Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016406

Physical Location & Seq

Genomic Coordinates Reverse (-)

39167339 .. 39168906

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G470400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTTAACCAGACATGTCCACCAAATGGTGACAATGAAAAAAAAGAAAACATGGACAAAAGAAAAGAGGAGCTACAAGCTGTAATTGAGAAGCAGGACGATCGTGTAAACCATCTTCAAACGGGTGCCTTCAACCTTGCAAACTACTACTTCGTCTTCCAAGGAATTCTTTTGGGGGCTATCATCACTGCCACCACAGCGCTCCGATGCTCAGATCATTGGTTCCTTTTCAGCCTCTCTCTAATTGCAACCGTTTTCAATTTGGTTTCATTTCTTGTAATTGGAAGCAATTATAAAAGAAGTGTCCTGCAGAGACACCAAACCAAGATTGAGCGAAATAAATTGGAAAGTGATCTGGTGAAGCTAGAAACTTCACCTTCAGATCATGGGCTCAAAGCCAACATATTATCGTACTGGACTTCAACGATAATAGAAGCTTCAGGGCAGGTTGCTTCTGAAGATCCTACAACCGTAGAAATTAAGGATGAAAGGGAACAAAGGCAGATCCGCAAGGGGGTTGTGCCGGTTGATAATCATCATAAACAGATGCGTGATTTCTACTTTCTACTTTGCATGGGTCTCTTTATATGCTTTTCCGTCATCGTGACTGTGGGTTGCTGGACCATTCCTTGCAAGAAAGCTCTTCAATGCATACCCCCCATATCCAACACTGAGAACTGCATCACGGTATGTGAAGGTGGCAAGTGTATGAGCATGTGCACCGAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.55

Weight (kDa)

6.59

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016406)

