Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016406

Physical Location & Seq

Genomic Coordinates Reverse (-)

7767296 .. 7768003

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1111300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTCTAACAACCAAGCAATTGGACAAGATGATCCAAATGAACAGCTAGAGAAGAAAATAAAGGGGAGAGAAACTTTACTTCGGGAACATGAGGCTCGTCTGAGTGTTCTTCGATCAAACGGCTTCCAACTTGGAAACTTCTACTTGGTGTTTCAGGGAGTTATTTTGACGGCAATTGCAAGTAGTACCAAAGTCTTCACATGCAATGACAGTTGGCTGCTCATCCTTCTTTGTGTATTAGCTGCATGCCCTAATTTGGCTGCATTGTATTTGATTGGACAGGAATATATTAGAACACTCTCCCAGCGAGATAAGTGCTTGGTTGATTGCGATAACTTGAATGCTGAGCGATCCAGGCTCAACAACGCAGGTCCACAACAAAATCCCGTTGCGAGAACACCACCACCCGGGCAAACTCCTACCACTGGCGGAACACCACCACGTGGGGAAACTCCAGCTCCTGGAACACCACCGCTACAAGTTCCCGCTACTCGTGGTGATGATGACTACTGGGGAAAGCTTAAACGTACAGTCTTCTTGTTTGGTTGTATGGCTTTTTTTTTGGGCGTTTCGGCCATCATGGTTTTGGCTTGTAGGAAGATTCTTTGCAGGGCAGTAGCCGATTGTAAGCTCCCTTCCAGTCTTAGTAAAAAATGCATCAGGCTTTGTGATGAGGGTTCCAAGTGTTTAACCATCTGCAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

25.73

Weight (kDa)

8.91

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016406)

