Rmu_co8240427.1_g000001

Far upstream element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8240427.1
OG0009579
Physical Location & Seq
Reverse (-)
2 .. 771
770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8240427.1_g000001.1.cds

Sequence Viewer

Length: 770 bp
gcggataatgctagttacaattatggccagccgcctatttcaggctataatcagcaaggacaaggttatcctcaagatggctatggtggatatcaggcaccacctcaatctgggtatggccagccacctgcatacgatcaacatggttatcctgcagccaactatggtaatgtgagcaacccagctccagatacccatacttcctcttatggatctcagggggaatcagcccaagcacctcctgtgcagcctgctccagggggccagcaagcatacagtgccactcaacagcctagcccgaacccctcaagttatccgccccaagtgtctactcagccaggttatggaatgcccccaacttctcaaactggttatgggactcaaccacctgctcaatctgcatatggacctggatatggagcacctccagcgcaaaagcctcctgctcagtcacccaccactcctggaggatatggtcaaccaccagctgtgcatccaggctatccccattctcagcctccaccttctggatatgctcagcctgattctggtgcacgtgctccaccatccagttatggttctacagcggctcaggcaggctatggtcccccatcttatggtgcaccgccatctggtcagccaggttatgggcaggtgccaccctacaatacatcttatggtgctgcaggatacacacagcctcctcctgcgtattctgctgaaggagcgaatggaaacactcgaggtgcatatgatggtgctggtgctgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001505 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010586 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0010984 GO:0010985 GO:0010988 GO:0010989 GO:0016070 GO:0016071 GO:0017091 GO:0017148 GO:0019219 GO:0019222 GO:0019439 GO:0030425 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032991 GO:0034097 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0034660 GO:0035770 GO:0035925 GO:0036464 GO:0036477 GO:0042221 GO:0042995 GO:0043005 GO:0043025 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043487 GO:0043488 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044297 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045019 GO:0045428 GO:0045935 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0070013 GO:0070887 GO:0071310 GO:0071345 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097447 GO:0097458 GO:0120025 GO:0120038 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311 GO:1903313 GO:1903426 GO:1903427 GO:1904406 GO:1990904 GO:2000112 GO:2000113 GO:2000377 GO:2000378 GO:2000628
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

257

Amino Acids

25.74

Weight (kDa)

4.9

Isoelectric Point (pI)

