RLG00000010471

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009579
Physical Location & Seq
Reverse (-)
1944496 .. 1949460
4965 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010471

Sequence Viewer

Length: 2067 bp
ATGGCCGACGAAGCACAATACTCCTCCGGGCCCGATTCCGGCAGCAATAAGCGAAAATATGAGGAGCCTACTACCCGCAGGGTCACCGGCTTCTCAGCCCCCATCATCGCCTCCTCATCGCCCGACTCTGTCCCCACGTCCTACAGCAGCGTTCCTCCGCCCGTCGACGACATCCAGCTCGCCAAGCAGCGCGCTCAGGAGATTGCTGCTCGATTGTTCAACAACGCCAGTAGCGGCGTTGCTGCCGGCGGCGGCGGCCTGGAATCTAAGCGCCCTAGAGTTGATAATGGCGGTGGCTTCGATTCCGGTGACAAGGGCTTCAGCTCTATTCCCTCTGATGCCAAGCCTTACTCAGCTCCATCGTCGATCCCAGTTTCGTATGGGTTCCAAGGAGGGAGCAAAAAGATTGATGTTCCAAATGGCAGGGTCGGTGTTATTATTGGTAAACTGGGTGAGACTATTAAGTATCTTCAGGCTCAGTCTGGAGGAGCTAAGATTCAAGTTACCCGAGATGCAGATGCCGACCTTAATTGCCCAACTAGGGAGGTGGAGATCATGGGAACTCCAGAACAAATTGCAAAAGCTGAGCGTTTGATAAATGACGTTCTTGCTGAGGCTGAATCAGGCGGTCCTGCCATAGTTTCTCGAAGGTTAACTGGACAAGCTGGAGCTGAAACATTTGTAATGAAAATTCCTAACAACAAGGTTGGTCTTGTAATTGGTAAGCGAGGGGAAACTATTAAAAATATGCAAGCTAGTACTGCTGCTCGTATACAGGTGATTCCTTTGCATCTTCCCCCCGGTGACACCTCAACCGAAAGGACAGTACAGATTGATGGAACTAGTGAACAAATTGAAGCTGCCAAACAGTTGGTGAATGAAGTTATTAGTGAGAACCGTGTTAGAAATCCAGCAATGGCTGGAGGATATTCACAGCAGGGTTATCAAGCACGTCCTCCCACTGGCTGGGCTCCTAGTGGTCCTCCAATGCAACAACCAGGTTATGGATATGGACAGTCCGGAGCATATTCTGGCACAACACCTCAGTATAATGCATCTCAGCCTTCTTATCCCGGTTATCCTCCTCAACCGGCATCTGGTGGATATCCCACCAATTGGGATCAGTCAGCTGTTGCACCAACTCAGCAGACCTCCCAGGCAGGTGGTTATGATTACTATTCCCAACAACCCTCACACCAACAGCAAAACCCGGGTGGTCCTGCTGCACCAGCAGATAATGCTAGTTACAATTATGGCCAGCCGCCTATTTCAGGCTATAATCAGCAAGGACAAGGTTATCCTCAGGATGGCTATGGTGGATATCAGGCACCACCTCAGTCTGGGTATGGCCAGCCACCTGCATACGATCAACATGGTTATCCTGCAGCCAACTATGGTAATGTGAGCAACCCAGCTCCAGATACCCATACTTCCTCTTATGGATCTCAGGGGGAATCAGCCCAAGCACCTCCTGTGCAGCCTGCTCCAGGGGGCCAGCAAGCATACAGTGCCACTCAACAGCCTAGCCCGAACCCCGCAAGTTATCCACCCCAAGTGTCTACTCAGCCAGGTTATGGAATGCCCCCAACTTCTCAAACTGGTTATGGGACTCAACCACCTGCTCAATCTGCATATGGACCTGGATATGGAGCACCTCAAGCGCAAAAGCCTCCTGCTCAGTCACCCACCACTCCTGGAGGATATGGTCAACCACCAGCTGTGCATCCAGGCTATCCCCATTCTCAGCCTCCACCTTCTGGATATGCTCAGCCTGATTCTGGTGCACGTGCTCCACCATCCAGTTATGGTTCTACAGCGGCTCAGGCAGGCTATGGTCCCCCATCTTATGGTGCACCGCCATCTGGTCAGCCAGGTTATGGGCAGGTGCCACCCTACAATACATCTTATGGTGCTGCAGGATACACACAGCCTCCTCCTGCGTATTCTGCTGAAGGAGCTAATGGAAACACTCGAGGTGCATATGATGGTGCTGGTGCTGGTGCTGGTGCTCCTGCTTCACAGACTGCTCAGCAAAGTGGAGTCACCAAAACTTCTCCACAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0019439 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0035925 GO:0036464 GO:0036477 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:1990904 GO:2000112 GO:2000113 GO:2000377 GO:2000378 GO:2000628
