Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016406

Physical Location & Seq

Genomic Coordinates Reverse (-)

39160118 .. 39161336

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G470100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCCAACCATCCGTGTCCACCAAATGGTGACAAAGAAAAAAAAGAAAACATGGAGAAAAGAAAAGAGGAGCTACAAGCTACAATTGAGAAGCAGGACGATCGTGTAAACCATCTTCAAACAAGTGCCTTCAACCTTGCAAACTACTACTTCGTCTTTCAAGGAATTCTGTTGGGGGCTATCGTCACTGCCACCACAGCGCTGCGATGCTCAGATCGCTGGTTCCTTTTCGGCCTCTCTCTAATTGCAGCCATACTCAACTTGGTTTCATTGCTCGTAATTGGAGGCAATTATAAAAGAAGCGTCATGCAGAGACACCAAAGCAAGATTGAGCGCAATAAATTGGAAAGTGATCTGGCGAAGCTAGAAACTTCACCTTCAGATCATGGGCTCAAAAGTGACATATTATCGTACTGGACTTCAACGAAAATAGAAGCTTCAGGGCAGGTCGCTTCTCAGGATCTTGCAACTGTAGAAATTAAGGATGAACCGGAACAAAGGCAGATCCGCAAGGGGGTTGTGCCGGTTGATAATCAACACAAACAGCTGCGTGATTTCTACTTTCTACTGTGCATGGCTCTCTTTGTATGCTTTTCCGTCATCGTGATTGTGGGTTGCTGGACCATCCCTTGCAAGAAAGCTCTTCAATGCATACCCCCCATATCCAGCAATGACAACTGCATTAGGGTTTGTGAAGGTGGCAAGTGCATGAGCATGTGCACCGAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.4

Weight (kDa)

7.97

Isoelectric Point (pI)

51.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016406)