56.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 136, 397, 643
Acc36I ACCTGC 3 cut(s) 136, 397, 643
AccB1I GGYRCC 2 cut(s) 97, 655
AccB7I CCANNNNNTGG 4 cut(s) 344, 527, 617, 647
AccI GTMKAC 1 cut(s) 329
AciI CCGC 5 cut(s) 2, 32, 317, 587, 626
AclWI GGATC 1 cut(s) 220
AcoI YGGCCR 2 cut(s) 25, 118
AcuI CTGAAG 1 cut(s) 741
AcvI CACGTG 1 cut(s) 557
AjnI CCWGG 6 cut(s) 256, 337, 409, 463, 496, 640
AluBI AGCT 2 cut(s) 185, 488
AluI AGCT 2 cut(s) 185, 488
Alw21I GWGCWC 4 cut(s) 424, 556, 562, 625
Alw44I GTGCAC 2 cut(s) 552, 621
AlwI GGATC 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 741
AoxI GGCC 3 cut(s) 25, 118, 262
ApaLI GTGCAC 2 cut(s) 552, 621
ApeKI GCWGC 3 cut(s) 155, 247, 683
AspLEI GCGC 1 cut(s) 433
AspS9I GGNCC 3 cut(s) 262, 407, 605
AsuHPI GGTGA 1 cut(s) 444
AvaI CYCGRG 1 cut(s) 741
AvaII GGWCC 2 cut(s) 407, 605
BaeGI GKGCMC 2 cut(s) 556, 625
BalI TGGCCA 2 cut(s) 27, 120
BanI GGYRCC 2 cut(s) 97, 655
BbrPI CACGTG 1 cut(s) 557
Bbv12I GWGCWC 4 cut(s) 424, 556, 562, 625
BbvI GCAGC 3 cut(s) 167, 259, 670
BccI CCATC 5 cut(s) 71, 574, 619, 637, 749
BciT130I CCWGG 6 cut(s) 258, 339, 411, 465, 498, 642
BciVI GTATCC 1 cut(s) 683
BfaI CTAG 2 cut(s) 12, 294
BfmI CTRYAG 3 cut(s) 153, 582, 684
BfuAI ACCTGC 3 cut(s) 136, 397, 643
BfuI GTATCC 1 cut(s) 683
BisI GCNGC 5 cut(s) 32, 156, 248, 588, 684
BlpI GCTNAGC 1 cut(s) 537
BlsI GCNGC 5 cut(s) 33, 157, 249, 589, 685
Bme1390I CCNGG 6 cut(s) 258, 339, 411, 465, 498, 642
Bme18I GGWCC 2 cut(s) 407, 605
BmeT110I CYCGRG 1 cut(s) 741
BmgT120I GGNCC 3 cut(s) 262, 407, 605
BmiI GGNNCC 4 cut(s) 99, 263, 607, 657
BmrFI CCNGG 6 cut(s) 258, 339, 411, 465, 498, 642
BmsI GCATC 1 cut(s) 502
BpmI CTGGAG 4 cut(s) 171, 240, 411, 486
Bpu10I CCTNAGC 1 cut(s) 591
Bpu1102I GCTNAGC 1 cut(s) 537
BpuEI CTTGAG 2 cut(s) 57, 292
BsaAI YACGTR 1 cut(s) 557
BsaJI CCNNGG 1 cut(s) 257
BsaXI ACNNNNNCTCC 2 cut(s) 685, 715
Bse1I ACTGG 2 cut(s) 373, 570
BseBI CCWGG 6 cut(s) 258, 339, 411, 465, 498, 642
BseDI CCNNGG 1 cut(s) 257
BseGI GGATG 2 cut(s) 493, 566
BseMII CTCAG 6 cut(s) 230, 347, 461, 527, 551, 605
BseNI ACTGG 2 cut(s) 373, 570
BseRI GAGGAG 1 cut(s) 693
BseSI GKGCMC 2 cut(s) 556, 625
BseXI GCAGC 3 cut(s) 167, 259, 670
BseYI CCCAGC 1 cut(s) 181
BsgI GTGCAG 1 cut(s) 266
BshFI GGCC 3 cut(s) 27, 120, 264
BshNI GGYRCC 2 cut(s) 97, 655
BsiHKAI GWGCWC 4 cut(s) 424, 556, 562, 625
BsiHKCI CYCGRG 1 cut(s) 741
BslFI GGGAC 2 cut(s) 391, 591
BsmFI GGGAC 2 cut(s) 391, 591
BsmI GAATGC 1 cut(s) 354
BsnI GGCC 3 cut(s) 27, 120, 264
BsoBI CYCGRG 1 cut(s) 741
Bsp1286I GDGCHC 4 cut(s) 424, 556, 562, 625
Bsp143I GATC 2 cut(s) 136, 212
Bsp1720I GCTNAGC 1 cut(s) 537
BspACI CCGC 5 cut(s) 2, 32, 317, 587, 626
BspANI GGCC 3 cut(s) 27, 120, 264
BspCNI CTCAG 6 cut(s) 229, 346, 460, 526, 550, 604
BspLI GGNNCC 4 cut(s) 99, 263, 607, 657