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

689

Amino Acids

70.65

Weight (kDa)

5.78

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 134 - 201 2.3e-17 KH domain
KH_1 PF00013 226 - 294 9.5e-19 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 4 cut(s) 1151, 1366, 1627, 1873
Acc36I ACCTGC 4 cut(s) 1151, 1366, 1627, 1873
AccB1I GGYRCC 2 cut(s) 1327, 1885
AccB7I CCANNNNNTGG 7 cut(s) 966, 1004, 1116, 1574, 1757, 1847, 1877
AccI GTMKAC 3 cut(s) 165, 772, 1559
AccII CGCG 1 cut(s) 192
AccIII TCCGGA 1 cut(s) 1019
AclWI GGATC 3 cut(s) 361, 1128, 1450
AcoI YGGCCR 3 cut(s) 3, 1255, 1348
AcsI RAATTY 1 cut(s) 690
AcuI CTGAAG 3 cut(s) 304, 455, 1971
AcvI CACGTG 1 cut(s) 1787
AfaI GTAC 2 cut(s) 760, 828
AgsI TTSAA 3 cut(s) 220, 500, 857
AhlI ACTAGT 1 cut(s) 842
AjiI CACGTC 2 cut(s) 138, 953
AjnI CCWGG 9 cut(s) 258, 997, 1155, 1486, 1567, 1639, 1693, 1726, 1870
Alw21I GWGCWC 5 cut(s) 1654, 1786, 1792, 1855, 2011
Alw26I GTCTC 1 cut(s) 449
Alw44I GTGCAC 2 cut(s) 1782, 1851
AlwI GGATC 3 cut(s) 361, 1128, 1450
Ama87I CYCGRG 3 cut(s) 507, 1210, 1971
Aor13HI TCCGGA 1 cut(s) 1019
AoxI GGCC 6 cut(s) 3, 29, 256, 1255, 1348, 1492
ApaI GGGCCC 1 cut(s) 33
ApaLI GTGCAC 2 cut(s) 1782, 1851
ApoI RAATTY 1 cut(s) 690
AspLEI GCGC 4 cut(s) 192, 194, 273, 1663
AspS9I GGNCC 8 cut(s) 29, 30, 629, 980, 1217, 1492, 1637, 1835
AsuC2I CCSGG 5 cut(s) 28, 801, 1074, 1211, 1212
AsuHPI GGTGA 8 cut(s) 76, 320, 464, 790, 815, 886, 1674, 2035
AvaI CYCGRG 3 cut(s) 507, 1210, 1971
AvaII GGWCC 5 cut(s) 629, 980, 1217, 1637, 1835
AxyI CCTNAGG 1 cut(s) 1302
BaeGI GKGCMC 3 cut(s) 33, 1786, 1855
BalI TGGCCA 2 cut(s) 1257, 1350
BanI GGYRCC 2 cut(s) 1327, 1885
BanII GRGCYC 2 cut(s) 33, 973
BbrPI CACGTG 1 cut(s) 1787
Bbv12I GWGCWC 5 cut(s) 1654, 1786, 1792, 1855, 2011
BbvCI CCTCAGC 1 cut(s) 612
BccI CCATC 8 cut(s) 110, 367, 830, 1301, 1804, 1849, 1867, 1979
BciT130I CCWGG 9 cut(s) 260, 999, 1157, 1488, 1569, 1641, 1695, 1728, 1872
BciVI GTATCC 1 cut(s) 1913