Species	Orthologous Gene IDs
malus_domestica	MD15G1111300.v1.1 MD15G1112200.v1.1
prunus_persica	Prupe.1G469500_v2.0.a1 Prupe.1G469600_v2.0.a1 Prupe.1G469800_v2.0.a1 Prupe.1G470100_v2.0.a1 Prupe.1G470300_v2.0.a1 Prupe.1G470400_v2.0.a1 Prupe.1G470500_v2.0.a1 Prupe.1G470600_v2.0.a1
pyrus_communis	pycom15g10320
rosa_laevigata	RLG00000003048
rosa_roxburghii	Rroxscaffold_3G00248420
rosa_rugosa	Rorug05G0539700 Rorug05G0540800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
Acc36I	ACCTGC	1 cut(s)	436
AccB1I	GGYRCC	1 cut(s)	125
AccB7I	CCANNNNNTGG	1 cut(s)	26
AciI	CCGC	1 cut(s)	508
AclWI	GGATC	2 cut(s)	455, 499
AcsI	RAATTY	1 cut(s)	165
AcuI	CTGAAG	3 cut(s)	363, 423, 477
AfaI	GTAC	1 cut(s)	413
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	26, 514
AflIII	ACRYGT	1 cut(s)	14
AgsI	TTSAA	5 cut(s)	119, 133, 259, 423, 647
AluBI	AGCT	5 cut(s)	73, 80, 364, 437, 641
AluI	AGCT	5 cut(s)	73, 80, 364, 437, 641
Alw21I	GWGCWC	1 cut(s)	722
Alw26I	GTCTC	2 cut(s)	307, 584
Alw44I	GTGCAC	1 cut(s)	718
AlwI	GGATC	2 cut(s)	455, 499
Aor51HI	AGCGCT	1 cut(s)	201
ApaLI	GTGCAC	1 cut(s)	718
ApoI	RAATTY	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	621
AsuHPI	GGTGA	3 cut(s)	41, 366, 370
AvaII	GGWCC	1 cut(s)	621
BaeGI	GKGCMC	1 cut(s)	722
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	99, 131
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	722
BccI	CCATC	1 cut(s)	120
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BcoDI	GTCTC	2 cut(s)	307, 584
BfaI	CTAG	2 cut(s)	365, 730
BfmI	CTRYAG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	436
Bme18I	GGWCC	1 cut(s)	621
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	2 cut(s)	127, 224
BmsI	GCATC	3 cut(s)	197, 537, 690
BpiI	GAAGAC	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	534
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 514
Bse118I	RCCGGY	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	419
Bse8I	GATNNNNATC	1 cut(s)	534
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	490
BseJI	GATNNNNATC	1 cut(s)	534
BseLI	CCNNNNNNNGG	2 cut(s)	26, 514
BseMII	CTCAG	2 cut(s)	225, 663
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	722
Bsh1285I	CGRYCG	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	722
BsiSI	CCGG	1 cut(s)	524
BslI	CCNNNNNNNGG	2 cut(s)	26, 514
BsmAI	GTCTC	2 cut(s)	307, 584
Bso31I	GGTCTC	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	393, 722
Bsp143I	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
BspACI	CCGC	1 cut(s)	508
BspCNI	CTCAG	2 cut(s)	224, 664
BspLI	GGNNCC	2 cut(s)	127, 224
BspMAI	CTGCAG	1 cut(s)	312
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	2 cut(s)	455, 499
BspQI	GCTCTTC	1 cut(s)	648
BspT107I	GGYRCC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	584
BsrFI	RCCGGY	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
BssT1I	CCWWGG	1 cut(s)	160
Bst4CI	ACNGT	4 cut(s)	253, 472, 610, 688
Bst6I	CTCTTC	1 cut(s)	648
BstDEI	CTNAG	2 cut(s)	211, 672
BstF5I	GGATG	1 cut(s)	490
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	6 cut(s)	103, 217, 355, 385, 463, 507
BstMAI	GTCTC	2 cut(s)	307, 584
BstMBI	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	18, 718
BstSFI	CTRYAG	1 cut(s)	308
BstSLI	GKGCMC	1 cut(s)	722
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	2 cut(s)	460, 504
BstYI	RGATCY	2 cut(s)	460, 504
BtsCI	GGATG	1 cut(s)	490
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	2 cut(s)	186, 669
BveI	ACCTGC	1 cut(s)	436
CfoI	GCGC	1 cut(s)	202
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	621
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	5 cut(s)	15, 52, 386, 574, 715
CviJI	RGCY	9 cut(s)	73, 80, 179, 234, 364, 391, 398, 437, 641
CviKI_1	RGCY	9 cut(s)	73, 80, 179, 234, 364, 391, 398, 437, 641
