Rh6AG495600

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009579
Physical Location & Seq
Forward (+)
67166497 .. 67169681
3185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG495600.1

Sequence Viewer

Length: 831 bp
ATGGCCGACGAAGCACAATACTCCTCCGGGCCCGATTCCGGCAGCAATAAGCGAAAATATGAGGAGCCTACTACCCGCAGGGTCACCGGCTTCTCAGCCCCCATCATCGCCTCCTCATCGCCCGACTCTGTCCCCACGTCCTACAGCAGCGTTCCTCCGCCCGTCGACGACATCCAGCTCGCCAAGCAGCGCGCTCAGGAGATTGCTGCTCGATTGTTCAACAACGCCAGTAGCGGCGTTGCTGCCGCTGGCGGCGGCCTGGAATCTAAGCGCCCTAGAGTTGATAATGGCGGTGGCTTCGATTCCGGTGACAAGGGCTTCAGCTCTATTCCTTCTGATGCCAAGCCTTACTCAGCTCCATCGTCGATCCCAGTTTCGTATGGGTTCCAAGGAGGGAGCAAAAAGATTGATGTTCCAAATGGCAGGGTCGGTGTTATTATTGGTAAACTGGGTGAGACTATTAAGTATCTTCAGGCTCAGTCTGGAGGAGCTAAGATTCAAGTTACCCGAGATGCAGATGCCGACCTTAATTGCCCAACTAGGGAGGTGGAGATCATGGGAACTCCAGAACAAATTGCAAAAGCTGAGCATTTGATAAATGAAGTTCTTGCTGAGGCTGAATCAGGCGGTCCTGCCATAGTTTCTCGAAGATTAACTGGACAAGCTGGAGCTGAAACATTTGTAATGAAAATTCCTAACAACAAGGTTGGTCTTGTAATTGGTAAACGAGGGGAAACTATTAAAAATATGCAAGCTAGTACTGCTGCTCGTATACAGGGTTTTCTAGATCTACTAAAGTATACATATTATGTTCCCTTTGTATTGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0019439 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0035925 GO:0036464 GO:0036477 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:1990904 GO:2000112 GO:2000113 GO:2000377 GO:2000378 GO:2000628
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

276

Amino Acids

29.04

Weight (kDa)