BcnI CCSGG 5 cut(s) 28, 801, 1074, 1211, 1212
BcoDI GTCTC 1 cut(s) 449
BcuI ACTAGT 1 cut(s) 842
BfaI CTAG 7 cut(s) 276, 540, 756, 843, 975, 1242, 1524
BfmI CTRYAG 4 cut(s) 142, 1383, 1812, 1914
BfoI RGCGCY 1 cut(s) 274
BfuAI ACCTGC 4 cut(s) 1151, 1366, 1627, 1873
BfuI GTATCC 1 cut(s) 1913
BlpI GCTNAGC 3 cut(s) 585, 1767, 2028
BmcAI AGTACT 1 cut(s) 760
Bme18I GGWCC 5 cut(s) 629, 980, 1217, 1637, 1835
BmeT110I CYCGRG 3 cut(s) 507, 1210, 1971
BmgBI CACGTC 2 cut(s) 138, 953
BmgT120I GGNCC 8 cut(s) 29, 30, 629, 980, 1217, 1492, 1637, 1835
BmiI GGNNCC 8 cut(s) 31, 66, 386, 972, 1329, 1493, 1837, 1887
BmrI ACTGGG 2 cut(s) 365, 458
BmsI GCATC 7 cut(s) 328, 502, 508, 799, 1064, 1103, 1732
BmuI ACTGGG 2 cut(s) 365, 458
BpmI CTGGAG 7 cut(s) 504, 549, 687, 942, 1401, 1470, 1716
Bpu10I CCTNAGC 3 cut(s) 195, 612, 1821
Bpu1102I GCTNAGC 3 cut(s) 585, 1767, 2028
BpuEI CTTGAG 1 cut(s) 1641
BpuMI CCSGG 5 cut(s) 28, 801, 1074, 1211, 1212
BsaAI YACGTR 1 cut(s) 1787
BsaJI CCNNGG 5 cut(s) 388, 799, 1155, 1210, 1487
BsaWI WCCGGW 2 cut(s) 305, 1019
BsaXI ACNNNNNCTCC 2 cut(s) 1915, 1945
Bse118I RCCGGY 3 cut(s) 86, 245, 1090
Bse1I ACTGG 7 cut(s) 228, 371, 453, 661, 967, 1603, 1800
Bse21I CCTNAGG 1 cut(s) 1302
Bse3DI GCAATG 1 cut(s) 921
BseAI TCCGGA 1 cut(s) 1019
BseBI CCWGG 9 cut(s) 260, 999, 1157, 1488, 1569, 1641, 1695, 1728, 1872
BseDI CCNNGG 5 cut(s) 388, 799, 1155, 1210, 1487
BseGI GGATG 4 cut(s) 171, 1312, 1723, 1796
BseMI GCAATG 1 cut(s) 921
BseNI ACTGG 7 cut(s) 228, 371, 453, 661, 967, 1603, 1800
BsePI GCGCGC 1 cut(s) 190
BseRI GAGGAG 6 cut(s) 13, 77, 103, 501, 1074, 1923
BseSI GKGCMC 3 cut(s) 33, 1786, 1855
BseYI CCCAGC 2 cut(s) 966, 1411
BsgI GTGCAG 2 cut(s) 1209, 1496
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 6 cut(s) 5, 31, 258, 1257, 1350, 1494
BshNI GGYRCC 2 cut(s) 1327, 1885
BsiHKAI GWGCWC 5 cut(s) 1654, 1786, 1792, 1855, 2011
BsiHKCI CYCGRG 3 cut(s) 507, 1210, 1971
BslFI GGGAC 3 cut(s) 116, 1621, 1821
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 3 cut(s) 116, 1621, 1821
BsmI GAATGC 1 cut(s) 1584
BsnI GGCC 6 cut(s) 5, 31, 258, 1257, 1350, 1494
BsoBI CYCGRG 3 cut(s) 507, 1210, 1971
Bsp120I GGGCCC 1 cut(s) 29
Bsp1286I GDGCHC 7 cut(s) 33, 973, 1654, 1786, 1792, 1855, 2011
Bsp13I TCCGGA 1 cut(s) 1019
