 cut(s) 620
TseI GCWGC 9 cut(s) 281, 284, 355, 377, 386, 551, 898, 986, 989
TspGWI ACGGA 1 cut(s) 249
Van91I CCANNNNNTGG 6 cut(s) 248, 722, 932, 1022, 1037, 1052
VpaK11BI GGWCC 4 cut(s) 131, 271, 371, 1109
XagI CCTNNNNNAGG 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 1 cut(s) 1049
XspI CTAG 2 cut(s) 150, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.