8.5

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 134 - 201 6e-18 KH domain
KH_1 PF00013 226 - 259 2.7e-09 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 165, 772, 800
AccII CGCG 1 cut(s) 192
AciI CCGC 8 cut(s) 76, 158, 234, 246, 252, 255, 291, 627
AclWI GGATC 1 cut(s) 361
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 690
AcuI CTGAAG 2 cut(s) 304, 455
AfaI GTAC 1 cut(s) 760
AfiI CCNNNNNNNGG 2 cut(s) 38, 541
AgsI TTSAA 2 cut(s) 220, 500
AjiI CACGTC 1 cut(s) 138
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 8 cut(s) 178, 324, 356, 491, 584, 665, 671, 755
AluI AGCT 8 cut(s) 178, 324, 356, 491, 584, 665, 671, 755
Alw26I GTCTC 1 cut(s) 449
AlwI GGATC 1 cut(s) 361
Ama87I CYCGRG 1 cut(s) 507
AoxI GGCC 3 cut(s) 3, 29, 256
ApaI GGGCCC 1 cut(s) 33
ApeKI GCWGC 6 cut(s) 42, 147, 187, 206, 242, 764
ApoI RAATTY 1 cut(s) 690
AspLEI GCGC 3 cut(s) 192, 194, 273
AspS9I GGNCC 3 cut(s) 29, 30, 629
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 3 cut(s) 76, 320, 464
AvaI CYCGRG 1 cut(s) 507
AvaII GGWCC 1 cut(s) 629
BaeGI GKGCMC 1 cut(s) 33
BanII GRGCYC 1 cut(s) 33
BbvCI CCTCAGC 1 cut(s) 612
BbvI GCAGC 6 cut(s) 54, 159, 193, 199, 229, 751
BccI CCATC 2 cut(s) 110, 367
BciT130I CCWGG 1 cut(s) 260
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 4 cut(s) 276, 540, 756, 785
BfmI CTRYAG 1 cut(s) 142
BfoI RGCGCY 1 cut(s) 274
BglII AGATCT 1 cut(s) 787
BlpI GCTNAGC 1 cut(s) 585
BmcAI AGTACT 1 cut(s) 760
Bme1390I CCNGG 2 cut(s) 28, 260
Bme18I GGWCC 1 cut(s) 629
BmeT110I CYCGRG 1 cut(s) 507
BmgBI CACGTC 1 cut(s) 138
BmgT120I GGNCC 3 cut(s) 29, 30, 629
BmiI GGNNCC 3 cut(s) 31, 66, 386
BmrFI CCNGG 2 cut(s) 28, 260
BmrI ACTGGG 2 cut(s) 365, 458
BmsI GCATC 3 cut(s) 328, 502, 508
BmuI ACTGGG 2 cut(s) 365, 458
BpmI CTGGAG 3 cut(s) 504, 549, 687
Bpu10I CCTNAGC 2 cut(s) 195, 612
Bpu1102I GCTNAGC 1 cut(s) 585
BpuMI CCSGG 1 cut(s) 28
BsaJI CCNNGG 1 cut(s) 388
BsaWI WCCGGW 1 cut(s) 305
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 541
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 4 cut(s) 228, 371, 453, 661
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 38, 541
BseMII CTCAG 6 cut(s) 108, 209, 366, 491, 576, 603
BseNI ACTGG 4 cut(s) 228, 371, 453, 661
BsePI GCGCGC 1 cut(s) 190
BseRI GAGGAG 4 cut(s) 13, 77, 103, 501
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 6 cut(s) 54, 159, 193, 199, 229, 751
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 3 cut(s) 5, 31, 258
BsiHKCI CYCGRG 1 cut(s) 507
BsiSI CCGG 4 cut(s) 27, 39, 87, 306
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 38, 541
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 3 cut(s) 5, 31, 258
BsoBI CYCGRG 1 cut(s) 507
Bsp120I GGGCCC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 3 cut(s) 366, 552, 787
Bsp1720I GCTNAGC 1 cut(s) 585
BspACI CCGC 8 cut(s) 76, 158, 234, 246, 252, 255, 291, 627
BspANI GGCC 3 cut(s) 5, 31, 258
BspCNI CTCAG 6 cut(s) 107, 208, 365, 490, 577, 604
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 3 cut(s) 31, 66, 386
BspPI GGATC 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 4 cut(s) 228, 371, 453, 661
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 388
BssHII GCGCGC 1 cut(s) 190
BssMI GATC 3 cut(s) 366, 552, 787
BssNAI GTATAC 2 cut(s) 773, 801
BssT1I CCWWGG 1 cut(s) 388
Bst1107I GTATAC 2 cut(s) 773, 801
Bst2UI CCWGG 1 cut(s) 260
BstC8I GCNNGC 4 cut(s) 180, 192, 250, 753
BstDEI CTNAG 9 cut(s) 94, 195, 267, 352, 477, 492, 585, 612, 828
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 1 cut(s) 171
BstFNI CGCG 1 cut(s) 192
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 3 cut(s) 192, 194, 273
BstKTI GATC 3 cut(s) 369, 555, 790
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 3 cut(s) 366, 552, 787
BstMWI GCNNNNNNNGC 3 cut(s) 11, 184, 761
BstNI CCWGG 1 cut(s) 260
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 26, 258
BstSFI CTRYAG 1 cut(s) 142
BstSLI GKGCMC 1 cut(s) 33
BstUI CGCG 1 cut(s) 192
BstV1I GCAGC 6 cut(s) 54, 159, 193, 199, 229, 751
BstX2I RGATCY 1 cut(s) 787
BstYI RGATCY 1 cut(s) 787
BstZ17I GTATAC 2 cut(s) 773, 801
BsuRI GGCC 3 cut(s) 5, 31, 258
BtgZI GCGATG 2 cut(s) 91, 102
BtrI CACGTC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 4 cut(s) 180, 192, 250, 753
CfoI GCGC 3 cut(s) 192, 194, 273
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 3 cut(s) 29, 30, 629