Bsp143I GATC 5 cut(s) 366, 552, 1120, 1366, 1442
Bsp1720I GCTNAGC 3 cut(s) 585, 1767, 2028
BspANI GGCC 6 cut(s) 5, 31, 258, 1257, 1350, 1494
BspEI TCCGGA 1 cut(s) 1019
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 8 cut(s) 31, 66, 386, 972, 1329, 1493, 1837, 1887
BspMAI CTGCAG 2 cut(s) 1387, 1918
BspMI ACCTGC 4 cut(s) 1151, 1366, 1627, 1873
BspPI GGATC 3 cut(s) 361, 1128, 1450
BspT107I GGYRCC 2 cut(s) 1327, 1885
BsrDI GCAATG 1 cut(s) 921
BsrFI RCCGGY 3 cut(s) 86, 245, 1090
BsrI ACTGG 7 cut(s) 228, 371, 453, 661, 967, 1603, 1800
BssAI RCCGGY 3 cut(s) 86, 245, 1090
BssECI CCNNGG 5 cut(s) 388, 799, 1155, 1210, 1487
BssHII GCGCGC 1 cut(s) 190
BssMI GATC 5 cut(s) 366, 552, 1120, 1366, 1442
BssNAI GTATAC 1 cut(s) 773
BssT1I CCWWGG 1 cut(s) 388
Bst1107I GTATAC 1 cut(s) 773
Bst2UI CCWGG 9 cut(s) 260, 999, 1157, 1488, 1569, 1641, 1695, 1728, 1872
Bst4CI ACNGT 5 cut(s) 826, 870, 899, 1017, 1508
BstAPI GCANNNNNTGC 2 cut(s) 1238, 1508
BstBAI YACGTR 1 cut(s) 1787
BstEII GGTNACC 1 cut(s) 82
BstENI CCTNNNNNAGG 2 cut(s) 1269, 1485
BstF5I GGATG 4 cut(s) 171, 1312, 1723, 1796
BstFNI CGCG 1 cut(s) 192
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 4 cut(s) 192, 194, 273, 1663
BstKTI GATC 5 cut(s) 369, 555, 1123, 1369, 1445
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 5 cut(s) 366, 552, 1120, 1366, 1442
BstNI CCWGG 9 cut(s) 260, 999, 1157, 1488, 1569, 1641, 1695, 1728, 1872
BstPI GGTNACC 1 cut(s) 82
BstSFI CTRYAG 4 cut(s) 142, 1383, 1812, 1914
BstSLI GKGCMC 3 cut(s) 33, 1786, 1855
BstUI CGCG 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 1442
BstXI CCANNNNNNTGG 2 cut(s) 871, 1163
BstYI RGATCY 1 cut(s) 1442
BstZ17I GTATAC 1 cut(s) 773
Bsu36I CCTNAGG 1 cut(s) 1302
BsuI GTATCC 1 cut(s) 1913
BsuRI GGCC 6 cut(s) 5, 31, 258, 1257, 1350, 1494
BtgZI GCGATG 2 cut(s) 91, 102
BtrI CACGTC 2 cut(s) 138, 953
BtsCI GGATG 4 cut(s) 171, 1312, 1723, 1796
BtsIMutI CAGTG 2 cut(s) 960, 1513
BveI ACCTGC 4 cut(s) 1151, 1366, 1627, 1873
CfoI GCGC 4 cut(s) 192, 194, 273, 1663
Cfr10I RCCGGY 3 cut(s) 86, 245, 1090
Cfr13I GGNCC 8 cut(s) 29, 30, 629, 980, 1217, 1492, 1637, 1835
Cfr9I CCCGGG 1 cut(s) 1210
CsiI ACCWGGT 1 cut(s) 997
Csp6I GTAC 2 cut(s) 759, 827
CviAII CATG 2 cut(s) 556, 1373
CviQI GTAC 2 cut(s) 759, 827
