Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016406

Physical Location & Seq

Genomic Coordinates Reverse (-)

39180283 .. 39181682

Gene Structure 1400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G470500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTTAACCATCCATGTCCACCCAATGGTGACAATGAAAAAAAAGAAATCATGGAGAAAAGAAAACAGCAGCTACAAACTACAGTTGACAAGCAGATCGATCGTGTAAATGAACTTCAAACGAGTGCCTTCAACCTTGCAAACTACTACTTCGTCTTTCAAGGAATTATTTTAGGGGTTATCGTCAGTGGTACCAGAGCGCTGCGATGCTCAGATCGCTGGTTCCTTTTCAGCCTCTCTCTAATAGCAGCCATACTCAACTTGGTTTCATTGCTTGTAATTGGAGGCAATTATAAAAGAAGCGTCATGCAGAGAAACCGAACCAAGAGTGAGCGCAATAAATTGGAAAGTGATCTGGAGAAGCTAGAAACTTCACATTCAGATCATGGGCTCAAAAATAACATATTATCGTACTGGAGTTCAATAAAAATAGAAGCTTCAGGGCAGGTTACTTGTCAAGATCCTACAAGTGTAGAAATTAAGGATGAACCGGAACAAAGGCAGGTTGTGCCTGTTGATAATTACCAAAAAAAGCTGCATGATTTCTACTTTCTACTTTGCATGGGTCTGTTTATATGCTTTTCCGTCGTCGTGATTACCCCACTGTATTACGAGAGAGGACAGGTTCCGAAAACTTTCTTCCTTAATGGACCTGTATCCTCTGCCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

25.49

Weight (kDa)

8.22

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016406)