Csp6I GTAC 1 cut(s) 759
CviAII CATG 1 cut(s) 556
CviQI GTAC 1 cut(s) 759
DdeI CTNAG 9 cut(s) 94, 195, 267, 352, 477, 492, 585, 612, 828
DpnI GATC 3 cut(s) 368, 554, 789
DpnII GATC 3 cut(s) 366, 552, 787
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 388
Eco24I GRGCYC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 629
Eco57I CTGAAG 2 cut(s) 304, 455
Eco88I CYCGRG 1 cut(s) 507
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 388
FaeI CATG 1 cut(s) 559
FaiI YATR 9 cut(s) 60, 381, 557, 638, 749, 773, 801, 805, 810
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 555
FauI CCCGC 1 cut(s) 83
FblI GTMKAC 3 cut(s) 165, 772, 800
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 33
FspBI CTAG 4 cut(s) 276, 540, 756, 785
GlaI GCGC 3 cut(s) 191, 193, 272
GsuI CTGGAG 3 cut(s) 504, 549, 687
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 3 cut(s) 5, 31, 258
HapII CCGG 4 cut(s) 27, 39, 87, 306
HhaI GCGC 3 cut(s) 192, 194, 273
Hin1II CATG 1 cut(s) 559
Hin6I GCGC 3 cut(s) 190, 192, 271
HinP1I GCGC 3 cut(s) 190, 192, 271
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HinfI GANTC 6 cut(s) 35, 125, 263, 302, 496, 620
HpaII CCGG 4 cut(s) 27, 39, 87, 306
HphI GGTGA 3 cut(s) 76, 320, 464
Hpy166II GTNNAC 5 cut(s) 166, 446, 725, 773, 801
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 5 cut(s) 197, 483, 566, 645, 785
Hpy8I GTNNAC 5 cut(s) 166, 446, 725, 773, 801
Hpy99I CGWCG 4 cut(s) 11, 167, 170, 367
HpyAV CCTTC 1 cut(s) 342
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 3 cut(s) 515, 578, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 184, 761
HpyF3I CTNAG 9 cut(s) 94, 195, 267, 352, 477, 492, 585, 612, 828
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 1 cut(s) 559
HspAI GCGC 3 cut(s) 190, 192, 271
Kzo9I GATC 3 cut(s) 366, 552, 787
LmnI GCTCC 5 cut(s) 64, 361, 396, 488, 668
Lsp1109I GCAGC 6 cut(s) 54, 159, 193, 199, 229, 751
LweI GCATC 3 cut(s) 328, 502, 508
MaeI CTAG 4 cut(s) 276, 540, 756, 785
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 3 cut(s) 82, 308, 502
MalI GATC 3 cut(s) 368, 554, 789
MboI GATC 3 cut(s) 366, 552, 787
MboII GAAGA 2 cut(s) 461, 660
MflI RGATCY 1 cut(s) 787
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 4 cut(s) 529, 573, 690, 717
MlyI GAGTC 1 cut(s) 119
MseI TTAA 4 cut(s) 462, 528, 653, 741
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 4 cut(s) 27, 39, 87, 306
MspR9I CCNGG 2 cut(s) 28, 260
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 11, 184, 761
NciI CCSGG 1 cut(s) 28
NdeII GATC 3 cut(s) 366, 552, 787
NlaIII CATG 1 cut(s) 559
NlaIV GGNNCC 3 cut(s) 31, 66, 386
NmuCI GTSAC 2 cut(s) 82, 308
PauI GCGCGC 1 cut(s) 190
PfeI GAWTC 5 cut(s) 35, 263, 302, 496, 620
PflFI GACNNNGTC 1 cut(s) 128
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 258
PspEI GGTNACC 1 cut(s) 82
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 3 cut(s) 31, 66, 386
PspOMI GGGCCC 1 cut(s) 29
PspPI GGNCC 3 cut(s) 29, 30, 629
PsuI RGATCY 1 cut(s) 787
PsyI GACNNNGTC 1 cut(s) 128
PteI GCGCGC 1 cut(s) 190
RsaI GTAC 1 cut(s) 760
RsaNI GTAC 1 cut(s) 759
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 4 cut(s) 462, 528, 653, 741
Sau3AI GATC 3 cut(s) 366, 552, 787
Sau96I GGNCC 3 cut(s) 29, 30, 629
ScaI AGTACT 1 cut(s) 760
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 28, 260
SduI GDGCHC 1 cut(s) 33
SfaNI GCATC 3 cut(s) 328, 502, 508
SfcI CTRYAG 1 cut(s) 142
SgrDI CGTCGACG 1 cut(s) 164
SinI GGWCC 1 cut(s) 629
Sse9I AATT 4 cut(s) 529, 573, 690, 717
SsiI CCGC 8 cut(s) 76, 158, 234, 246, 252, 255, 291, 627
SspMI CTAG 4 cut(s) 276, 540, 756, 785
StyD4I CCNGG 2 cut(s) 26, 258
StyI CCWWGG 1 cut(s) 388
TaiI ACGT 1 cut(s) 140
TaqI TCGA 5 cut(s) 165, 211, 300, 365, 646
TasI AATT 4 cut(s) 529, 573, 690, 717
TatI WGTACW 1 cut(s) 758
TauI GCSGC 4 cut(s) 237, 248, 255, 258
TfiI GAWTC 5 cut(s) 35, 263, 302, 496, 620
Tru1I TTAA 4 cut(s) 462, 528, 653, 741
Tru9I TTAA 4 cut(s) 462, 528, 653, 741
TseFI GTSAC 2 cut(s) 82, 308
TseI GCWGC 6 cut(s) 42, 147, 187, 206, 242, 764
Tsp45I GTSAC 2 cut(s) 82, 308
TspDTI ATGAA 2 cut(s) 615, 701
Tth111I GACNNNGTC 1 cut(s) 128
VpaK11BI GGWCC 1 cut(s) 629
XapI RAATTY 1 cut(s) 690
XbaI TCTAGA 1 cut(s) 784
XmiI GTMKAC 3 cut(s) 165, 772, 800
XspI CTAG 4 cut(s) 276, 540, 756, 785
ZrmI AGTACT 1 cut(s) 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.