DpnI GATC 5 cut(s) 368, 554, 1122, 1368, 1444
DpnII GATC 5 cut(s) 366, 552, 1120, 1366, 1442
EaeI YGGCCR 3 cut(s) 3, 1255, 1348
EciI GGCGGA 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 388
Eco24I GRGCYC 2 cut(s) 33, 973
Eco32I GATATC 2 cut(s) 1106, 1322
Eco47I GGWCC 5 cut(s) 629, 980, 1217, 1637, 1835
Eco57I CTGAAG 3 cut(s) 304, 455, 1971
Eco72I CACGTG 1 cut(s) 1787
Eco81I CCTNAGG 1 cut(s) 1302
Eco88I CYCGRG 3 cut(s) 507, 1210, 1971
Eco91I GGTNACC 1 cut(s) 82
EcoNI CCTNNNNNAGG 2 cut(s) 1269, 1485
EcoO65I GGTNACC 1 cut(s) 82
EcoRII CCWGG 9 cut(s) 258, 997, 1155, 1486, 1567, 1639, 1693, 1726, 1870
EcoRV GATATC 2 cut(s) 1106, 1322
EcoT14I CCWWGG 1 cut(s) 388
EcoT22I ATGCAT 1 cut(s) 1057
EcoT38I GRGCYC 2 cut(s) 33, 973
ErhI CCWWGG 1 cut(s) 388
FaeI CATG 2 cut(s) 559, 1376
FaqI GGGAC 3 cut(s) 116, 1621, 1821
FatI CATG 2 cut(s) 555, 1372
FauI CCCGC 2 cut(s) 83, 1543
FauNDI CATATG 2 cut(s) 1633, 1981
FblI GTMKAC 3 cut(s) 165, 772, 1559
FokI GGATG 4 cut(s) 158, 1319, 1710, 1783
FriOI GRGCYC 2 cut(s) 33, 973
FspBI CTAG 7 cut(s) 276, 540, 756, 843, 975, 1242, 1524
GlaI GCGC 4 cut(s) 191, 193, 272, 1662
GsaI CCCAGC 2 cut(s) 970, 1415
GsuI CTGGAG 7 cut(s) 504, 549, 687, 942, 1401, 1470, 1716
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 6 cut(s) 5, 31, 258, 1257, 1350, 1494
HhaI GCGC 4 cut(s) 192, 194, 273, 1663
Hin1II CATG 2 cut(s) 559, 1376
Hin6I GCGC 4 cut(s) 190, 192, 271, 1661
HinP1I GCGC 4 cut(s) 190, 192, 271, 1661
HincII GTYRAC 3 cut(s) 166, 654, 1709
HindII GTYRAC 3 cut(s) 166, 654, 1709
HpaI GTTAAC 1 cut(s) 654
HphI GGTGA 8 cut(s) 76, 320, 464, 790, 815, 886, 1674, 2035
Hpy166II GTNNAC 9 cut(s) 166, 446, 654, 773, 848, 1560, 1709, 1784, 1853
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 8 cut(s) 197, 483, 566, 645, 1020, 1304, 1418, 1758
Hpy8I GTNNAC 9 cut(s) 166, 446, 654, 773, 848, 1560, 1709, 1784, 1853
Hpy99I CGWCG 4 cut(s) 11, 167, 170, 367
HpyAV CCTTC 4 cut(s) 642, 1074, 1764, 1946
HpyCH4III ACNGT 5 cut(s) 826, 870, 899, 1017, 1508
HpyCH4IV ACGT 4 cut(s) 137, 603, 952, 1786
HpySE526I ACGT 4 cut(s) 137, 603, 952, 1786
Hsp92II CATG 2 cut(s) 559, 1376
HspAI GCGC 4 cut(s) 190, 192, 271, 1661
Kpn2I TCCGGA 1 cut(s) 1019
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
KspAI GTTAAC 1 cut(s) 654