BspMAI CTGCAG 2 cut(s) 157, 688
BspMI ACCTGC 3 cut(s) 136, 397, 643
BspPI GGATC 1 cut(s) 220
BspT107I GGYRCC 2 cut(s) 97, 655
BsrI ACTGG 2 cut(s) 373, 570
BssECI CCNNGG 1 cut(s) 257
BssMI GATC 2 cut(s) 136, 212
Bst2UI CCWGG 6 cut(s) 258, 339, 411, 465, 498, 642
Bst4CI ACNGT 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 278
BstBAI YACGTR 1 cut(s) 557
BstC8I GCNNGC 6 cut(s) 29, 122, 252, 266, 270, 598
BstDEI CTNAG 6 cut(s) 216, 333, 447, 513, 537, 591
BstENI CCTNNNNNAGG 2 cut(s) 39, 255
BstF5I GGATG 2 cut(s) 493, 566
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 2 cut(s) 139, 215
BstMBI GATC 2 cut(s) 136, 212
BstMWI GCNNNNNNNGC 7 cut(s) 8, 278, 398, 428, 593, 716, 725
BstNI CCWGG 6 cut(s) 258, 339, 411, 465, 498, 642
BstSCI CCNGG 6 cut(s) 256, 337, 409, 463, 496, 640
BstSFI CTRYAG 3 cut(s) 153, 582, 684
BstSLI GKGCMC 2 cut(s) 556, 625
BstV1I GCAGC 3 cut(s) 167, 259, 670
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 3 cut(s) 27, 120, 264
BtsCI GGATG 2 cut(s) 493, 566
BtsIMutI CAGTG 1 cut(s) 283
BveI ACCTGC 3 cut(s) 136, 397, 643
Cac8I GCNNGC 6 cut(s) 29, 122, 252, 266, 270, 598
CfoI GCGC 1 cut(s) 433
Cfr13I GGNCC 3 cut(s) 262, 407, 605
CviAII CATG 1 cut(s) 143
DdeI CTNAG 6 cut(s) 216, 333, 447, 513, 537, 591
DpnI GATC 2 cut(s) 138, 214
DpnII GATC 2 cut(s) 136, 212
EaeI YGGCCR 2 cut(s) 25, 118
EciI GGCGGA 1 cut(s) 306
Eco32I GATATC 1 cut(s) 92
Eco47I GGWCC 2 cut(s) 407, 605
Eco57I CTGAAG 1 cut(s) 741
Eco72I CACGTG 1 cut(s) 557
Eco88I CYCGRG 1 cut(s) 741
EcoNI CCTNNNNNAGG 2 cut(s) 39, 255
EcoRII CCWGG 6 cut(s) 256, 337, 409, 463, 496, 640
EcoRV GATATC 1 cut(s) 92
FaeI CATG 1 cut(s) 146
FaqI GGGAC 2 cut(s) 391, 591
FatI CATG 1 cut(s) 142
FauNDI CATATG 2 cut(s) 403, 751
FblI GTMKAC 1 cut(s) 329
Fnu4HI GCNGC 5 cut(s) 32, 156, 248, 588, 684
FokI GGATG 2 cut(s) 480, 553
Fsp4HI GCNGC 5 cut(s) 32, 156, 248, 588, 684
FspBI CTAG 2 cut(s) 12, 294
GlaI GCGC 1 cut(s) 432
GluI GCNGC 5 cut(s) 32, 156, 248, 588, 684
GsaI CCCAGC 1 cut(s) 185
GsuI CTGGAG 4 cut(s) 171, 240, 411, 486
HaeIII GGCC 3 cut(s) 27, 120, 264
HhaI GCGC 1 cut(s) 433
Hin1II CATG 1 cut(s) 146
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HincII GTYRAC 1 cut(s) 479
HindII GTYRAC 1 cut(s) 479
HinfI GANTC 3 cut(s) 224, 379, 545
HphI GGTGA 1 cut(s) 444
Hpy166II GTNNAC 4 cut(s) 330, 479, 554, 623
Hpy188III TCNNGA 3 cut(s) 74, 188, 528
Hpy8I GTNNAC 4 cut(s) 330, 479, 554, 623
HpyAV CCTTC 2 cut(s) 534, 716
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 9 cut(s) 131, 155, 247, 401, 493, 554, 623, 686, 749
HpyF10VI GCNNNNNNNGC 7 cut(s) 8, 278, 398, 428, 593, 716, 725
HpyF3I CTNAG 6 cut(s) 216, 333, 447, 513, 537, 591
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 1 cut(s) 146
HspAI GCGC 1 cut(s) 431
Kzo9I GATC 2 cut(s) 136, 212
LmnI GCTCC 5 cut(s) 190, 259, 419, 565, 725
