Prupe.1G469600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016406
Physical Location & Seq
Reverse (-)
39126381 .. 39127570
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G469600.1

Sequence Viewer

Length: 726 bp
ATGGCTAACCATCAATACCCACCAAATGGTGACAAAGAAAAGAGAGAAAACATGGAGAAAAGAAAACAGGAGTTGCTAACTACCATTGAGAAGCAGGATGATAAAGTACATCAACTTCAAACGAGCGCCTTCAACCTTGCAAACTACTACTTCGTCTTTCAAGGTATTATTTTGGGGGCTATCGTCACTGCCACCTCAGCCCTCAGATGCTCAGATCGCTGGTTCCTTTTCAGCCTCTCTCTGATAGCAGCTATACTCAACTTGGTTTCATTGCTTGTAATTGGAAGCAATTATAAAAGAAGCGTCATGCAGAGACACCAAACCAAGAGTGAGCTCATTGAATTGGAAAGTGATCTGAGCAAGCTAGAAACTTCACCTTCAGATCAAGGGCTCAAAACTAAAATATTAACCTACTGGGATACGACAAATATTCAACATCCACAGGTTGCTTCTCATCATCCTACGACCCTGGATATTAAGGATGAATCGGAAGTAAGGCATAAAAGGAGGGTCATTCCTGTTGTTACAAATCATCTACGTGAGTTCTACTTCGTACTTTGCATGGGTATATTTATAATCTTTGCCGTCATCGTGATTGTGGGTTGCTGGACTATTCCTTGCAAGAAAACTCTTCAATGCACACCCCAGATATCGAACGCCAACAGTGATAAATGTATTAGGGTTTGTGAAGGTGCCAAGTGTATGAGCATCTGCGCCCAGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

242

Amino Acids

27.49

Weight (kDa)

