Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0016406

Physical Location & Seq

Genomic Coordinates Reverse (-)

7870966 .. 7871688

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1112200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCTAACAACCAAACAAATGGACAAGGTGATTCAATTGAACAGCTCAGGAAGCAAATGGAAGATTTTCAAACTGTAATTCGGGAACATGATACTCGTCTCAATCATCTTCAATCAAGCGCCTTCCAACTTGGAAACTTCTACCTGGTCTTTCAGGGAGTCATTTTGGGGGCAATTGTTAATAGTGCCAAGGTCTTCACATGCAGTGACAGTTGGCTGCTCATCTCCCTTTCTTTATTACCTGCCTGCCCTAATTTGGTTGCATTGTATTTGATTGGACGTGAATATATTAATACAATCTCCCATCGAGATGACTGCTGGAATAGTTACGATGAATTGAATGCTGAGCTAGTCCGCTTACAGTTACAGAAACCGACCACAAGTTCAACCTTCTCCCCCTCCGCCACCCAGGGGCAACCTTCTCCCGCTTCGGCACCCGGGCAACCTTCTCACGCTTCGGCACTCGCTGGAATTCATGTTGATGATTCTTCACCCGCTGGAACTCATGTTGATGATTCGTCACCCGCTGGAACTCATGTTGATGATTCGTCACCCGCTGGAACTCATGTTGATGATTCGTCACCCGCTGGAACTCATGTTGATGGTTGGAGAAAGCTCAAACATATGTTTTTATTGTTTGTTTGTTTGGCTTTTTTTTTGGGCGTTTCCGCCATCATGGTTGTGGCTTGTAGGAAGATTCTTTGCAGGACAAGGCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

26.11

Weight (kDa)

5.95

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016406)

