Rroxscaffold_7G00158400

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0009579
Physical Location & Seq
Reverse (-)
1865116 .. 1870247
5132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00158400.1

Sequence Viewer

Length: 2166 bp
ATGGCCGACGAAGCACAATACTCCTCCGGGCCCGATTCCGGCAGCAATAAGCGAAAATATGAGGAGCCGACTACCCGCAGGGTCACCGGCTTCTCAGCCCCCATCATCGCCTCCTCATCACCCGACTCTGTCCCCACGTCCTACAGCAGTGTTCCTCCGCCCGTCGACGACATCCAGCTCGCCAAGCAGCGCGCTCAGGAGATTGCTGCTCGATTGTTCAACAACGCCAGTAGCGGCGTTGCTGCCGCCGGTGGCGGCCTGGAATCTAAGCGCCCTAGAGTTGATAATGGCGGTGGCTTCGATTCCGGTGACAAGGGCTTCAGCTCTATTCCCTCTGATGCCAAGCCTTACTCAGCTCCATCGTCGATCCCAGTTTCGTATGGGTTCCAAGGAGGGAGCAAAAAGATTGATGTTCCAAATGGTAGGGTCGGTGTTATTATTGGTAAACTGGGTGAGACTATTAAGTATCTTCAGGCTCAGTCTGGAGGAGCTAAGATTCAAGTTACCCGAGATGCAGATGCCGACCTTAATTGCCCAACTAGGGAGGTGGAGATCATGGGAACTCCAGAACAAATTGCAAAAGCTGAGCATTTGATAAATGAAGTTCTTGCTGAGGCTGAATCAGGCGGTCCTGCCATAGTTTCTCGAAGGTTAACTGGACAAGCTGGAGCTGAAACATTTGTAATGAAAATTCCTAACAACAAGGTTGGTCTTGTAATTGGTAAACGAGGGGAAACTATTAAAAATATGCAAGCTAGTACTGCTGCTCGTCATTCCTTTGCATCTTCCCCCGGTGACACCTCAACCGAAAGGACAGTACAGATTGATGGAACTAGTGAACAAATTGAAGCTGCCAAACAGTTGGTGAATGAAGTTATTAGTGAGATAGTGGTTAACTTGACTTTAAGATCTGGACAGTGGTTAGATTGTATTGGACCATTGGTGACACCAACATGGAATCCTTTATGTTGGTGTTCCCTCAGCATCACTCTGAACCGTGTTAGAAATCCAGCAATGGCTGGAGGATATTCACAGCAGGGTTATCAAGCACGTCCTCCCACTGGCTGGGCTCCTAGTGGTCCACCAATGCAACAACCAGGTTATGGATATGGACAGTCTGGAGCATATTCTGGCACAACACCTCAGTATAATGCATCTCAGCCTTCTTATCCCGGTTATCCTCCTCAACCGGCATCTGGTGGATATCCCACCAATTGGGATCAGTCAGCTGTTGCACCAACTCAGCAGACCTCCCAGTCAGGTGGTTATGATTACTATTCCCAACAACCCTCACACCAACAGCAAAACCCTGGTGGTCCTGCTGCACCAGCAGATAATGCTAGTTACAATTATGGCCAGCCACCTATTTCAGGCTATAATCAGCAAGGACAAGGTTATCCTCAAGATGGCTATGGTGGATATCAGGCACCACCTCAATCTGGGTATGGCCAGCCACCTGCATACGATCAACATGGTTATCCTGCAGCCAACTATGGTAATGTGAGCAACCCAGCTCCAGATACCCATACTTCCTCTTATGGATCTCAGGGGGAATCAGCCCAAGCACCTCCTGTGCAGCCTGCTCCAGGGGGCCAGCAAGCATACAGTGCCACTCAACAGCCTAGCCCGAACCCCGCAAGTTATCCGCCCCAAGTGTCTACTCAGCCAGGTTATGGAATGCCCCCAACTTCACAAACTGGTTATGGGACTCAACCACCTGCTCAATCTGCATATGGACCTGGATATGGAGCACCTCAAGCGCAAAAGCCTCCTGTTCAGTCACCCACCACTCCTGGAGGATATGGTCAACCACCAGCTGTGCATCCAGGCTATCCCCATTCTCAGCCTCCACCTTCTGGATATGCTCAGCCTGATTCTGGTGCACGTGCTCCACCATCCAGTTATGGTTCTACAGGGGCTCAGGCAGGCTATGGTCCCCCATCTTATGGTGCACCGCCATCTGGTCAGCCAGGTTATGGGCAGGTGCCACCCTACAATACATCTTATGGTGCTGCAGGATACACACAGCCTCCTCCTGCGTATTCCGCTGAAGGAGCGAATGGAAACACTCGAGGTGCATATGATGGTGCTGGTGCTGGTGCTGGTGCTCCTGCTTCACAGACTGCTCAGCAAAGTGGAGTCGCCAAAACTTCCCCACAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0019439 