Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016406

Physical Location & Seq

Genomic Coordinates Reverse (-)

41731479 .. 41732066

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTGACAACGAAAAGATTCAAAAGGAAAAGCTAAAGAAGAAACTAAAGGAGTTAAAAACTATAATGGCGGAGCAGGATGGTCGCCTCAATCATCTGCAATCAAGTGGGTTTCAACTTGCGAACTTCTACTTCGTCTTTCAGGGAGTTATTTTGACGGTAATTTCCAACGGTTCCTCAGCTCTCCGATGCTCGAACTGTTGGATCCCTTTTGCCCTTTCTCTATTAGCGGCCATACTTAACTTGGTGTCATTTGTTAAGATTGGACAGGAATATCTTGAAACCATCAAACAGCGAGACAATTCGTTGATGAAGATCGATAGGAAGAATGCCGATTTAAAGAAATTTAAAAACAAGCTTGGTCCACCTGATGTTCCGCCTTATGTTGATGCTTATAAAAAGTTCAAGCGTAAATTCTCCTTTGTTATTTGCGTGCTTCTATTTCTGGTCTTTTCCAGCATCATGATTGCCGCTTGCTGGACTGTTATTTGCCATCCAGCAGCTAAATCTAAGCACACACCGACCGTTGATGGTAAGTGCATTAGGCTTTGTGATAGTTCCAATTGTATAAGGATCTGCAGCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

22.07

Weight (kDa)

9.48

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016406)

