Rorug06G0381700

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0009579
Physical Location & Seq
Forward (+)
52756288 .. 52760326
4039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0381700.1

Sequence Viewer

Length: 861 bp
ATGATGTTGGCGAAGGACGAGTGGGCGAGTGCGGCGATGACCGACGACGTCCTCGTCGTCGAGCTACTGCTGCGGCTGAAGGAGTCGCGAGCGGCGTCTTCCTCGTCGTCTTCGCTTCTCCACTATCCCTTTGCGGCCAAGTCCGTGATTCCGCGGTGGGGTCTCCGGCTGCCACGCAGCAAGGCGGCGGCGGCGGCGGCGTCATCCTCGAGATGCGACGCCGTTTGCCGGAGGAACAACAGTAAGAAGGACGACTCGACTAGATGCAGCCCCACCACGCCGCTTTCCTGGAGCGGCGGCAGTGGCAGCGGCGGCGGCTCGCCTTCCGGCACTGCCGATGGATTCGAAGAGTCCAGCCGCCCCAGATCCAAGGGTACTGCTACATATGAGTCCACTAGCACCACCAATGGAATCAAGAGGGCAAGGAAGAAGAAGTCATATGATGAGCTTAAAGAAGAGGAAACTTCGTTGTTGAAAGAAAGGACCAATTTGAGAAAGGAAATAGCGACATTACAGACTACTTTTAAAGAGCAAAGAGCCAAAAATGAGAACTTAAAGAGAGTGAAGCTTGACTTGAACTTGCATTCTTCTGCCACAAATTTGATTGCGTACTTTGATGGAGCGGAGAACGCTATTGCCAGTCAACCCCATCAGAGAATAGCACCTCCTAGTTTCGGACACTTTCCTTCTCATTTGCTTTCACATGCCACACCGTATGTTCATCCGTATCCACAACTGGATTCCTGCGATGAACACAAGGCTGCTTTGTCATCCGGGAACAATTCTTTCGTGCTGCCTGATCTGAACATGGTGCCTTTCGAGGAGGACTCTGGTTCGGAAATGCTATACGGGATGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0019439 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0035925 GO:0036464 GO:0036477 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:1990904 GO:2000112 GO:2000113 GO:2000377 GO:2000378 GO:2000628
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

286

Amino Acids

31.16

Weight (kDa)

8.79

Isoelectric Point (pI)