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0035925 GO:0036464 GO:0036477 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:1990904 GO:2000112 GO:2000113 GO:2000377 GO:2000378 GO:2000628
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

721

Amino Acids

74.26

Weight (kDa)

5.73

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 134 - 201 2.6e-17 KH domain
KH_1 PF00013 226 - 291 7.9e-17 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 1465, 1726, 1972
AasI GACNNNNNNGTC 1 cut(s) 1255
Acc36I ACCTGC 3 cut(s) 1465, 1726, 1972
AccB1I GGYRCC 2 cut(s) 1426, 1984
AccB7I CCANNNNNTGG 7 cut(s) 1065, 1103, 1215, 1673, 1856, 1946, 1976
AccI GTMKAC 2 cut(s) 165, 1658
AccII CGCG 1 cut(s) 192
AclWI GGATC 3 cut(s) 361, 1227, 1549
AcoI YGGCCR 3 cut(s) 3, 1354, 1447
AcsI RAATTY 1 cut(s) 690
AcuI CTGAAG 3 cut(s) 304, 455, 2070
AcvI CACGTG 1 cut(s) 1886
AfaI GTAC 2 cut(s) 760, 819
AgsI TTSAA 3 cut(s) 220, 500, 848
AhlI ACTAGT 1 cut(s) 833
AjiI CACGTC 2 cut(s) 138, 1052
AjnI CCWGG 9 cut(s) 258, 1096, 1309, 1585, 1666, 1738, 1792, 1825, 1969
Alw21I GWGCWC 5 cut(s) 1753, 1885, 1891, 1954, 2110
Alw26I GTCTC 1 cut(s) 449
Alw44I GTGCAC 2 cut(s) 1881, 1950
AlwI GGATC 3 cut(s) 361, 1227, 1549
Ama87I CYCGRG 2 cut(s) 507, 2070
AoxI GGCC 6 cut(s) 3, 29, 256, 1354, 1447, 1591
ApaI GGGCCC 1 cut(s) 33
ApaLI GTGCAC 2 cut(s) 1881, 1950
ApoI RAATTY 1 cut(s) 690
AspLEI GCGC 4 cut(s) 192, 194, 273, 1762
AspS9I GGNCC 9 cut(s) 29, 30, 629, 935, 1079, 1316, 1591, 1736, 1934
AsuC2I CCSGG 3 cut(s) 28, 792, 1173
AsuHPI GGTGA 8 cut(s) 76, 111, 320, 464, 806, 877, 955, 1773
AvaI CYCGRG 2 cut(s) 507, 2070
AvaII GGWCC 6 cut(s) 629, 935, 1079, 1316, 1736, 1934
BaeGI GKGCMC 3 cut(s) 33, 1885, 1954
BalI TGGCCA 2 cut(s) 1356, 1449
BanI GGYRCC 2 cut(s) 1426, 1984
BanII GRGCYC 3 cut(s) 33, 1072, 1921
BbrPI CACGTG 1 cut(s) 1886
Bbv12I GWGCWC 5 cut(s) 1753, 1885, 1891, 1954, 2110
BbvCI CCTCAGC 2 cut(s) 612, 980
BccI CCATC 8 cut(s) 110, 367, 821, 1400, 1903, 1948, 1966, 2078
BciT130I CCWGG 9 cut(s) 260, 1098, 1311, 1587, 1668, 1740, 1794, 1827, 1971