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	2 cut(s)	211, 672
DpnI	GATC	6 cut(s)	102, 216, 354, 384, 462, 506
DpnII	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
Eco130I	CCWWGG	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	621
Eco47III	AGCGCT	1 cut(s)	201
Eco57I	CTGAAG	3 cut(s)	363, 423, 477
EcoRI	GAATTC	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	160
EcoT22I	ATGCAT	1 cut(s)	653
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	5 cut(s)	18, 55, 389, 577, 718
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	5 cut(s)	14, 51, 385, 573, 714
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	1 cut(s)	393
FspBI	CTAG	2 cut(s)	365, 730
GlaI	GCGC	1 cut(s)	201
HaeII	RGCGCY	1 cut(s)	203
HapII	CCGG	1 cut(s)	524
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	5 cut(s)	18, 55, 389, 577, 718
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	435
HpaI	GTTAAC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	3 cut(s)	41, 366, 370
Hpy166II	GTNNAC	4 cut(s)	7, 20, 109, 720
Hpy188I	TCNGA	4 cut(s)	206, 214, 382, 457
Hpy188III	TCNNGA	1 cut(s)	604
Hpy8I	GTNNAC	4 cut(s)	7, 20, 109, 720
HpyAV	CCTTC	3 cut(s)	139, 387, 689
HpyCH4III	ACNGT	4 cut(s)	253, 472, 610, 688
HpyCH4V	TGCA	8 cut(s)	140, 248, 310, 573, 633, 651, 681, 720
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	211, 672
Hsp92II	CATG	5 cut(s)	18, 55, 389, 577, 718
HspAI	GCGC	1 cut(s)	200
KspAI	GTTAAC	1 cut(s)	7
Kzo9I	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	2 cut(s)	70, 207
LpnPI	CCDG	9 cut(s)	23, 80, 320, 341, 400, 426, 431, 537, 604
LweI	GCATC	3 cut(s)	197, 537, 690
MaeI	CTAG	2 cut(s)	365, 730
MaeIII	GTNAC	2 cut(s)	29, 604
MalI	GATC	6 cut(s)	102, 216, 354, 384, 462, 506
MboI	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
MboII	GAAGA	4 cut(s)	107, 148, 470, 635
MflI	RGATCY	2 cut(s)	460, 504
MhlI	GDGCHC	2 cut(s)	393, 722
MluCI	AATT	8 cut(s)	84, 165, 243, 259, 279, 289, 341, 477
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	2 cut(s)	61, 245
Mph1103I	ATGCAT	1 cut(s)	653
MseI	TTAA	2 cut(s)	6, 480
MspI	CCGG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
NlaIII	CATG	5 cut(s)	18, 55, 389, 577, 718
NlaIV	GGNNCC	2 cut(s)	127, 224
NmuCI	GTSAC	2 cut(s)	29, 604
NsiI	ATGCAT	1 cut(s)	653
NspI	RCATGY	2 cut(s)	18, 718
PciI	ACATGT	1 cut(s)	14
PciSI	GCTCTTC	1 cut(s)	648
PflMI	CCANNNNNTGG	1 cut(s)	26
Ple19I	CGATCG	1 cut(s)	103
PscI	ACATGT	1 cut(s)	14
PsiI	TTATAA	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	127, 224
PspPI	GGNCC	1 cut(s)	621
PstI	CTGCAG	1 cut(s)	312
PsuI	RGATCY	2 cut(s)	460, 504
PvuI	CGATCG	1 cut(s)	103
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SapI	GCTCTTC	1 cut(s)	648
SaqAI	TTAA	2 cut(s)	6, 480
Sau3AI	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
Sau96I	GGNCC	1 cut(s)	621
SduI	GDGCHC	2 cut(s)	393, 722
SetI	ASST	9 cut(s)	75, 82, 138, 366, 379, 439, 450, 643, 700
SfaNI	GCATC	3 cut(s)	197, 537, 690
SfcI	CTRYAG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	621
Sse9I	AATT	8 cut(s)	84, 165, 243, 259, 279, 289, 341, 477
SsiI	CCGC	1 cut(s)	508
SspMI	CTAG	2 cut(s)	365, 730
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	4 cut(s)	253, 472, 610, 688
TasI	AATT	8 cut(s)	84, 165, 243, 259, 279, 289, 341, 477
Tru1I	TTAA	2 cut(s)	6, 480
Tru9I	TTAA	2 cut(s)	6, 480
TscAI	CASTG	2 cut(s)	193, 676
TseFI	GTSAC	2 cut(s)	29, 604
Tsp45I	GTSAC	2 cut(s)	29, 604
TspDTI	ATGAA	3 cut(s)	51, 258, 501
TspGWI	ACGGA	1 cut(s)	586
TspRI	CASTG	2 cut(s)	193, 676
Van91I	CCANNNNNTGG	1 cut(s)	26
VneI	GTGCAC	1 cut(s)	718
VpaK11BI	GGWCC	1 cut(s)	621
XapI	RAATTY	1 cut(s)	165
XceI	RCATGY	2 cut(s)	18, 718
XspI	CTAG	2 cut(s)	365, 730
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.