55.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AatII GACGTC 1 cut(s) 51
AccB1I GGYRCC 1 cut(s) 811
AccBSI CCGCTC 3 cut(s) 92, 294, 623
AccII CGCG 2 cut(s) 88, 154
AclWI GGATC 1 cut(s) 360
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 598
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 4 cut(s) 48, 95, 200, 219
AfaI GTAC 2 cut(s) 376, 611
AfiI CCNNNNNNNGG 3 cut(s) 158, 228, 674
AgsI TTSAA 2 cut(s) 475, 577
AjnI CCWGG 1 cut(s) 287
AluBI AGCT 4 cut(s) 64, 448, 568, 858
AluI AGCT 4 cut(s) 64, 448, 568, 858
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 360
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 1 cut(s) 135
ApeKI GCWGC 7 cut(s) 70, 169, 177, 267, 306, 761, 793
ApoI RAATTY 1 cut(s) 598
AspS9I GGNCC 1 cut(s) 483
AsuC2I CCSGG 1 cut(s) 775
AsuII TTCGAA 1 cut(s) 345
AvaI CYCGRG 1 cut(s) 208
AvaII GGWCC 1 cut(s) 483
BanI GGYRCC 1 cut(s) 811
BbsI GAAGAC 2 cut(s) 90, 102
BbvI GCAGC 7 cut(s) 57, 156, 189, 279, 318, 748, 780
BccI CCATC 3 cut(s) 332, 611, 657
BceAI ACGGC 1 cut(s) 206
BciT130I CCWGG 1 cut(s) 289
BciVI GTATCC 1 cut(s) 738
BcnI CCSGG 1 cut(s) 775
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 3 cut(s) 261, 396, 669
BfuI GTATCC 1 cut(s) 738
Bme1390I CCNGG 2 cut(s) 289, 775
Bme18I GGWCC 1 cut(s) 483
BmeT110I CYCGRG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 1 cut(s) 813
BmrFI CCNGG 2 cut(s) 289, 775
BmsI GCATC 2 cut(s) 203, 254
BpiI GAAGAC 2 cut(s) 90, 102
BplI GAGNNNNNCTC 2 cut(s) 812, 844
BpmI CTGGAG 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 345
BpuMI CCSGG 1 cut(s) 775
BsaHI GRCGYC 4 cut(s) 48, 95, 200, 219
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 152, 369
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 228, 674
Bse1I ACTGG 2 cut(s) 639, 741
BseBI CCWGG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 152, 369
BseGI GGATG 4 cut(s) 203, 721, 770, 858
BseLI CCNNNNNNNGG 3 cut(s) 158, 228, 674
BseNI ACTGG 2 cut(s) 639, 741
BseRI GAGGAG 1 cut(s) 836
BseXI GCAGC 7 cut(s) 57, 156, 189, 279, 318, 748, 780
Bsh1236I CGCG 2 cut(s) 88, 154
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 811
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 4 cut(s) 166, 229, 327, 774
BslI CCNNNNNNNGG 3 cut(s) 158, 228, 674
BsmAI GTCTC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 583
BsnI GGCC 1 cut(s) 137
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 208
Bsp119I TTCGAA 1 cut(s) 345
Bsp143I GATC 2 cut(s) 365, 799
Bsp68I TCGCGA 1 cut(s) 88
BspANI GGCC 1 cut(s) 137
BspFNI CGCG 2 cut(s) 88, 154
BspLI GGNNCC 1 cut(s) 813
BspPI GGATC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 811
BspTNI GGTCTC 1 cut(s) 167
BsrBI CCGCTC 3 cut(s) 92, 294, 623
BsrI ACTGG 2 cut(s) 639, 741
BssECI CCNNGG 2 cut(s) 152, 369
BssMI GATC 2 cut(s) 365, 799
BssNI GRCGYC 4 cut(s) 48, 95, 200, 219
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 242, 714
Bst6I CTCTTC 2 cut(s) 342, 450
BstACI GRCGYC 4 cut(s) 48, 95, 200, 219
BstBI TTCGAA 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 90, 320
BstDSI CCRYGG 1 cut(s) 152
BstF5I GGATG 4 cut(s) 203, 721, 770, 858
BstFNI CGCG 2 cut(s) 88, 154
BstKTI GATC 2 cut(s) 368, 802
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 2 cut(s) 365, 799
BstNI CCWGG 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 707
BstSCI CCNGG 2 cut(s) 287, 773
BstUI CGCG 2 cut(s) 88, 154
BstV1I GCAGC 7 cut(s) 57, 156, 189, 279, 318, 748, 780
BstV2I GAAGAC 2 cut(s) 90, 102
BstX2I RGATCY 1 cut(s) 365
BstYI RGATCY 1 cut(s) 365
BsuI GTATCC 1 cut(s) 738
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 152
BtgZI GCGATG 2 cut(s) 50, 762
BtsCI GGATG 4 cut(s) 203, 721, 770, 858
BtsI GCAGTG 2 cut(s) 307, 330
BtsIMutI CAGTG 2 cut(s) 307, 330
BtuMI TCGCGA 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 90, 320
Cfr13I GGNCC 1 cut(s) 483
Cfr42I CCGCGG 1 cut(s) 155
CseI GACGC 3 cut(s) 84, 189, 227
Csp6I GTAC 2 cut(s) 375, 610
CviAII CATG 2 cut(s) 704, 808
CviQI GTAC 2 cut(s) 375, 610
DpnI GATC 2 cut(s) 367, 801
DpnII GATC 2 cut(s) 365, 799
DraI TTTAAA 1 cut(s) 526
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 342, 450