BciVI GTATCC 1 cut(s) 2012
BcnI CCSGG 3 cut(s) 28, 792, 1173
BcoDI GTCTC 1 cut(s) 449
BcuI ACTAGT 1 cut(s) 833
BfaI CTAG 7 cut(s) 276, 540, 756, 834, 1074, 1341, 1623
BfmI CTRYAG 4 cut(s) 142, 1482, 1911, 2013
BfoI RGCGCY 1 cut(s) 274
BfuAI ACCTGC 3 cut(s) 1465, 1726, 1972
BfuI GTATCC 1 cut(s) 2012
BglII AGATCT 1 cut(s) 908
BlpI GCTNAGC 3 cut(s) 585, 1866, 2127
BmcAI AGTACT 1 cut(s) 760
Bme18I GGWCC 6 cut(s) 629, 935, 1079, 1316, 1736, 1934
BmeT110I CYCGRG 2 cut(s) 507, 2070
BmgBI CACGTC 2 cut(s) 138, 1052
BmgT120I GGNCC 9 cut(s) 29, 30, 629, 935, 1079, 1316, 1591, 1736, 1934
BmiI GGNNCC 8 cut(s) 31, 66, 386, 1071, 1428, 1592, 1936, 1986
BmrI ACTGGG 3 cut(s) 365, 458, 1249
BmsI GCATC 8 cut(s) 328, 502, 508, 791, 993, 1163, 1202, 1831
BmuI ACTGGG 3 cut(s) 365, 458, 1249
BpmI CTGGAG 8 cut(s) 504, 549, 687, 1041, 1140, 1500, 1569, 1815
Bpu10I CCTNAGC 4 cut(s) 195, 612, 980, 1920
Bpu1102I GCTNAGC 3 cut(s) 585, 1866, 2127
BpuEI CTTGAG 2 cut(s) 1386, 1740
BpuMI CCSGG 3 cut(s) 28, 792, 1173
BsaAI YACGTR 1 cut(s) 1886
BsaJI CCNNGG 4 cut(s) 388, 790, 1309, 1586
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 2014, 2044
Bse118I RCCGGY 3 cut(s) 86, 248, 1189
Bse1I ACTGG 8 cut(s) 228, 371, 453, 661, 1066, 1255, 1702, 1899
Bse3DI GCAATG 1 cut(s) 1020
BseBI CCWGG 9 cut(s) 260, 1098, 1311, 1587, 1668, 1740, 1794, 1827, 1971
BseDI CCNNGG 4 cut(s) 388, 790, 1309, 1586
BseGI GGATG 3 cut(s) 171, 1822, 1895
BseMI GCAATG 1 cut(s) 1020
BseNI ACTGG 8 cut(s) 228, 371, 453, 661, 1066, 1255, 1702, 1899
BsePI GCGCGC 1 cut(s) 190
BseRI GAGGAG 6 cut(s) 13, 77, 103, 501, 1173, 2022
BseSI GKGCMC 3 cut(s) 33, 1885, 1954
BseYI CCCAGC 2 cut(s) 1065, 1510
BsgI GTGCAG 2 cut(s) 1308, 1595
Bsh1236I CGCG 1 cut(s) 192
BshFI GGCC 6 cut(s) 5, 31, 258, 1356, 1449, 1593
BshNI GGYRCC 2 cut(s) 1426, 1984
BsiHKAI GWGCWC 5 cut(s) 1753, 1885, 1891, 1954, 2110
BsiHKCI CYCGRG 2 cut(s) 507, 2070
BsiSI CCGG 8 cut(s) 27, 39, 87, 249, 306, 792, 1173, 1190
BslFI GGGAC 3 cut(s) 116, 1720, 1920
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 3 cut(s) 116, 1720, 1920
BsmI GAATGC 1 cut(s) 1683
BsnI GGCC 6 cut(s) 5, 31, 258, 1356, 1449, 1593
BsoBI CYCGRG 2 cut(s) 507, 2070
Bsp120I GGGCCC 1 cut(s) 29
Bsp1286I GDGCHC 8 cut(s) 33, 1072, 1753, 1885, 1891, 1921, 1954, 2110