8.69

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 294, 575
AccB1I GGYRCC 1 cut(s) 692
AccB7I CCANNNNNTGG 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 2 cut(s) 108, 555
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 6 cut(s) 119, 133, 161, 341, 434, 635
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 3 cut(s) 251, 334, 364
AluI AGCT 3 cut(s) 251, 334, 364
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 1 cut(s) 307
ApeKI GCWGC 1 cut(s) 248
AspLEI GCGC 2 cut(s) 128, 716
AsuHPI GGTGA 2 cut(s) 41, 366
BanI GGYRCC 1 cut(s) 692
BanII GRGCYC 2 cut(s) 336, 393
BarI GAAGNNNNNNTAC 2 cut(s) 99, 131
Bbv12I GWGCWC 1 cut(s) 336
BbvCI CCTCAGC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 260
BccI CCATC 1 cut(s) 18
BceAI ACGGC 1 cut(s) 569
BciT130I CCWGG 1 cut(s) 470
BciVI GTATCC 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 1 cut(s) 365
BfoI RGCGCY 1 cut(s) 129
BfuI GTATCC 1 cut(s) 412
BisI GCNGC 1 cut(s) 249
BlsI GCNGC 1 cut(s) 250
Bme1390I CCNGG 1 cut(s) 470
BmiI GGNNCC 2 cut(s) 224, 694
BmrFI CCNGG 1 cut(s) 470
BmrI ACTGGG 2 cut(s) 424, 712
BmsI GCATC 2 cut(s) 197, 717
BmuI ACTGGG 2 cut(s) 424, 712
Bpu10I CCTNAGC 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 468
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 419, 718
Bse3DI GCAATG 1 cut(s) 269
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 1 cut(s) 468
BseGI GGATG 4 cut(s) 103, 436, 457, 487
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 4 cut(s) 210, 217, 225, 347
BseNI ACTGG 2 cut(s) 419, 718
BseXI GCAGC 1 cut(s) 260
BshNI GGYRCC 1 cut(s) 692
BsiHKAI GWGCWC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 307
Bsp1286I GDGCHC 2 cut(s) 336, 393
Bsp143I GATC 3 cut(s) 214, 352, 382
BspCNI CTCAG 4 cut(s) 209, 216, 224, 348
BspLI GGNNCC 2 cut(s) 224, 694
BspT107I GGYRCC 1 cut(s) 692
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 2 cut(s) 419, 718
BssECI CCNNGG 1 cut(s) 468
BssMI GATC 3 cut(s) 214, 352, 382
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 1 cut(s) 665
Bst6I CTCTTC 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 362
BstDEI CTNAG 4 cut(s) 196, 203, 211, 356
BstF5I GGATG 4 cut(s) 103, 436, 457, 487
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 2 cut(s) 128, 716
BstKTI GATC 3 cut(s) 217, 355, 385
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 3 cut(s) 214, 352, 382
BstMWI GCNNNNNNNGC 2 cut(s) 197, 216
BstNI CCWGG 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 468
BstV1I GCAGC 1 cut(s) 260
BsuI GTATCC 1 cut(s) 412
BtsCI GGATG 4 cut(s) 103, 436, 457, 487
BtsI GCAGTG 1 cut(s) 186
BtsIMutI CAGTG 2 cut(s) 186, 670
Cac8I GCNNGC 1 cut(s) 362
CfoI GCGC 2 cut(s) 128, 716
CseI GACGC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 107, 554
CviAII CATG 3 cut(s) 52, 307, 562
CviJI RGCY 8 cut(s) 5, 179, 200, 234, 251, 334, 364, 391
CviKI_1 RGCY 8 cut(s) 5, 179, 200, 234, 251, 334, 364, 391
CviQI GTAC 2 cut(s) 107, 554
DdeI CTNAG 4 cut(s) 196, 203, 211, 356
DpnI GATC 3 cut(s) 216, 354, 384
DpnII GATC 3 cut(s) 214, 352, 382
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
Ecl136II GAGCTC 1 cut(s) 334
Eco24I GRGCYC 2 cut(s) 336, 393
Eco32I GATATC 1 cut(s) 651
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 363
EcoICRI GAGCTC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 468
EcoRV GATATC 1 cut(s) 651
EcoT38I GRGCYC 2 cut(s) 336, 393
FaeI CATG 3 cut(s) 55, 310, 565
FaiI YATR 9 cut(s) 53, 254, 294, 308, 501, 563, 569, 575, 704
FatI CATG 3 cut(s) 51, 306, 561
Fnu4HI GCNGC 1 cut(s) 249
FokI GGATG 4 cut(s) 110, 423, 444, 494
FriOI GRGCYC 2 cut(s) 336, 393
Fsp4HI GCNGC 1 cut(s) 249
FspBI CTAG 1 cut(s) 365
GlaI GCGC 2 cut(s) 127, 715
GluI GCNGC 1 cut(s) 249
HaeII RGCGCY 1 cut(s) 129
HgaI GACGC 1 cut(s) 292
HhaI GCGC 2 cut(s) 128, 716
Hin1II CATG 3 cut(s) 55, 310, 565
Hin6I GCGC 2 cut(s) 126, 714
HinP1I GCGC 2 cut(s) 126, 714
HinfI GANTC 1 cut(s) 485
HphI GGTGA 2 cut(s) 41, 366
Hpy188I TCNGA 6 cut(s) 206, 214, 243, 357, 382, 490
Hpy188III TCNNGA 1 cut(s) 592
HpyAV CCTTC 3 cut(s) 139, 387, 683
HpyCH4III ACNGT 1 cut(s) 665
HpyCH4IV ACGT 1 cut(s) 538
HpyCH4V TGCA 5 cut(s) 140, 310, 561, 621, 639
HpyF10VI GCNNNNNNNGC 2 cut(s) 197, 216
HpyF3I CTNAG 4 cut(s) 196, 203, 211, 356
HpySE526I ACGT 1 cut(s) 538
Hsp92II CATG 3 cut(s) 55, 310, 565
HspAI GCGC 2 cut(s) 126, 714
Kzo9I GATC 3 cut(s) 214, 352, 382
Lsp1109I GCAGC 1 cut(s) 260
LweI GCATC 2 cut(s) 197, 717
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 538
MaeIII GTNAC 3 cut(s) 29, 184, 523
MalI GATC 3 cut(s) 216, 354, 384
MboI GATC 3 cut(s) 214, 352, 382
MboII GAAGA 1 cut(s) 623
MhlI GDGCHC 2 cut(s) 336, 393
MluCI AATT 3 cut(s) 279, 289, 341
MnlI CCTC 4 cut(s) 205, 212, 245, 501
MseI TTAA 2 cut(s) 407, 477
MslI CAYNNNNRTG 1 cut(s) 537
MspR9I CCNGG 1 cut(s) 470
MvaI CCWGG 1 cut(s) 470
MwoI GCNNNNNNNGC 2 cut(s) 197, 216
NdeII GATC 3 cut(s) 214, 352, 382
NlaIII CATG 3 cut(s) 55, 310, 565
NlaIV GGNNCC 2 cut(s) 224, 694
NmuCI GTSAC 2 cut(s) 29, 184
PfeI GAWTC 1 cut(s) 485
PflMI CCANNNNNTGG 1 cut(s) 26
PkrI GCNGC 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 539
PsiI TTATAA 2 cut(s) 294, 575
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 2 cut(s) 224, 694
RsaI GTAC 2 cut(s) 108, 555
RsaNI GTAC 2 cut(s) 107, 554
RseI CAYNNNNRTG 1 cut(s) 537
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 407, 477
SatI GCNGC 1 cut(s) 249
Sau3AI GATC 3 cut(s) 214, 352, 382
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 2 cut(s) 336, 393
SfaNI GCATC 2 cut(s) 197, 717
SmiMI CAYNNNNRTG 1 cut(s) 537
Sse9I AATT 3 cut(s) 279, 289, 341
SspI AATATT 2 cut(s) 405, 430
SspMI CTAG 1 cut(s) 365
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 468
TaaI ACNGT 1 cut(s) 665
TaiI ACGT 1 cut(s) 541
TaqI TCGA 1 cut(s) 653
TasI AATT 3 cut(s) 279, 289, 341
TatI WGTACW 1 cut(s) 106
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 2 cut(s) 407, 477
Tru9I TTAA 2 cut(s) 407, 477
TscAI CASTG 2 cut(s) 193, 670
TseFI GTSAC 2 cut(s) 29, 184
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 2 cut(s) 29, 184
TspDTI ATGAA 2 cut(s) 258, 498
TspRI CASTG 2 cut(s) 193, 670
Van91I CCANNNNNTGG 1 cut(s) 26
XspI CTAG 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.