Kzo9I GATC 5 cut(s) 366, 552, 1120, 1366, 1442
LweI GCATC 7 cut(s) 328, 502, 508, 799, 1064, 1103, 1732
MabI ACCWGGT 1 cut(s) 997
MaeI CTAG 7 cut(s) 276, 540, 756, 843, 975, 1242, 1524
MaeII ACGT 4 cut(s) 137, 603, 952, 1786
MaeIII GTNAC 7 cut(s) 82, 308, 502, 803, 1244, 1680, 2041
MalI GATC 5 cut(s) 368, 554, 1122, 1368, 1444
MboI GATC 5 cut(s) 366, 552, 1120, 1366, 1442
MboII GAAGA 2 cut(s) 461, 785
MfeI CAATTG 1 cut(s) 1114
MflI RGATCY 1 cut(s) 1442
MhlI GDGCHC 7 cut(s) 33, 973, 1654, 1786, 1792, 1855, 2011
MlsI TGGCCA 2 cut(s) 1257, 1350
MluCI AATT 7 cut(s) 529, 573, 690, 717, 852, 1114, 1249
MluNI TGGCCA 2 cut(s) 1257, 1350
MlyI GAGTC 3 cut(s) 119, 1603, 2049
Mox20I TGGCCA 2 cut(s) 1257, 1350
Mph1103I ATGCAT 1 cut(s) 1057
MroI TCCGGA 1 cut(s) 1019
MroNI GCCGGC 1 cut(s) 245
MscI TGGCCA 2 cut(s) 1257, 1350
MseI TTAA 4 cut(s) 462, 528, 653, 741
Msp20I TGGCCA 2 cut(s) 1257, 1350
MspA1I CMGCKG 3 cut(s) 1130, 1718, 1817
MunI CAATTG 1 cut(s) 1114
Mva1269I GAATGC 1 cut(s) 1584
MvaI CCWGG 9 cut(s) 260, 999, 1157, 1488, 1569, 1641, 1695, 1728, 1872
MvnI CGCG 1 cut(s) 192
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 5 cut(s) 28, 801, 1074, 1211, 1212
NdeI CATATG 2 cut(s) 1633, 1981
NdeII GATC 5 cut(s) 366, 552, 1120, 1366, 1442
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 2 cut(s) 559, 1376
NlaIV GGNNCC 8 cut(s) 31, 66, 386, 972, 1329, 1493, 1837, 1887
NmuCI GTSAC 5 cut(s) 82, 308, 803, 1680, 2041
NsiI ATGCAT 1 cut(s) 1057
PaeR7I CTCGAG 1 cut(s) 1971
PaqCI CACCTGC 4 cut(s) 1151, 1366, 1627, 1873
PauI GCGCGC 1 cut(s) 190
PctI GAATGC 1 cut(s) 1584
PdiI GCCGGC 1 cut(s) 247
PfeI GAWTC 8 cut(s) 35, 263, 302, 496, 620, 781, 1454, 1775
PflFI GACNNNGTC 1 cut(s) 128
PflMI CCANNNNNTGG 7 cut(s) 966, 1004, 1116, 1574, 1757, 1847, 1877
PfoI TCCNGGA 1 cut(s) 1693
PleI GAGTC 3 cut(s) 119, 1603, 2048
PmaCI CACGTG 1 cut(s) 1787
PmlI CACGTG 1 cut(s) 1787
PpsI GAGTC 3 cut(s) 119, 1603, 2048
Ppu21I YACGTR 1 cut(s) 1787
Psp6I CCWGG 9 cut(s) 258, 997, 1155, 1486, 1567, 1639, 1693, 1726, 1870
PspCI CACGTG 1 cut(s) 1787
PspEI GGTNACC 1 cut(s) 82
PspFI CCCAGC 2 cut(s) 966, 1411
PspGI CCWGG 9 cut(s) 258, 997, 1155, 1486, 1567, 1639, 1693, 1726, 1870
PspN4I GGNNCC 8 cut(s) 31, 66, 386, 972, 1329, 1493, 1837, 1887