Bsp143I GATC 6 cut(s) 366, 552, 908, 1219, 1465, 1541
Bsp1720I GCTNAGC 3 cut(s) 585, 1866, 2127
BspANI GGCC 6 cut(s) 5, 31, 258, 1356, 1449, 1593
BspFNI CGCG 1 cut(s) 192
BspLI GGNNCC 8 cut(s) 31, 66, 386, 1071, 1428, 1592, 1936, 1986
BspMAI CTGCAG 2 cut(s) 1486, 2017
BspMI ACCTGC 3 cut(s) 1465, 1726, 1972
BspPI GGATC 3 cut(s) 361, 1227, 1549
BspT107I GGYRCC 2 cut(s) 1426, 1984
BsrDI GCAATG 1 cut(s) 1020
BsrFI RCCGGY 3 cut(s) 86, 248, 1189
BsrI ACTGG 8 cut(s) 228, 371, 453, 661, 1066, 1255, 1702, 1899
BssAI RCCGGY 3 cut(s) 86, 248, 1189
BssECI CCNNGG 4 cut(s) 388, 790, 1309, 1586
BssHII GCGCGC 1 cut(s) 190
BssMI GATC 6 cut(s) 366, 552, 908, 1219, 1465, 1541
BssT1I CCWWGG 1 cut(s) 388
Bst2UI CCWGG 9 cut(s) 260, 1098, 1311, 1587, 1668, 1740, 1794, 1827, 1971
Bst4CI ACNGT 6 cut(s) 817, 861, 918, 998, 1116, 1607
BstAPI GCANNNNNTGC 2 cut(s) 1337, 1607
BstBAI YACGTR 1 cut(s) 1886
BstC8I GCNNGC 9 cut(s) 180, 192, 753, 1358, 1451, 1581, 1595, 1599, 1927
BstEII GGTNACC 1 cut(s) 82
BstENI CCTNNNNNAGG 2 cut(s) 1368, 1584
BstF5I GGATG 3 cut(s) 171, 1822, 1895
BstFNI CGCG 1 cut(s) 192
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 4 cut(s) 192, 194, 273, 1762
BstKTI GATC 6 cut(s) 369, 555, 911, 1222, 1468, 1544
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 6 cut(s) 366, 552, 908, 1219, 1465, 1541
BstNI CCWGG 9 cut(s) 260, 1098, 1311, 1587, 1668, 1740, 1794, 1827, 1971
BstPI GGTNACC 1 cut(s) 82
BstSFI CTRYAG 4 cut(s) 142, 1482, 1911, 2013
BstSLI GKGCMC 3 cut(s) 33, 1885, 1954
BstUI CGCG 1 cut(s) 192
BstX2I RGATCY 2 cut(s) 908, 1541
BstXI CCANNNNNNTGG 2 cut(s) 862, 1262
BstYI RGATCY 2 cut(s) 908, 1541
BsuI GTATCC 1 cut(s) 2012
BsuRI GGCC 6 cut(s) 5, 31, 258, 1356, 1449, 1593
BtgZI GCGATG 1 cut(s) 91
BtrI CACGTC 2 cut(s) 138, 1052
BtsCI GGATG 3 cut(s) 171, 1822, 1895
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 4 cut(s) 154, 923, 1059, 1612
BveI ACCTGC 3 cut(s) 1465, 1726, 1972
Cac8I GCNNGC 9 cut(s) 180, 192, 753, 1358, 1451, 1581, 1595, 1599, 1927
CfoI GCGC 4 cut(s) 192, 194, 273, 1762
Cfr10I RCCGGY 3 cut(s) 86, 248, 1189
Cfr13I GGNCC 9 cut(s) 29, 30, 629, 935, 1079, 1316, 1591, 1736, 1934
CsiI ACCWGGT 1 cut(s) 1096
Csp6I GTAC 2 cut(s) 759, 818
CviAII CATG 3 cut(s) 556, 954, 1472
CviQI GTAC 2 cut(s) 759, 818