Species	Orthologous Gene IDs
malus_domestica	MD15G1111300.v1.1 MD15G1112200.v1.1
prunus_persica	Prupe.1G469500_v2.0.a1 Prupe.1G469600_v2.0.a1 Prupe.1G469800_v2.0.a1 Prupe.1G470100_v2.0.a1 Prupe.1G470300_v2.0.a1 Prupe.1G470400_v2.0.a1 Prupe.1G470500_v2.0.a1 Prupe.1G470600_v2.0.a1
pyrus_communis	pycom15g10320
rosa_laevigata	RLG00000003048
rosa_roxburghii	Rroxscaffold_3G00248420
rosa_rugosa	Rorug05G0539700 Rorug05G0540800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	250
AccB1I	GGYRCC	1 cut(s)	433
AciI	CCGC	8 cut(s)	355, 402, 426, 495, 525, 555, 585, 669
AcsI	RAATTY	1 cut(s)	471
AfiI	CCNNNNNNNGG	2 cut(s)	256, 411
AgsI	TTSAA	6 cut(s)	36, 41, 71, 113, 340, 387
AjiI	CACGTC	1 cut(s)	281
AjnI	CCWGG	2 cut(s)	144, 408
AluBI	AGCT	3 cut(s)	46, 349, 616
AluI	AGCT	3 cut(s)	46, 349, 616
Alw26I	GTCTC	1 cut(s)	104
Ama87I	CYCGRG	1 cut(s)	437
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	1 cut(s)	471
ArsI	GACNNNNNNTTYG	1 cut(s)	700
AseI	ATTAAT	1 cut(s)	291
Asp700I	GAANNNNTTC	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	122
AsuC2I	CCSGG	2 cut(s)	438, 439
AsuHPI	GGTGA	5 cut(s)	41, 483, 513, 543, 573
AvaI	CYCGRG	1 cut(s)	437
BanI	GGYRCC	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	187
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	3 cut(s)	312, 596, 680
BcgI	CGANNNNNNTGC	2 cut(s)	297, 331
BciT130I	CCWGG	2 cut(s)	146, 410
BcnI	CCSGG	2 cut(s)	438, 439
BcoDI	GTCTC	1 cut(s)	104
BfaI	CTAG	1 cut(s)	350
BfoI	RGCGCY	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	218
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	219
Bme1390I	CCNGG	4 cut(s)	146, 410, 438, 439
BmeT110I	CYCGRG	1 cut(s)	437
BmgBI	CACGTC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	4 cut(s)	146, 410, 438, 439
BpiI	GAAGAC	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuMI	CCSGG	2 cut(s)	438, 439
BsaJI	CCNNGG	4 cut(s)	189, 408, 409, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 411
BseBI	CCWGG	2 cut(s)	146, 410
BseDI	CCNNGG	4 cut(s)	189, 408, 409, 437
BseLI	CCNNNNNNNGG	2 cut(s)	256, 411
BseMII	CTCAG	2 cut(s)	61, 336
BseXI	GCAGC	1 cut(s)	204
BshNI	GGYRCC	1 cut(s)	433
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	256, 411
BsmAI	GTCTC	1 cut(s)	104
BsmBI	CGTCTC	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	437
Bsp1720I	GCTNAGC	1 cut(s)	345
BspACI	CCGC	8 cut(s)	355, 402, 426, 495, 525, 555, 585, 669
BspCNI	CTCAG	2 cut(s)	60, 337
BspLI	GGNNCC	1 cut(s)	435
BspMI	ACCTGC	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	433
BssECI	CCNNGG	4 cut(s)	189, 408, 409, 437
BssT1I	CCWWGG	1 cut(s)	189
Bst2UI	CCWGG	2 cut(s)	146, 410
Bst4CI	ACNGT	3 cut(s)	76, 212, 363
BstC8I	GCNNGC	1 cut(s)	247
BstDEI	CTNAG	2 cut(s)	47, 345
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstMAI	GTCTC	1 cut(s)	104
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	2 cut(s)	146, 410
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	4 cut(s)	144, 408, 436, 437
BstV1I	GCAGC	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	187
BstXI	CCANNNNNNTGG	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	281
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	211
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	247
CfoI	GCGC	1 cut(s)	122
Cfr9I	CCCGGG	1 cut(s)	437
CsiI	ACCWGGT	1 cut(s)	144
CviAII	CATG	8 cut(s)	89, 201, 476, 506, 536, 566, 596, 676
CviJI	RGCY	6 cut(s)	46, 217, 349, 616, 650, 686
CviKI_1	RGCY	6 cut(s)	46, 217, 349, 616, 650, 686
DdeI	CTNAG	2 cut(s)	47, 345
EciI	GGCGGA	2 cut(s)	391, 658
Eco130I	CCWWGG	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	144, 408
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	8 cut(s)	92, 204, 479, 509, 539, 569, 599, 679
FatI	CATG	8 cut(s)	88, 200, 475, 505, 535, 565, 595, 675
FauI	CCCGC	5 cut(s)	433, 502, 532, 562, 592
FauNDI	CATATG	1 cut(s)	624
Fnu4HI	GCNGC	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	1 cut(s)	218
HaeII	RGCGCY	1 cut(s)	123
HapII	CCGG	1 cut(s)	438
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	8 cut(s)	92, 204, 479, 509, 539, 569, 599, 679
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	7 cut(s)	32, 159, 485, 515, 545, 575, 697
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	5 cut(s)	41, 483, 513, 543, 573
Hpy188III	TCNNGA	3 cut(s)	49, 83, 308
HpyAV	CCTTC	4 cut(s)	133, 400, 429, 456
HpyCH4III	ACNGT	3 cut(s)	76, 212, 363
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	3 cut(s)	204, 263, 705
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	2 cut(s)	47, 345
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	8 cut(s)	92, 204, 479, 509, 539, 569, 599, 679
HspAI	GCGC	1 cut(s)	120
Lsp1109I	GCAGC	1 cut(s)	204
MabI	ACCWGGT	1 cut(s)	144
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	6 cut(s)	206, 326, 363, 519, 549, 579
MboII	GAAGA	5 cut(s)	74, 101, 187, 480, 706
MfeI	CAATTG	2 cut(s)	36, 174
MluCI	AATT	6 cut(s)	36, 78, 174, 253, 335, 471
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	2 cut(s)	151, 587
MnlI	CCTC	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	2 cut(s)	180, 291
MslI	CAYNNNNRTG	7 cut(s)	309, 480, 510, 540, 570, 600, 680
MspA1I	CMGCKG	4 cut(s)	497, 527, 557, 587
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	4 cut(s)	146, 410, 438, 439
MunI	CAATTG	2 cut(s)	36, 174
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	2 cut(s)	146, 410
MwoI	GCNNNNNNNGC	1 cut(s)	52
NciI	CCSGG	2 cut(s)	438, 439
NdeI	CATATG	1 cut(s)	624
NlaIII	CATG	8 cut(s)	92, 204, 479, 509, 539, 569, 599, 679
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	4 cut(s)	206, 519, 549, 579
NspI	RCATGY	1 cut(s)	204
PasI	CCCWGGG	1 cut(s)	409
PctI	GAATGC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	6 cut(s)	32, 485, 515, 545, 575, 697
PkrI	GCNGC	1 cut(s)	219
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PshBI	ATTAAT	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	144, 408
PspGI	CCWGG	2 cut(s)	144, 408
PspN4I	GGNNCC	1 cut(s)	435
RseI	CAYNNNNRTG	7 cut(s)	309, 480, 510, 540, 570, 600, 680
SaqAI	TTAA	2 cut(s)	180, 291
SatI	GCNGC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	4 cut(s)	146, 410, 438, 439
SexAI	ACCWGGT	1 cut(s)	144
SmaI	CCCGGG	1 cut(s)	439
SmiMI	CAYNNNNRTG	7 cut(s)	309, 480, 510, 540, 570, 600, 680
Sse9I	AATT	6 cut(s)	36, 78, 174, 253, 335, 471
SsiI	CCGC	8 cut(s)	355, 402, 426, 495, 525, 555, 585, 669
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	4 cut(s)	144, 408, 436, 437
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	3 cut(s)	76, 212, 363
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	307
TasI	AATT	6 cut(s)	36, 78, 174, 253, 335, 471
TfiI	GAWTC	6 cut(s)	32, 485, 515, 545, 575, 697
Tru1I	TTAA	2 cut(s)	180, 291
Tru9I	TTAA	2 cut(s)	180, 291
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	4 cut(s)	206, 519, 549, 579
TseI	GCWGC	1 cut(s)	217
Tsp45I	GTSAC	4 cut(s)	206, 519, 549, 579
TspDTI	ATGAA	2 cut(s)	348, 464
TspMI	CCCGGG	1 cut(s)	437
TspRI	CASTG	1 cut(s)	211
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	1 cut(s)	471
XceI	RCATGY	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XmaI	CCCGGG	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.