Lsp1109I GCAGC 3 cut(s) 167, 259, 670
LweI GCATC 1 cut(s) 502
MaeI CTAG 2 cut(s) 12, 294
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 2 cut(s) 14, 450
MalI GATC 2 cut(s) 138, 214
MboI GATC 2 cut(s) 136, 212
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 4 cut(s) 424, 556, 562, 625
MlsI TGGCCA 2 cut(s) 27, 120
MluCI AATT 1 cut(s) 19
MluNI TGGCCA 2 cut(s) 27, 120
MlyI GAGTC 1 cut(s) 373
Mox20I TGGCCA 2 cut(s) 27, 120
MscI TGGCCA 2 cut(s) 27, 120
Msp20I TGGCCA 2 cut(s) 27, 120
MspA1I CMGCKG 2 cut(s) 488, 587
MspR9I CCNGG 6 cut(s) 258, 339, 411, 465, 498, 642
Mva1269I GAATGC 1 cut(s) 354
MvaI CCWGG 6 cut(s) 258, 339, 411, 465, 498, 642
MwoI GCNNNNNNNGC 7 cut(s) 8, 278, 398, 428, 593, 716, 725
NdeI CATATG 2 cut(s) 403, 751
NdeII GATC 2 cut(s) 136, 212
NlaIII CATG 1 cut(s) 146
NlaIV GGNNCC 4 cut(s) 99, 263, 607, 657
NmuCI GTSAC 1 cut(s) 450
PaeR7I CTCGAG 1 cut(s) 741
PaqCI CACCTGC 3 cut(s) 136, 397, 643
PctI GAATGC 1 cut(s) 354
PfeI GAWTC 2 cut(s) 224, 545
PflMI CCANNNNNTGG 4 cut(s) 344, 527, 617, 647
PfoI TCCNGGA 1 cut(s) 463
PkrI GCNGC 5 cut(s) 33, 157, 249, 589, 685
PleI GAGTC 1 cut(s) 373
PmaCI CACGTG 1 cut(s) 557
PmlI CACGTG 1 cut(s) 557
PpsI GAGTC 1 cut(s) 373
Ppu21I YACGTR 1 cut(s) 557
Psp6I CCWGG 6 cut(s) 256, 337, 409, 463, 496, 640
PspCI CACGTG 1 cut(s) 557
PspFI CCCAGC 1 cut(s) 181
PspGI CCWGG 6 cut(s) 256, 337, 409, 463, 496, 640
PspN4I GGNNCC 4 cut(s) 99, 263, 607, 657
PspPI GGNCC 3 cut(s) 262, 407, 605
PspXI VCTCGAGB 1 cut(s) 741
PstI CTGCAG 2 cut(s) 157, 688
PsuI RGATCY 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 488
SatI GCNGC 5 cut(s) 32, 156, 248, 588, 684
Sau3AI GATC 2 cut(s) 136, 212
Sau96I GGNCC 3 cut(s) 262, 407, 605
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 6 cut(s) 258, 339, 411, 465, 498, 642
SduI GDGCHC 4 cut(s) 424, 556, 562, 625
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 3 cut(s) 153, 582, 684
Sfr274I CTCGAG 1 cut(s) 741
SinI GGWCC 2 cut(s) 407, 605
SlaI CTCGAG 1 cut(s) 741
SmlI CTYRAG 3 cut(s) 72, 307, 741
SmoI CTYRAG 3 cut(s) 72, 307, 741
Sse9I AATT 1 cut(s) 19
SsiI CCGC 5 cut(s) 2, 32, 317, 587, 626
SspMI CTAG 2 cut(s) 12, 294
StyD4I CCNGG 6 cut(s) 256, 337, 409, 463, 496, 640
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 559
TaqI TCGA 1 cut(s) 742
TasI AATT 1 cut(s) 19
TauI GCSGC 2 cut(s) 34, 590
TfiI GAWTC 2 cut(s) 224, 545
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 1 cut(s) 450
TseI GCWGC 3 cut(s) 155, 247, 683
Tsp45I GTSAC 1 cut(s) 450
TspRI CASTG 1 cut(s) 283
Van91I CCANNNNNTGG 4 cut(s) 344, 527, 617, 647
VneI GTGCAC 2 cut(s) 552, 621
VpaK11BI GGWCC 2 cut(s) 407, 605
XagI CCTNNNNNAGG 2 cut(s) 39, 255
XhoI CTCGAG 1 cut(s) 741
XmiI GTMKAC 1 cut(s) 329
XspI CTAG 2 cut(s) 12, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.