PspOMI GGGCCC 1 cut(s) 29
PspPI GGNCC 8 cut(s) 29, 30, 629, 980, 1217, 1492, 1637, 1835
PspXI VCTCGAGB 1 cut(s) 1971
PstI CTGCAG 2 cut(s) 1387, 1918
PsuI RGATCY 1 cut(s) 1442
PsyI GACNNNGTC 1 cut(s) 128
PteI GCGCGC 1 cut(s) 190
PvuII CAGCTG 2 cut(s) 1130, 1718
RsaI GTAC 2 cut(s) 760, 828
RsaNI GTAC 2 cut(s) 759, 827
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 4 cut(s) 462, 528, 653, 741
Sau3AI GATC 5 cut(s) 366, 552, 1120, 1366, 1442
Sau96I GGNCC 8 cut(s) 29, 30, 629, 980, 1217, 1492, 1637, 1835
ScaI AGTACT 1 cut(s) 760
SchI GAGTC 3 cut(s) 119, 1603, 2049
SduI GDGCHC 7 cut(s) 33, 973, 1654, 1786, 1792, 1855, 2011
SexAI ACCWGGT 1 cut(s) 997
SfaNI GCATC 7 cut(s) 328, 502, 508, 799, 1064, 1103, 1732
SfcI CTRYAG 4 cut(s) 142, 1383, 1812, 1914
Sfr274I CTCGAG 1 cut(s) 1971
SgrDI CGTCGACG 1 cut(s) 164
SinI GGWCC 5 cut(s) 629, 980, 1217, 1637, 1835
SlaI CTCGAG 1 cut(s) 1971
SmaI CCCGGG 1 cut(s) 1212
SmlI CTYRAG 2 cut(s) 1656, 1971
SmoI CTYRAG 2 cut(s) 1656, 1971
SpeI ACTAGT 1 cut(s) 842
Sse9I AATT 7 cut(s) 529, 573, 690, 717, 852, 1114, 1249
SspMI CTAG 7 cut(s) 276, 540, 756, 843, 975, 1242, 1524
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 5 cut(s) 826, 870, 899, 1017, 1508
TaiI ACGT 4 cut(s) 140, 606, 955, 1789
TaqI TCGA 6 cut(s) 165, 211, 300, 365, 646, 1972
TasI AATT 7 cut(s) 529, 573, 690, 717, 852, 1114, 1249
TatI WGTACW 2 cut(s) 758, 826
TauI GCSGC 6 cut(s) 237, 252, 255, 258, 1264, 1820
TfiI GAWTC 8 cut(s) 35, 263, 302, 496, 620, 781, 1454, 1775
Tru1I TTAA 4 cut(s) 462, 528, 653, 741
Tru9I TTAA 4 cut(s) 462, 528, 653, 741
TscAI CASTG 2 cut(s) 967, 1513
TseFI GTSAC 5 cut(s) 82, 308, 803, 1680, 2041
Tsp45I GTSAC 5 cut(s) 82, 308, 803, 1680, 2041
TspDTI ATGAA 2 cut(s) 701, 894
TspMI CCCGGG 1 cut(s) 1210
TspRI CASTG 2 cut(s) 967, 1513
Tth111I GACNNNGTC 1 cut(s) 128
Van91I CCANNNNNTGG 7 cut(s) 966, 1004, 1116, 1574, 1757, 1847, 1877
VneI GTGCAC 2 cut(s) 1782, 1851
VpaK11BI GGWCC 5 cut(s) 629, 980, 1217, 1637, 1835
XagI CCTNNNNNAGG 2 cut(s) 1269, 1485
XapI RAATTY 1 cut(s) 690
XhoI CTCGAG 1 cut(s) 1971
XmaI CCCGGG 1 cut(s) 1210
XmiI GTMKAC 3 cut(s) 165, 772, 1559
XspI CTAG 7 cut(s) 276, 540, 756, 843, 975, 1242, 1524
ZrmI AGTACT 1 cut(s) 760
Zsp2I ATGCAT 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.