DpnI GATC 6 cut(s) 368, 554, 910, 1221, 1467, 1543
DpnII GATC 6 cut(s) 366, 552, 908, 1219, 1465, 1541
DrdI GACNNNNNNGTC 1 cut(s) 1255
DseDI GACNNNNNNGTC 1 cut(s) 1255
EaeI YGGCCR 3 cut(s) 3, 1354, 1447
EciI GGCGGA 2 cut(s) 147, 1635
Eco130I CCWWGG 1 cut(s) 388
Eco24I GRGCYC 3 cut(s) 33, 1072, 1921
Eco32I GATATC 2 cut(s) 1205, 1421
Eco47I GGWCC 6 cut(s) 629, 935, 1079, 1316, 1736, 1934
Eco57I CTGAAG 3 cut(s) 304, 455, 2070
Eco72I CACGTG 1 cut(s) 1886
Eco88I CYCGRG 2 cut(s) 507, 2070
Eco91I GGTNACC 1 cut(s) 82
EcoNI CCTNNNNNAGG 2 cut(s) 1368, 1584
EcoO65I GGTNACC 1 cut(s) 82
EcoRII CCWGG 9 cut(s) 258, 1096, 1309, 1585, 1666, 1738, 1792, 1825, 1969
EcoRV GATATC 2 cut(s) 1205, 1421
EcoT14I CCWWGG 1 cut(s) 388
EcoT22I ATGCAT 1 cut(s) 1156
EcoT38I GRGCYC 3 cut(s) 33, 1072, 1921
ErhI CCWWGG 1 cut(s) 388
FaeI CATG 3 cut(s) 559, 957, 1475
FaqI GGGAC 3 cut(s) 116, 1720, 1920
FatI CATG 3 cut(s) 555, 953, 1471
FauI CCCGC 2 cut(s) 83, 1642
FauNDI CATATG 2 cut(s) 1732, 2080
FblI GTMKAC 2 cut(s) 165, 1658
FokI GGATG 3 cut(s) 158, 1809, 1882
FriOI GRGCYC 3 cut(s) 33, 1072, 1921
FspBI CTAG 7 cut(s) 276, 540, 756, 834, 1074, 1341, 1623
GlaI GCGC 4 cut(s) 191, 193, 272, 1761
GsaI CCCAGC 2 cut(s) 1069, 1514
GsuI CTGGAG 8 cut(s) 504, 549, 687, 1041, 1140, 1500, 1569, 1815
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 6 cut(s) 5, 31, 258, 1356, 1449, 1593
HapII CCGG 8 cut(s) 27, 39, 87, 249, 306, 792, 1173, 1190
HhaI GCGC 4 cut(s) 192, 194, 273, 1762
Hin1II CATG 3 cut(s) 559, 957, 1475
Hin6I GCGC 4 cut(s) 190, 192, 271, 1760
HinP1I GCGC 4 cut(s) 190, 192, 271, 1760
HincII GTYRAC 4 cut(s) 166, 654, 895, 1808
HindII GTYRAC 4 cut(s) 166, 654, 895, 1808
HpaI GTTAAC 2 cut(s) 654, 895
HpaII CCGG 8 cut(s) 27, 39, 87, 249, 306, 792, 1173, 1190
HphI GGTGA 8 cut(s) 76, 111, 320, 464, 806, 877, 955, 1773
Hpy188I TCNGA 2 cut(s) 337, 993
Hpy188III TCNNGA 9 cut(s) 197, 483, 566, 645, 912, 1119, 1403, 1517, 1857
Hpy99I CGWCG 4 cut(s) 11, 167, 170, 367
HpyAV CCTTC 4 cut(s) 642, 1173, 1863, 2045
HpyCH4III ACNGT 6 cut(s) 817, 861, 918, 998, 1116, 1607
HpyCH4IV ACGT 3 cut(s) 137, 1051, 1885
HpySE526I ACGT 3 cut(s) 137, 1051, 1885
Hsp92II CATG 3 cut(s) 559, 957, 1475
HspAI GCGC 4 cut(s) 190, 192, 271, 1760
KspAI GTTAAC 2 cut(s) 654, 895
Kzo9I GATC 6 cut(s) 366, 552, 908, 1219, 1465, 1541