Species	Orthologous Gene IDs
malus_domestica	MD15G1111300.v1.1 MD15G1112200.v1.1
prunus_persica	Prupe.1G469500_v2.0.a1 Prupe.1G469600_v2.0.a1 Prupe.1G469800_v2.0.a1 Prupe.1G470100_v2.0.a1 Prupe.1G470300_v2.0.a1 Prupe.1G470400_v2.0.a1 Prupe.1G470500_v2.0.a1 Prupe.1G470600_v2.0.a1
pyrus_communis	pycom15g10320
rosa_laevigata	RLG00000003048
rosa_roxburghii	Rroxscaffold_3G00248420
rosa_rugosa	Rorug05G0539700 Rorug05G0540800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
Acc36I	ACCTGC	1 cut(s)	436
AccB7I	CCANNNNNTGG	1 cut(s)	26
AciI	CCGC	1 cut(s)	508
AclWI	GGATC	2 cut(s)	468, 499
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	165
AcuI	CTGAAG	2 cut(s)	363, 423
AfaI	GTAC	1 cut(s)	413
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	26, 514
AgsI	TTSAA	5 cut(s)	119, 133, 161, 423, 647
AluBI	AGCT	6 cut(s)	73, 80, 364, 437, 547, 641
AluI	AGCT	6 cut(s)	73, 80, 364, 437, 547, 641
Alw21I	GWGCWC	1 cut(s)	722
Alw26I	GTCTC	1 cut(s)	307
Alw44I	GTGCAC	1 cut(s)	718
AlwI	GGATC	2 cut(s)	468, 499
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	2 cut(s)	3, 232
ApaLI	GTGCAC	1 cut(s)	718
ApeKI	GCWGC	3 cut(s)	202, 248, 547
ApoI	RAATTY	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	202, 336
AspS9I	GGNCC	1 cut(s)	621
AsuHPI	GGTGA	2 cut(s)	41, 366
AvaII	GGWCC	1 cut(s)	621
BaeGI	GKGCMC	1 cut(s)	722
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	99, 131
Bbv12I	GWGCWC	1 cut(s)	722
BbvI	GCAGC	3 cut(s)	189, 260, 534
BccI	CCATC	3 cut(s)	18, 120, 632
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	365, 730
BfmI	CTRYAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	436
BisI	GCNGC	3 cut(s)	203, 249, 548
BlsI	GCNGC	3 cut(s)	204, 250, 549
Bme18I	GGWCC	1 cut(s)	621
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	1 cut(s)	224
BmsI	GCATC	1 cut(s)	197
BsaWI	WCCGGW	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 514
Bse118I	RCCGGY	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	419
Bse3DI	GCAATG	2 cut(s)	269, 676
BseGI	GGATG	3 cut(s)	10, 490, 624
BseLI	CCNNNNNNNGG	2 cut(s)	26, 514
BseMI	GCAATG	2 cut(s)	269, 676
BseMII	CTCAG	2 cut(s)	225, 470
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	722
BseXI	GCAGC	3 cut(s)	189, 260, 534
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	5, 234
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	722
BsiSI	CCGG	2 cut(s)	491, 524
BslI	CCNNNNNNNGG	2 cut(s)	26, 514
BsmAI	GTCTC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	5, 234
Bsp1286I	GDGCHC	2 cut(s)	393, 722
Bsp143I	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
BspACI	CCGC	1 cut(s)	508
BspANI	GGCC	2 cut(s)	5, 234
BspCNI	CTCAG	2 cut(s)	224, 469
BspLI	GGNNCC	1 cut(s)	224
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	2 cut(s)	468, 499
BspQI	GCTCTTC	1 cut(s)	648
BsrDI	GCAATG	2 cut(s)	269, 676
BsrFI	RCCGGY	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	523
BssMI	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
Bst4CI	ACNGT	2 cut(s)	472, 570
Bst6I	CTCTTC	1 cut(s)	648
BstDEI	CTNAG	2 cut(s)	211, 456
BstF5I	GGATG	3 cut(s)	10, 490, 624
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	202, 336
BstKTI	GATC	6 cut(s)	103, 217, 355, 385, 463, 507
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 216
BstNSI	RCATGY	1 cut(s)	718
BstSFI	CTRYAG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	722
BstV1I	GCAGC	3 cut(s)	189, 260, 534
BstX2I	RGATCY	2 cut(s)	460, 504
BstYI	RGATCY	2 cut(s)	460, 504
BsuRI	GGCC	2 cut(s)	5, 234
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	10, 490, 624
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	436
CfoI	GCGC	2 cut(s)	202, 336
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	621
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	6 cut(s)	52, 307, 386, 574, 709, 715
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	2 cut(s)	211, 456
DpnI	GATC	6 cut(s)	102, 216, 354, 384, 462, 506
DpnII	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Eco24I	GRGCYC	1 cut(s)	393
Eco47I	GGWCC	1 cut(s)	621
Eco47III	AGCGCT	1 cut(s)	201
Eco57I	CTGAAG	2 cut(s)	363, 423
EcoRI	GAATTC	1 cut(s)	165
EcoT22I	ATGCAT	1 cut(s)	653
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	6 cut(s)	55, 310, 389, 577, 712, 718
FatI	CATG	6 cut(s)	51, 306, 385, 573, 708, 714
Fnu4HI	GCNGC	3 cut(s)	203, 249, 548
FokI	GGATG	2 cut(s)	497, 611
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	3 cut(s)	203, 249, 548
FspBI	CTAG	2 cut(s)	365, 730
GlaI	GCGC	2 cut(s)	201, 335
GluI	GCNGC	3 cut(s)	203, 249, 548
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	5, 234
HapII	CCGG	2 cut(s)	491, 524
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	2 cut(s)	202, 336
Hin1II	CATG	6 cut(s)	55, 310, 389, 577, 712, 718
Hin6I	GCGC	2 cut(s)	200, 334
HinP1I	GCGC	2 cut(s)	200, 334
HindIII	AAGCTT	1 cut(s)	435
HpaII	CCGG	2 cut(s)	491, 524
HphI	GGTGA	2 cut(s)	41, 366
Hpy166II	GTNNAC	3 cut(s)	20, 109, 720
Hpy188I	TCNGA	2 cut(s)	214, 382
Hpy188III	TCNNGA	2 cut(s)	458, 604
Hpy8I	GTNNAC	3 cut(s)	20, 109, 720
HpyAV	CCTTC	3 cut(s)	139, 387, 689
HpyCH4III	ACNGT	2 cut(s)	472, 570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 216
HpyF3I	CTNAG	2 cut(s)	211, 456
Hsp92II	CATG	6 cut(s)	55, 310, 389, 577, 712, 718
HspAI	GCGC	2 cut(s)	200, 334
Kzo9I	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	3 cut(s)	189, 260, 534
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	2 cut(s)	365, 730
MaeIII	GTNAC	3 cut(s)	29, 184, 398
MalI	GATC	6 cut(s)	102, 216, 354, 384, 462, 506
MboI	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
MboII	GAAGA	2 cut(s)	107, 635
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	2 cut(s)	460, 504
MhlI	GDGCHC	2 cut(s)	393, 722
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	84, 165, 243, 279, 289, 341, 477
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	61, 245, 278
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	653
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	480
MslI	CAYNNNNRTG	1 cut(s)	713
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	547
MspI	CCGG	2 cut(s)	491, 524
MunI	CAATTG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	197, 216
NdeII	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
NlaIII	CATG	6 cut(s)	55, 310, 389, 577, 712, 718
NlaIV	GGNNCC	1 cut(s)	224
NmuCI	GTSAC	3 cut(s)	29, 184, 398
NsiI	ATGCAT	1 cut(s)	653
NspI	RCATGY	1 cut(s)	718
PciSI	GCTCTTC	1 cut(s)	648
PflMI	CCANNNNNTGG	1 cut(s)	26
PkrI	GCNGC	3 cut(s)	204, 250, 549
Ple19I	CGATCG	1 cut(s)	103
PsiI	TTATAA	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	621
PsuI	RGATCY	2 cut(s)	460, 504
PvuI	CGATCG	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	713
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	3 cut(s)	203, 249, 548
Sau3AI	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
Sau96I	GGNCC	1 cut(s)	621
SduI	GDGCHC	2 cut(s)	393, 722
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	471
SinI	GGWCC	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	713
Sse9I	AATT	7 cut(s)	84, 165, 243, 279, 289, 341, 477
SsiI	CCGC	1 cut(s)	508
SspMI	CTAG	2 cut(s)	365, 730
TaaI	ACNGT	2 cut(s)	472, 570
TasI	AATT	7 cut(s)	84, 165, 243, 279, 289, 341, 477
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	3 cut(s)	29, 184, 398
TseI	GCWGC	3 cut(s)	202, 248, 547
Tsp45I	GTSAC	3 cut(s)	29, 184, 398
TspDTI	ATGAA	2 cut(s)	258, 501
TspGWI	ACGGA	1 cut(s)	586
TspRI	CASTG	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	26
VneI	GTGCAC	1 cut(s)	718
VpaK11BI	GGWCC	1 cut(s)	621
XapI	RAATTY	1 cut(s)	165
XceI	RCATGY	1 cut(s)	718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XspI	CTAG	2 cut(s)	365, 730
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.