EarI CTCTTC 2 cut(s) 342, 450
Eco130I CCWWGG 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 287
EcoT14I CCWWGG 1 cut(s) 369
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 2 cut(s) 707, 811
FaiI YATR 8 cut(s) 385, 387, 439, 441, 705, 717, 809, 847
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FatI CATG 2 cut(s) 703, 807
FauNDI CATATG 2 cut(s) 385, 439
FokI GGATG 3 cut(s) 190, 708, 757
FspBI CTAG 3 cut(s) 261, 396, 669
GsuI CTGGAG 1 cut(s) 310
HaeIII GGCC 1 cut(s) 137
HapII CCGG 4 cut(s) 166, 229, 327, 774
HgaI GACGC 3 cut(s) 84, 189, 227
Hin1I GRCGYC 4 cut(s) 48, 95, 200, 219
Hin1II CATG 2 cut(s) 707, 811
HincII GTYRAC 1 cut(s) 644
HindII GTYRAC 1 cut(s) 644
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 9 cut(s) 83, 148, 254, 342, 350, 389, 411, 740, 827
HpaII CCGG 4 cut(s) 166, 229, 327, 774
Hpy166II GTNNAC 2 cut(s) 393, 644
Hpy188I TCNGA 4 cut(s) 654, 677, 804, 838
Hpy188III TCNNGA 3 cut(s) 87, 210, 415
Hpy8I GTNNAC 2 cut(s) 393, 644
Hpy99I CGWCG 6 cut(s) 47, 50, 59, 62, 109, 221
HpyAV CCTTC 5 cut(s) 7, 73, 241, 333, 696
HpyCH4III ACNGT 2 cut(s) 242, 714
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 2 cut(s) 267, 583
HpySE526I ACGT 1 cut(s) 48
Hsp92I GRCGYC 4 cut(s) 48, 95, 200, 219
Hsp92II CATG 2 cut(s) 707, 811
KspI CCGCGG 1 cut(s) 155
Kzo9I GATC 2 cut(s) 365, 799
LmnI GCTCC 2 cut(s) 291, 620
Lsp1109I GCAGC 7 cut(s) 57, 156, 189, 279, 318, 748, 780
LweI GCATC 2 cut(s) 203, 254
MaeI CTAG 3 cut(s) 261, 396, 669
MaeII ACGT 1 cut(s) 48
MalI GATC 2 cut(s) 367, 801
MbiI CCGCTC 3 cut(s) 92, 294, 623
MboI GATC 2 cut(s) 365, 799
MboII GAAGA 7 cut(s) 90, 102, 359, 439, 442, 467, 579
MflI RGATCY 1 cut(s) 365
MluCI AATT 3 cut(s) 487, 598, 781
MlyI GAGTC 5 cut(s) 92, 248, 359, 398, 821
MnlI CCTC 9 cut(s) 62, 112, 217, 225, 411, 451, 675, 814, 817
MseI TTAA 3 cut(s) 450, 525, 554
MspA1I CMGCKG 2 cut(s) 154, 309
MspI CCGG 4 cut(s) 166, 229, 327, 774
MspR9I CCNGG 2 cut(s) 289, 775
Mva1269I GAATGC 1 cut(s) 583
MvaI CCWGG 1 cut(s) 289
MvnI CGCG 2 cut(s) 88, 154
NciI CCSGG 1 cut(s) 775
NdeI CATATG 2 cut(s) 385, 439
NdeII GATC 2 cut(s) 365, 799
NlaIII CATG 2 cut(s) 707, 811
NlaIV GGNNCC 1 cut(s) 813
NruI TCGCGA 1 cut(s) 88
NspI RCATGY 1 cut(s) 707
NspV TTCGAA 1 cut(s) 345
PaeR7I CTCGAG 1 cut(s) 208
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 54, 92
PctI GAATGC 1 cut(s) 583
PfeI GAWTC 4 cut(s) 148, 342, 411, 740
PflFI GACNNNGTC 1 cut(s) 47
PfoI TCCNGGA 2 cut(s) 287, 773
PleI GAGTC 5 cut(s) 91, 248, 358, 397, 821
PpsI GAGTC 5 cut(s) 91, 248, 358, 397, 821
Psp6I CCWGG 1 cut(s) 287
PspGI CCWGG 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 813
PspPI GGNCC 1 cut(s) 483
PsuI RGATCY 1 cut(s) 365
PsyI GACNNNGTC 1 cut(s) 47
RruI TCGCGA 1 cut(s) 88
RsaI GTAC 2 cut(s) 376, 611
RsaNI GTAC 2 cut(s) 375, 610
SacII CCGCGG 1 cut(s) 155
SaqAI TTAA 3 cut(s) 450, 525, 554
Sau3AI GATC 2 cut(s) 365, 799
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 5 cut(s) 92, 248, 359, 398, 821
ScrFI CCNGG 2 cut(s) 289, 775
SetI ASST 6 cut(s) 51, 66, 450, 570, 667, 860
SfaNI GCATC 2 cut(s) 203, 254
Sfr274I CTCGAG 1 cut(s) 208
Sfr303I CCGCGG 1 cut(s) 155
SfuI TTCGAA 1 cut(s) 345
SgrBI CCGCGG 1 cut(s) 155
SinI GGWCC 1 cut(s) 483
SlaI CTCGAG 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
Sse9I AATT 3 cut(s) 487, 598, 781
SspMI CTAG 3 cut(s) 261, 396, 669
StyD4I CCNGG 2 cut(s) 287, 773
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 242, 714
TaiI ACGT 1 cut(s) 51
TaqI TCGA 5 cut(s) 60, 209, 257, 345, 819
TaqII GACCGA 1 cut(s) 56
TasI AATT 3 cut(s) 487, 598, 781
TfiI GAWTC 4 cut(s) 148, 342, 411, 740
Tru1I TTAA 3 cut(s) 450, 525, 554
Tru9I TTAA 3 cut(s) 450, 525, 554
TscAI CASTG 2 cut(s) 307, 337
TseI GCWGC 7 cut(s) 70, 169, 177, 267, 306, 761, 793
TspDTI ATGAA 2 cut(s) 710, 765
TspGWI ACGGA 2 cut(s) 133, 714
TspRI CASTG 2 cut(s) 307, 337
Tth111I GACNNNGTC 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 483
XapI RAATTY 1 cut(s) 598
XceI RCATGY 1 cut(s) 707
XhoI CTCGAG 1 cut(s) 208
XspI CTAG 3 cut(s) 261, 396, 669
ZraI GACGTC 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.