LweI GCATC 8 cut(s) 328, 502, 508, 791, 993, 1163, 1202, 1831
MabI ACCWGGT 1 cut(s) 1096
MaeI CTAG 7 cut(s) 276, 540, 756, 834, 1074, 1341, 1623
MaeII ACGT 3 cut(s) 137, 1051, 1885
MaeIII GTNAC 7 cut(s) 82, 308, 502, 794, 943, 1343, 1779
MalI GATC 6 cut(s) 368, 554, 910, 1221, 1467, 1543
MboI GATC 6 cut(s) 366, 552, 908, 1219, 1465, 1541
MboII GAAGA 2 cut(s) 461, 777
MfeI CAATTG 1 cut(s) 1213
MflI RGATCY 2 cut(s) 908, 1541
MhlI GDGCHC 8 cut(s) 33, 1072, 1753, 1885, 1891, 1921, 1954, 2110
MlsI TGGCCA 2 cut(s) 1356, 1449
MluCI AATT 7 cut(s) 529, 573, 690, 717, 843, 1213, 1348
MluNI TGGCCA 2 cut(s) 1356, 1449
MlyI GAGTC 3 cut(s) 119, 1702, 2148
Mox20I TGGCCA 2 cut(s) 1356, 1449
Mph1103I ATGCAT 1 cut(s) 1156
MscI TGGCCA 2 cut(s) 1356, 1449
MseI TTAA 6 cut(s) 462, 528, 653, 741, 894, 905
MslI CAYNNNNRTG 1 cut(s) 952
Msp20I TGGCCA 2 cut(s) 1356, 1449
MspA1I CMGCKG 3 cut(s) 1229, 1817, 2048
MspI CCGG 8 cut(s) 27, 39, 87, 249, 306, 792, 1173, 1190
MunI CAATTG 1 cut(s) 1213
Mva1269I GAATGC 1 cut(s) 1683
MvaI CCWGG 9 cut(s) 260, 1098, 1311, 1587, 1668, 1740, 1794, 1827, 1971
MvnI CGCG 1 cut(s) 192
NciI CCSGG 3 cut(s) 28, 792, 1173
NdeI CATATG 2 cut(s) 1732, 2080
NdeII GATC 6 cut(s) 366, 552, 908, 1219, 1465, 1541
NlaIII CATG 3 cut(s) 559, 957, 1475
NlaIV GGNNCC 8 cut(s) 31, 66, 386, 1071, 1428, 1592, 1936, 1986
NmuCI GTSAC 5 cut(s) 82, 308, 794, 943, 1779
NsiI ATGCAT 1 cut(s) 1156
PaeR7I CTCGAG 1 cut(s) 2070
PaqCI CACCTGC 3 cut(s) 1465, 1726, 1972
PauI GCGCGC 1 cut(s) 190
PctI GAATGC 1 cut(s) 1683
PfeI GAWTC 8 cut(s) 35, 263, 302, 496, 620, 958, 1553, 1874
PflFI GACNNNGTC 1 cut(s) 128
PflMI CCANNNNNTGG 7 cut(s) 1065, 1103, 1215, 1673, 1856, 1946, 1976
PfoI TCCNGGA 1 cut(s) 1792
PleI GAGTC 3 cut(s) 119, 1702, 2147
PmaCI CACGTG 1 cut(s) 1886
PmlI CACGTG 1 cut(s) 1886
PpsI GAGTC 3 cut(s) 119, 1702, 2147
Ppu21I YACGTR 1 cut(s) 1886
Psp6I CCWGG 9 cut(s) 258, 1096, 1309, 1585, 1666, 1738, 1792, 1825, 1969
PspCI CACGTG 1 cut(s) 1886
PspEI GGTNACC 1 cut(s) 82
PspFI CCCAGC 2 cut(s) 1065, 1510
PspGI CCWGG 9 cut(s) 258, 1096, 1309, 1585, 1666, 1738, 1792, 1825, 1969
PspN4I GGNNCC 8 cut(s) 31, 66, 386, 1071, 1428, 1592, 1936, 1986
PspOMI GGGCCC 1 cut(s) 29
PspPI GGNCC 9 cut(s) 29, 30, 629, 935, 1079, 1316, 1591, 1736, 1934