Species	Orthologous Gene IDs
malus_domestica	MD15G1111300.v1.1 MD15G1112200.v1.1
prunus_persica	Prupe.1G469500_v2.0.a1 Prupe.1G469600_v2.0.a1 Prupe.1G469800_v2.0.a1 Prupe.1G470100_v2.0.a1 Prupe.1G470300_v2.0.a1 Prupe.1G470400_v2.0.a1 Prupe.1G470500_v2.0.a1 Prupe.1G470600_v2.0.a1
pyrus_communis	pycom15g10320
rosa_laevigata	RLG00000003048
rosa_roxburghii	Rroxscaffold_3G00248420
rosa_rugosa	Rorug05G0539700 Rorug05G0540800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	359
AccB7I	CCANNNNNTGG	2 cut(s)	443, 461
AciI	CCGC	3 cut(s)	429, 473, 486
AclWI	GGATC	2 cut(s)	26, 345
AcoI	YGGCCR	1 cut(s)	573
AcvI	CACGTG	1 cut(s)	443
AdeI	CACNNNGTG	1 cut(s)	443
AfaI	GTAC	2 cut(s)	187, 529
AfiI	CCNNNNNNNGG	5 cut(s)	256, 407, 425, 443, 461
AgsI	TTSAA	1 cut(s)	340
AjnI	CCWGG	2 cut(s)	353, 460
AluBI	AGCT	5 cut(s)	46, 242, 458, 520, 631
AluI	AGCT	5 cut(s)	46, 242, 458, 520, 631
AlwI	GGATC	2 cut(s)	26, 345
AlwNI	CAGNNNCTG	1 cut(s)	461
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	1 cut(s)	573
ApeKI	GCWGC	3 cut(s)	217, 242, 260
AspS9I	GGNCC	1 cut(s)	371
AsuC2I	CCSGG	2 cut(s)	408, 409
AsuHPI	GGTGA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	371
BarI	GAAGNNNNNNTAC	2 cut(s)	619, 651
BauI	CACGAG	1 cut(s)	492
BbrPI	CACGTG	1 cut(s)	443
BbsI	GAAGAC	2 cut(s)	187, 526
BbvI	GCAGC	3 cut(s)	204, 229, 247
BccI	CCATC	2 cut(s)	584, 701
BceAI	ACGGC	2 cut(s)	136, 186
BcgI	CGANNNNNNTGC	2 cut(s)	297, 331
BciT130I	CCWGG	2 cut(s)	355, 462
BcnI	CCSGG	2 cut(s)	408, 409
BfaI	CTAG	2 cut(s)	47, 706
BfmI	CTRYAG	1 cut(s)	697
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	3 cut(s)	218, 243, 261
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	3 cut(s)	219, 244, 262
Bme1390I	CCNGG	4 cut(s)	355, 408, 409, 462
Bme18I	GGWCC	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	679
BmrFI	CCNGG	4 cut(s)	355, 408, 409, 462
BmrI	ACTGGG	1 cut(s)	520
BmsI	GCATC	1 cut(s)	666
BmuI	ACTGGG	1 cut(s)	520
BpiI	GAAGAC	2 cut(s)	187, 526
BpmI	CTGGAG	1 cut(s)	438
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuMI	CCSGG	2 cut(s)	408, 409
BsaAI	YACGTR	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	407
BsaXI	ACNNNNNCTCC	2 cut(s)	442, 472
Bsc4I	CCNNNNNNNGG	5 cut(s)	256, 407, 425, 443, 461
Bse1I	ACTGG	3 cut(s)	430, 515, 639
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	2 cut(s)	355, 462
BseDI	CCNNGG	1 cut(s)	407
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	5 cut(s)	256, 407, 425, 443, 461
BseMI	GCAATG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	92, 336
BseNI	ACTGG	3 cut(s)	430, 515, 639
BseXI	GCAGC	3 cut(s)	204, 229, 247
BseYI	CCCAGC	1 cut(s)	303
BshFI	GGCC	1 cut(s)	575
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	408
BslI	CCNNNNNNNGG	5 cut(s)	256, 407, 425, 443, 461
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	575
BsoBI	CYCGRG	1 cut(s)	407
Bsp143I	GATC	3 cut(s)	31, 113, 350
Bsp1720I	GCTNAGC	1 cut(s)	345
BspACI	CCGC	3 cut(s)	429, 473, 486
BspANI	GGCC	1 cut(s)	575
BspCNI	CTCAG	2 cut(s)	93, 337
BspLI	GGNNCC	1 cut(s)	679
BspMAI	CTGCAG	1 cut(s)	701
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	2 cut(s)	26, 345
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	3 cut(s)	430, 515, 639
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	3 cut(s)	31, 113, 350
BssSI	CACGAG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	355, 462
Bst4CI	ACNGT	2 cut(s)	212, 532
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	3 cut(s)	101, 345, 644
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	3 cut(s)	34, 116, 353
BstMBI	GATC	3 cut(s)	31, 113, 350
BstMWI	GCNNNNNNNGC	1 cut(s)	355
BstNI	CCWGG	2 cut(s)	355, 462
BstNSI	RCATGY	2 cut(s)	204, 249
BstSCI	CCNGG	4 cut(s)	353, 406, 407, 460
BstSFI	CTRYAG	1 cut(s)	697
BstV1I	GCAGC	3 cut(s)	204, 229, 247
BstV2I	GAAGAC	2 cut(s)	187, 526
BstXI	CCANNNNNNTGG	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	575
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	423
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	247