Species	Orthologous Gene IDs
malus_domestica	MD15G1111300.v1.1 MD15G1112200.v1.1
prunus_persica	Prupe.1G469500_v2.0.a1 Prupe.1G469600_v2.0.a1 Prupe.1G469800_v2.0.a1 Prupe.1G470100_v2.0.a1 Prupe.1G470300_v2.0.a1 Prupe.1G470400_v2.0.a1 Prupe.1G470500_v2.0.a1 Prupe.1G470600_v2.0.a1
pyrus_communis	pycom15g10320
rosa_laevigata	RLG00000003048
rosa_roxburghii	Rroxscaffold_3G00248420
rosa_rugosa	Rorug05G0539700 Rorug05G0540800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
Acc36I	ACCTGC	2 cut(s)	436, 493
Acc65I	GGTACC	1 cut(s)	191
AccB1I	GGYRCC	1 cut(s)	191
AccB7I	CCANNNNNTGG	1 cut(s)	26
AclWI	GGATC	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	2 cut(s)	193, 413
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	4 cut(s)	119, 133, 161, 423
AluBI	AGCT	4 cut(s)	73, 364, 437, 535
AluI	AGCT	4 cut(s)	73, 364, 437, 535
AlwI	GGATC	1 cut(s)	455
Aor51HI	AGCGCT	1 cut(s)	201
ApeKI	GCWGC	4 cut(s)	70, 202, 248, 535
Asp700I	GAANNNNTTC	1 cut(s)	635
Asp718I	GGTACC	1 cut(s)	191
AspLEI	GCGC	2 cut(s)	202, 336
AspS9I	GGNCC	1 cut(s)	650
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	191
BanII	GRGCYC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	99, 131
BbvI	GCAGC	4 cut(s)	82, 189, 260, 522
BccI	CCATC	1 cut(s)	18
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciVI	GTATCC	1 cut(s)	667
BfaI	CTAG	1 cut(s)	365
BfmI	CTRYAG	1 cut(s)	81
BfoI	RGCGCY	1 cut(s)	203
BfuAI	ACCTGC	2 cut(s)	436, 493
BfuI	GTATCC	1 cut(s)	667
BisI	GCNGC	4 cut(s)	71, 203, 249, 536
BlsI	GCNGC	4 cut(s)	72, 204, 250, 537
Bme18I	GGWCC	1 cut(s)	650
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	3 cut(s)	193, 224, 627
BmsI	GCATC	1 cut(s)	197
BpmI	CTGGAG	2 cut(s)	377, 436
Bsa29I	ATCGAT	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	419
Bse3DI	GCAATG	1 cut(s)	269
BseCI	ATCGAT	1 cut(s)	99
BseGI	GGATG	2 cut(s)	10, 490
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	419
BseXI	GCAGC	4 cut(s)	82, 189, 260, 522
Bsh1285I	CGRYCG	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	6 cut(s)	96, 100, 214, 352, 382, 460
BspCNI	CTCAG	1 cut(s)	224
BspDI	ATCGAT	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	193, 224, 627
BspMI	ACCTGC	2 cut(s)	436, 493
BspPI	GGATC	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	419
BssMI	GATC	6 cut(s)	96, 100, 214, 352, 382, 460
Bst4CI	ACNGT	2 cut(s)	85, 606
BstAPI	GCANNNNNTGC	1 cut(s)	508
BstDEI	CTNAG	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	10, 490
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	202, 336
BstKTI	GATC	6 cut(s)	99, 103, 217, 355, 385, 463
BstMBI	GATC	6 cut(s)	96, 100, 214, 352, 382, 460
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	216, 508
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	4 cut(s)	82, 189, 260, 522
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
Bsu15I	ATCGAT	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	667
BsuTUI	ATCGAT	1 cut(s)	99
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	10, 490
BtsIMutI	CAGTG	2 cut(s)	193, 602
BveI	ACCTGC	2 cut(s)	436, 493
CfoI	GCGC	2 cut(s)	202, 336
Cfr13I	GGNCC	1 cut(s)	650
ClaI	ATCGAT	1 cut(s)	99
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	192, 412
CviAII	CATG	6 cut(s)	15, 52, 307, 386, 539, 562
CviJI	RGCY	7 cut(s)	73, 234, 251, 364, 391, 437, 535
CviKI_1	RGCY	7 cut(s)	73, 234, 251, 364, 391, 437, 535
CviQI	GTAC	2 cut(s)	192, 412
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	6 cut(s)	98, 102, 216, 354, 384, 462
DpnII	GATC	6 cut(s)	96, 100, 214, 352, 382, 460
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	650
Eco47III	AGCGCT	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	423
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	6 cut(s)	18, 55, 310, 389, 542, 565
FatI	CATG	6 cut(s)	14, 51, 306, 385, 538, 561
Fnu4HI	GCNGC	4 cut(s)	71, 203, 249, 536
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	4 cut(s)	71, 203, 249, 536
FspBI	CTAG	1 cut(s)	365
GlaI	GCGC	2 cut(s)	201, 335
GluI	GCNGC	4 cut(s)	71, 203, 249, 536
GsuI	CTGGAG	2 cut(s)	377, 436
HaeII	RGCGCY	1 cut(s)	203
HapII	CCGG	1 cut(s)	491
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	2 cut(s)	202, 336
Hin1II	CATG	6 cut(s)	18, 55, 310, 389, 542, 565
Hin6I	GCGC	2 cut(s)	200, 334
HinP1I	GCGC	2 cut(s)	200, 334
HincII	GTYRAC	2 cut(s)	7, 88
HindII	GTYRAC	2 cut(s)	7, 88
HindIII	AAGCTT	1 cut(s)	435
HpaI	GTTAAC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	491
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	3 cut(s)	7, 20, 88
Hpy188I	TCNGA	3 cut(s)	214, 382, 630
Hpy188III	TCNNGA	3 cut(s)	356, 458, 592
Hpy8I	GTNNAC	3 cut(s)	7, 20, 88
Hpy99I	CGWCG	2 cut(s)	590, 593
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	2 cut(s)	85, 606
HpyCH4V	TGCA	4 cut(s)	140, 310, 538, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	216, 508
HpyF3I	CTNAG	1 cut(s)	211
Hsp92II	CATG	6 cut(s)	18, 55, 310, 389, 542, 565
HspAI	GCGC	2 cut(s)	200, 334
KpnI	GGTACC	1 cut(s)	195
KspAI	GTTAAC	1 cut(s)	7
Kzo9I	GATC	6 cut(s)	96, 100, 214, 352, 382, 460
Lsp1109I	GCAGC	4 cut(s)	82, 189, 260, 522
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	2 cut(s)	29, 448
MalI	GATC	6 cut(s)	98, 102, 216, 354, 384, 462
MboI	GATC	6 cut(s)	96, 100, 214, 352, 382, 460
MboII	GAAGA	1 cut(s)	631
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	6 cut(s)	165, 279, 289, 341, 477, 520
MnlI	CCTC	4 cut(s)	245, 278, 611, 670
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	3 cut(s)	6, 480, 645
MspI	CCGG	1 cut(s)	491
MwoI	GCNNNNNNNGC	2 cut(s)	216, 508
NdeII	GATC	6 cut(s)	96, 100, 214, 352, 382, 460
NlaIII	CATG	6 cut(s)	18, 55, 310, 389, 542, 565
NlaIV	GGNNCC	3 cut(s)	193, 224, 627
NmuCI	GTSAC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	635
PflMI	CCANNNNNTGG	1 cut(s)	26
PkrI	GCNGC	4 cut(s)	72, 204, 250, 537
Ple19I	CGATCG	1 cut(s)	103
PsiI	TTATAA	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	193, 224, 627
PspPI	GGNCC	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	460
PvuI	CGATCG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	193, 413
RsaNI	GTAC	2 cut(s)	192, 412
SaqAI	TTAA	3 cut(s)	6, 480, 645
SatI	GCNGC	4 cut(s)	71, 203, 249, 536
Sau3AI	GATC	6 cut(s)	96, 100, 214, 352, 382, 460
Sau96I	GGNCC	1 cut(s)	650
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	9 cut(s)	75, 138, 366, 439, 450, 507, 537, 627, 655
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	1 cut(s)	650
Sse9I	AATT	6 cut(s)	165, 279, 289, 341, 477, 520
SspMI	CTAG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	85, 606
TaqI	TCGA	1 cut(s)	99
TasI	AATT	6 cut(s)	165, 279, 289, 341, 477, 520
Tru1I	TTAA	3 cut(s)	6, 480, 645
Tru9I	TTAA	3 cut(s)	6, 480, 645
TscAI	CASTG	2 cut(s)	193, 609
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	4 cut(s)	70, 202, 248, 535
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	4 cut(s)	51, 126, 258, 501
TspGWI	ACGGA	1 cut(s)	574
TspRI	CASTG	2 cut(s)	193, 609
Van91I	CCANNNNNTGG	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.