PspXI VCTCGAGB 1 cut(s) 2070
PstI CTGCAG 2 cut(s) 1486, 2017
PsuI RGATCY 2 cut(s) 908, 1541
PsyI GACNNNGTC 1 cut(s) 128
PteI GCGCGC 1 cut(s) 190
PvuII CAGCTG 2 cut(s) 1229, 1817
RsaI GTAC 2 cut(s) 760, 819
RsaNI GTAC 2 cut(s) 759, 818
RseI CAYNNNNRTG 1 cut(s) 952
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 6 cut(s) 462, 528, 653, 741, 894, 905
Sau3AI GATC 6 cut(s) 366, 552, 908, 1219, 1465, 1541
Sau96I GGNCC 9 cut(s) 29, 30, 629, 935, 1079, 1316, 1591, 1736, 1934
ScaI AGTACT 1 cut(s) 760
SchI GAGTC 3 cut(s) 119, 1702, 2148
SduI GDGCHC 8 cut(s) 33, 1072, 1753, 1885, 1891, 1921, 1954, 2110
SexAI ACCWGGT 1 cut(s) 1096
SfaNI GCATC 8 cut(s) 328, 502, 508, 791, 993, 1163, 1202, 1831
SfcI CTRYAG 4 cut(s) 142, 1482, 1911, 2013
Sfr274I CTCGAG 1 cut(s) 2070
SgrAI CRCCGGYG 1 cut(s) 248
SgrDI CGTCGACG 1 cut(s) 164
SinI GGWCC 6 cut(s) 629, 935, 1079, 1316, 1736, 1934
SlaI CTCGAG 1 cut(s) 2070
SmiMI CAYNNNNRTG 1 cut(s) 952
SmlI CTYRAG 3 cut(s) 1401, 1755, 2070
SmoI CTYRAG 3 cut(s) 1401, 1755, 2070
SpeI ACTAGT 1 cut(s) 833
Sse9I AATT 7 cut(s) 529, 573, 690, 717, 843, 1213, 1348
SspMI CTAG 7 cut(s) 276, 540, 756, 834, 1074, 1341, 1623
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 6 cut(s) 817, 861, 918, 998, 1116, 1607
TaiI ACGT 3 cut(s) 140, 1054, 1888
TaqI TCGA 6 cut(s) 165, 211, 300, 365, 646, 2071
TasI AATT 7 cut(s) 529, 573, 690, 717, 843, 1213, 1348
TatI WGTACW 2 cut(s) 758, 817
TauI GCSGC 3 cut(s) 237, 248, 258
TfiI GAWTC 8 cut(s) 35, 263, 302, 496, 620, 958, 1553, 1874
Tru1I TTAA 6 cut(s) 462, 528, 653, 741, 894, 905
Tru9I TTAA 6 cut(s) 462, 528, 653, 741, 894, 905
TscAI CASTG 4 cut(s) 154, 923, 1066, 1612
TseFI GTSAC 5 cut(s) 82, 308, 794, 943, 1779
Tsp45I GTSAC 5 cut(s) 82, 308, 794, 943, 1779
TspDTI ATGAA 3 cut(s) 615, 701, 885
TspRI CASTG 4 cut(s) 154, 923, 1066, 1612
Tth111I GACNNNGTC 1 cut(s) 128
Van91I CCANNNNNTGG 7 cut(s) 1065, 1103, 1215, 1673, 1856, 1946, 1976
VneI GTGCAC 2 cut(s) 1881, 1950
VpaK11BI GGWCC 6 cut(s) 629, 935, 1079, 1316, 1736, 1934
XagI CCTNNNNNAGG 2 cut(s) 1368, 1584
XapI RAATTY 1 cut(s) 690
XhoI CTCGAG 1 cut(s) 2070
XmiI GTMKAC 2 cut(s) 165, 1658
XspI CTAG 7 cut(s) 276, 540, 756, 834, 1074, 1341, 1623
ZrmI AGTACT 1 cut(s) 760
Zsp2I ATGCAT 1 cut(s) 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.