Species	Orthologous Gene IDs
malus_domestica	MD15G1111300.v1.1 MD15G1112200.v1.1
prunus_persica	Prupe.1G469500_v2.0.a1 Prupe.1G469600_v2.0.a1 Prupe.1G469800_v2.0.a1 Prupe.1G470100_v2.0.a1 Prupe.1G470300_v2.0.a1 Prupe.1G470400_v2.0.a1 Prupe.1G470500_v2.0.a1 Prupe.1G470600_v2.0.a1
pyrus_communis	pycom15g10320
rosa_laevigata	RLG00000003048
rosa_roxburghii	Rroxscaffold_3G00248420
rosa_rugosa	Rorug05G0539700 Rorug05G0540800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AciI	CCGC	4 cut(s)	71, 230, 377, 471
AclWI	GGATC	3 cut(s)	199, 212, 581
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	2 cut(s)	344, 413
AfiI	CCNNNNNNNGG	1 cut(s)	477
AgsI	TTSAA	4 cut(s)	23, 116, 281, 406
AluBI	AGCT	4 cut(s)	34, 182, 358, 503
AluI	AGCT	4 cut(s)	34, 182, 358, 503
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	3 cut(s)	199, 212, 581
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	2 cut(s)	500, 579
ApoI	RAATTY	2 cut(s)	344, 413
Asp700I	GAANNNNTTC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	512
BccI	CCATC	4 cut(s)	74, 293, 501, 524
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BcoDI	GTCTC	1 cut(s)	291
BfmI	CTRYAG	1 cut(s)	577
BisI	GCNGC	4 cut(s)	231, 471, 501, 580
BlsI	GCNGC	4 cut(s)	232, 472, 502, 581
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	175, 206
BmsI	GCATC	3 cut(s)	179, 379, 468
Bpu10I	CCTNAGC	1 cut(s)	178
Bsa29I	ATCGAT	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	314
BseCI	ATCGAT	1 cut(s)	318
BseGI	GGATG	2 cut(s)	85, 493
BseJI	GATNNNNATC	1 cut(s)	314
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	512
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	1 cut(s)	233
BshVI	ATCGAT	1 cut(s)	318
BsiEI	CGRYCG	1 cut(s)	525
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	204, 315, 573
BspACI	CCGC	4 cut(s)	71, 230, 377, 471
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	1 cut(s)	191
BspDI	ATCGAT	1 cut(s)	318
BspHI	TCATGA	1 cut(s)	462
BspLI	GGNNCC	2 cut(s)	175, 206
BspMAI	CTGCAG	1 cut(s)	581
BspPI	GGATC	3 cut(s)	199, 212, 581
BssMI	GATC	3 cut(s)	204, 315, 573
Bst4CI	ACNGT	5 cut(s)	160, 173, 200, 484, 526
BstC8I	GCNNGC	2 cut(s)	434, 475
BstDEI	CTNAG	2 cut(s)	178, 510
BstF5I	GGATG	2 cut(s)	85, 493
BstKTI	GATC	3 cut(s)	207, 318, 576
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	3 cut(s)	204, 315, 573
BstMCI	CGRYCG	1 cut(s)	525
BstSFI	CTRYAG	1 cut(s)	577
BstV1I	GCAGC	1 cut(s)	512
BstX2I	RGATCY	2 cut(s)	204, 573
BstYI	RGATCY	2 cut(s)	204, 573
Bsu15I	ATCGAT	1 cut(s)	318
BsuRI	GGCC	1 cut(s)	233
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	2 cut(s)	85, 493
Cac8I	GCNNGC	2 cut(s)	434, 475
CciI	TCATGA	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	362
ClaI	ATCGAT	1 cut(s)	318
CviAII	CATG	1 cut(s)	463
CviJI	RGCY	7 cut(s)	5, 34, 182, 233, 358, 503, 547
CviKI_1	RGCY	7 cut(s)	5, 34, 182, 233, 358, 503, 547
DdeI	CTNAG	2 cut(s)	178, 510
DpnI	GATC	3 cut(s)	206, 317, 575
DpnII	GATC	3 cut(s)	204, 315, 573
DraI	TTTAAA	2 cut(s)	339, 349
EaeI	YGGCCR	1 cut(s)	231
EciI	GGCGGA	2 cut(s)	86, 366
Eco47I	GGWCC	1 cut(s)	362
FaeI	CATG	1 cut(s)	466
FaiI	YATR	6 cut(s)	65, 236, 384, 396, 464, 569
FatI	CATG	1 cut(s)	462
Fnu4HI	GCNGC	4 cut(s)	231, 471, 501, 580
FokI	GGATG	2 cut(s)	92, 480
Fsp4HI	GCNGC	4 cut(s)	231, 471, 501, 580
GluI	GCNGC	4 cut(s)	231, 471, 501, 580
HaeIII	GGCC	1 cut(s)	233
Hin1II	CATG	1 cut(s)	466
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	365
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	2 cut(s)	278, 463
Hpy8I	GTNNAC	1 cut(s)	365
HpyCH4III	ACNGT	5 cut(s)	160, 173, 200, 484, 526
HpyCH4V	TGCA	3 cut(s)	100, 540, 579
HpyF3I	CTNAG	2 cut(s)	178, 510
Hsp92II	CATG	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	204, 315, 573
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	8 cut(s)	62, 128, 254, 381, 431, 463, 469, 510
Lsp1109I	GCAGC	1 cut(s)	512
LweI	GCATC	3 cut(s)	179, 379, 468
MalI	GATC	3 cut(s)	206, 317, 575
MboI	GATC	3 cut(s)	204, 315, 573
MboII	GAAGA	3 cut(s)	52, 325, 337
MfeI	CAATTG	1 cut(s)	562
MflI	RGATCY	2 cut(s)	204, 573
MluCI	AATT	5 cut(s)	162, 301, 344, 413, 562
MmeI	TCCRAC	2 cut(s)	182, 192
MnlI	CCTC	2 cut(s)	98, 187
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	5 cut(s)	56, 240, 258, 338, 348
MunI	CAATTG	1 cut(s)	562
Mva1269I	GAATGC	1 cut(s)	334
NdeII	GATC	3 cut(s)	204, 315, 573
NlaIII	CATG	1 cut(s)	466
NlaIV	GGNNCC	2 cut(s)	175, 206
PagI	TCATGA	1 cut(s)	462
PctI	GAATGC	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	4 cut(s)	232, 472, 502, 581
PsiI	TTATAA	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	175, 206
PspPI	GGNCC	1 cut(s)	362
PstI	CTGCAG	1 cut(s)	581
PsuI	RGATCY	2 cut(s)	204, 573
SaqAI	TTAA	5 cut(s)	56, 240, 258, 338, 348
SatI	GCNGC	4 cut(s)	231, 471, 501, 580
Sau3AI	GATC	3 cut(s)	204, 315, 573
Sau96I	GGNCC	1 cut(s)	362
SetI	ASST	5 cut(s)	36, 184, 360, 370, 505
SfaNI	GCATC	3 cut(s)	179, 379, 468
SfcI	CTRYAG	1 cut(s)	577
SinI	GGWCC	1 cut(s)	362
Sse9I	AATT	5 cut(s)	162, 301, 344, 413, 562
SsiI	CCGC	4 cut(s)	71, 230, 377, 471
TaaI	ACNGT	5 cut(s)	160, 173, 200, 484, 526
TaqI	TCGA	2 cut(s)	194, 318
TasI	AATT	5 cut(s)	162, 301, 344, 413, 562
TauI	GCSGC	2 cut(s)	233, 473
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	5 cut(s)	56, 240, 258, 338, 348
Tru9I	TTAA	5 cut(s)	56, 240, 258, 338, 348
TseI	GCWGC	2 cut(s)	500, 579
TspDTI	ATGAA	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	2 cut(s)	344, 413
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.