CaiI	CAGNNNCTG	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	371
Cfr9I	CCCGGG	1 cut(s)	407
Csp6I	GTAC	2 cut(s)	186, 528
CviAII	CATG	4 cut(s)	89, 201, 246, 580
CviQI	GTAC	2 cut(s)	186, 528
DdeI	CTNAG	3 cut(s)	101, 345, 644
DpnI	GATC	3 cut(s)	33, 115, 352
DpnII	GATC	3 cut(s)	31, 113, 350
DraIII	CACNNNGTG	1 cut(s)	443
EaeI	YGGCCR	1 cut(s)	573
EciI	GGCGGA	1 cut(s)	444
Eco47I	GGWCC	1 cut(s)	371
Eco72I	CACGTG	1 cut(s)	443
Eco88I	CYCGRG	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	353, 460
EcoT22I	ATGCAT	1 cut(s)	659
FaeI	CATG	4 cut(s)	92, 204, 249, 583
FaiI	YATR	6 cut(s)	90, 202, 247, 288, 551, 581
FatI	CATG	4 cut(s)	88, 200, 245, 579
FauI	CCCGC	1 cut(s)	493
Fnu4HI	GCNGC	3 cut(s)	218, 243, 261
FokI	GGATG	1 cut(s)	209
Fsp4HI	GCNGC	3 cut(s)	218, 243, 261
FspBI	CTAG	2 cut(s)	47, 706
GluI	GCNGC	3 cut(s)	218, 243, 261
GsaI	CCCAGC	1 cut(s)	307
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	575
HapII	CCGG	1 cut(s)	408
Hin1II	CATG	4 cut(s)	92, 204, 249, 583
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	1 cut(s)	601
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	236, 645
HpyCH4III	ACNGT	2 cut(s)	212, 532
HpyCH4IV	ACGT	2 cut(s)	442, 526
HpyCH4V	TGCA	7 cut(s)	179, 204, 245, 263, 609, 657, 699
HpyF10VI	GCNNNNNNNGC	1 cut(s)	355
HpyF3I	CTNAG	3 cut(s)	101, 345, 644
HpySE526I	ACGT	2 cut(s)	442, 526
Hsp92II	CATG	4 cut(s)	92, 204, 249, 583
Kzo9I	GATC	3 cut(s)	31, 113, 350
LmnI	GCTCC	2 cut(s)	463, 636
Lsp1109I	GCAGC	3 cut(s)	204, 229, 247
LweI	GCATC	1 cut(s)	666
MaeI	CTAG	2 cut(s)	47, 706
MaeII	ACGT	2 cut(s)	442, 526
MalI	GATC	3 cut(s)	33, 115, 352
MboI	GATC	3 cut(s)	31, 113, 350
MboII	GAAGA	5 cut(s)	64, 101, 187, 526, 610
MfeI	CAATTG	2 cut(s)	18, 174
MluCI	AATT	3 cut(s)	18, 174, 253
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	2 cut(s)	85, 667
Mph1103I	ATGCAT	1 cut(s)	659
MseI	TTAA	2 cut(s)	522, 689
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	4 cut(s)	355, 408, 409, 462
MunI	CAATTG	2 cut(s)	18, 174
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	2 cut(s)	355, 462
MwoI	GCNNNNNNNGC	1 cut(s)	355
NciI	CCSGG	2 cut(s)	408, 409
NdeII	GATC	3 cut(s)	31, 113, 350
NlaIII	CATG	4 cut(s)	92, 204, 249, 583
NlaIV	GGNNCC	1 cut(s)	679
NsiI	ATGCAT	1 cut(s)	659
NspI	RCATGY	2 cut(s)	204, 249
PaeI	GCATGC	1 cut(s)	249
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	601
PflMI	CCANNNNNTGG	2 cut(s)	443, 461
PfoI	TCCNGGA	1 cut(s)	460
PkrI	GCNGC	3 cut(s)	219, 244, 262
PmaCI	CACGTG	1 cut(s)	443
PmlI	CACGTG	1 cut(s)	443
Ppu21I	YACGTR	1 cut(s)	443
Psp6I	CCWGG	2 cut(s)	353, 460
PspCI	CACGTG	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	303
PspGI	CCWGG	2 cut(s)	353, 460
PspN4I	GGNNCC	1 cut(s)	679
PspPI	GGNCC	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	701
PstNI	CAGNNNCTG	1 cut(s)	461
RsaI	GTAC	2 cut(s)	187, 529
RsaNI	GTAC	2 cut(s)	186, 528
SaqAI	TTAA	2 cut(s)	522, 689
SatI	GCNGC	3 cut(s)	218, 243, 261
Sau3AI	GATC	3 cut(s)	31, 113, 350
Sau96I	GGNCC	1 cut(s)	371
ScrFI	CCNGG	4 cut(s)	355, 408, 409, 462
SetI	ASST	8 cut(s)	48, 244, 373, 445, 460, 522, 529, 633
SfaNI	GCATC	1 cut(s)	666
SfcI	CTRYAG	1 cut(s)	697
SinI	GGWCC	1 cut(s)	371
SmaI	CCCGGG	1 cut(s)	409
SphI	GCATGC	1 cut(s)	249
Sse9I	AATT	3 cut(s)	18, 174, 253
SsiI	CCGC	3 cut(s)	429, 473, 486
SspMI	CTAG	2 cut(s)	47, 706
StyD4I	CCNGG	4 cut(s)	353, 406, 407, 460
TaaI	ACNGT	2 cut(s)	212, 532
TaiI	ACGT	2 cut(s)	445, 529
TaqI	TCGA	1 cut(s)	112
TasI	AATT	3 cut(s)	18, 174, 253
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	2 cut(s)	522, 689
Tru9I	TTAA	2 cut(s)	522, 689
TscAI	CASTG	1 cut(s)	430
TseI	GCWGC	3 cut(s)	217, 242, 260
TspDTI	ATGAA	1 cut(s)	54
TspMI	CCCGGG	1 cut(s)	407
TspRI	CASTG	1 cut(s)	430
Van91I	CCANNNNNTGG	2 cut(s)	443, 461
VpaK11BI	GGWCC	1 cut(s)	371
XceI	RCATGY	2 cut(s)	204, 249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XmaI	CCCGGG	1 cut(s)	407
XspI	CTAG	2 cut(s)	47, 706
Zsp2I	ATGCAT	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.