Rorug05G0540800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016406
Physical Location & Seq
Forward (+)
72919984 .. 72920817
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0540800.1

Sequence Viewer

Length: 834 bp
ATGTTGGAGGAAAGAAGTTTTGCACATACGTACAATGATACTCTGACTCGGCCGGAGCCTAATTCGATGCTTGCTACAATGTTTAGTGGACGTCATTCCTTAATTCAAGATCATGAGGGATATACTTTCATTGATAGGGATGGTGAATATTTTGGGTACATCCTTAATTGGTTGAGAGATGGTGATGTTCCTAGTCTGAAGGATTCTAAGTATTCACAACTACTGAAGGAGGCAGAATACCTTGAACTCCAAGGATTGATAGATGAAATTAATGATGTCCTGAAAAATAAGAGGAAAAAGAAGTTGGGTGCAGCAGATCTAACACGCACTGATATTATCAAGTTCATACATAATGAAACGAGCTGTATGAAGAGCTGGAATGATTCTCCTCGGCGGTTGAAGTTTAAAGGTGTAAATCTTTCTGGCCTTGATCTTTCTGGTTTGGACTTTTCAAATGCAAATCTTACAGAGTCATGTTTCAATCATGTTGATGCTGAAGGTGGAGACTTTATCTCTGCATGTATGAGAAATGTGTGCTTTTCAAACGCAAATCTTTCAGAGTCGTGTTTCAATCATGTTGATGCCGAAGGTGGGGACTTTAGCCATGCAAGTTTGAAAAAAGTGCGCTTTTCAAATGCAAATCTTACACAGTCGTGTTTCGATCATGTTGATGCCGAAGGTGCAAACTTTAACAAAGCGAATTTGCAAGGATCTTTATTTACTTGTTCAAATCTTCGAGGAGCTTCTGTAGTTGGTGTTAAAAATAGATCTTCATCTTTTCGATTACAAACCTTTGCTCAAGCTGTACGGAATGTGCGGAATGTGGGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

31.02

Weight (kDa)

6.45

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB_2 PF02214 9 - 87 2.7e-12 BTB/POZ domain
Pentapeptide PF00805 135 - 170 4.1e-07 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 170 - 222 2.6e-07 Pentapeptide repeat region
Pentapeptide PF00805 179 - 217 9.9e-07 Pentapeptide repeats (8 copies)
Pentapeptide_4 PF13599 200 - 264 3e-07 Pentapeptide repeat region
Pentapeptide PF00805 218 - 253 8.6e-06 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 94
AciI CCGC 2 cut(s) 394, 817
AclWI GGATC 1 cut(s) 718
AcoI YGGCCR 1 cut(s) 50
AcsI RAATTY 1 cut(s) 700
AcuI CTGAAG 3 cut(s) 218, 245, 516
AcyI GRCGYC 1 cut(s) 91
AfaI GTAC 3 cut(s) 32, 158, 807
AfiI CCNNNNNNNGG 1 cut(s) 591
AjuI GAANNNNNNNTTGG 2 cut(s) 287, 319
AleI CACNNNNGTG 1 cut(s) 652
AluBI AGCT 4 cut(s) 363, 375, 743, 803
AluI AGCT 4 cut(s) 363, 375, 743, 803
Alw26I GTCTC 1 cut(s) 498
AlwI GGATC 1 cut(s) 718
AoxI GGCC 2 cut(s) 50, 424
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 700
AseI ATTAAT 1 cut(s) 270
AspLEI GCGC 1 cut(s) 627
AsuHPI GGTGA 2 cut(s) 155, 194
BbvI GCAGC 1 cut(s) 323
BccI CCATC 2 cut(s) 134, 173
BcoDI GTCTC 1 cut(s) 498
BfaI CTAG 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 747
BglII AGATCT 2 cut(s) 316, 767
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 4 cut(s) 57, 481, 571, 661
BpuEI CTTGAG 1 cut(s) 783
BsaAI YACGTR 1 cut(s) 30
BsaBI GATNNNNATC 1 cut(s) 772
BsaHI GRCGYC 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 250, 389
BsaXI ACNNNNNCTCC 2 cut(s) 732, 762
Bsc4I CCNNNNNNNGG 1 cut(s) 591
Bse8I GATNNNNATC 1 cut(s) 772
BseDI CCNNGG 2 cut(s) 250, 389
BseGI GGATG 2 cut(s) 145, 159
BseJI GATNNNNATC 1 cut(s) 772
BseLI CCNNNNNNNGG 1 cut(s) 591
BseRI GAGGAG 2 cut(s) 378, 753
BseX3I CGGCCG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 330
Bsh1285I CGRYCG 1 cut(s) 53
BshFI GGCC 2 cut(s) 52, 426
BsiEI CGRYCG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 53
BslFI GGGAC 1 cut(s) 608
BslI CCNNNNNNNGG 1 cut(s) 591
BsmAI GTCTC 1 cut(s) 498
BsmFI GGGAC 1 cut(s) 608
BsnI GGCC 2 cut(s) 52, 426
Bsp143I GATC 6 cut(s) 109, 316, 430, 661, 710, 767
BspACI CCGC 2 cut(s) 394, 817
BspANI GGCC 2 cut(s) 52, 426
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 1 cut(s) 718
BspQI GCTCTTC 1 cut(s) 365
BssECI CCNNGG 2 cut(s) 250, 389
BssMI GATC 6 cut(s) 109, 316, 430, 661, 710, 767
BssNI GRCGYC 1 cut(s) 91
BssT1I CCWWGG 1 cut(s) 250
Bst4CI ACNGT 1 cut(s) 651
Bst6I CTCTTC 1 cut(s) 365
BstACI GRCGYC 1 cut(s) 91
BstBAI YACGTR 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 2 cut(s) 145, 159
BstHHI GCGC 1 cut(s) 627
BstKTI GATC 6 cut(s) 112, 319, 433, 664, 713, 770
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 6 cut(s) 109, 316, 430, 661, 710, 767
BstMCI CGRYCG 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 680
BstNSI RCATGY 1 cut(s) 522
BstSFI CTRYAG 1 cut(s) 747
BstSNI TACGTA 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 323
BstX2I RGATCY 3 cut(s) 316, 710, 767
BstYI RGATCY 3 cut(s) 316, 710, 767
BstZI CGGCCG 1 cut(s) 50
BsuRI GGCC 2 cut(s) 52, 426
BtsCI GGATG 2 cut(s) 145, 159
BtsIMutI CAGTG 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 72
CciI TCATGA 1 cut(s) 112
CfoI GCGC 1 cut(s) 627
Csp6I GTAC 3 cut(s) 31, 157, 806
CviAII CATG 7 cut(s) 113, 474, 485, 519, 575, 605, 665
CviJI RGCY 8 cut(s) 52, 58, 363, 375, 426, 603, 743, 803
CviKI_1 RGCY 8 cut(s) 52, 58, 363, 375, 426, 603, 743, 803
CviQI GTAC 3 cut(s) 31, 157, 806
DdeI CTNAG 1 cut(s) 207
DpnI GATC 6 cut(s) 111, 318, 432, 663, 712, 769
DpnII GATC 6 cut(s) 109, 316, 430, 661, 710, 767
DraI TTTAAA 1 cut(s) 406
EaeI YGGCCR 1 cut(s) 50
EagI CGGCCG 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 365
EarI CTCTTC 1 cut(s) 365
EclXI CGGCCG 1 cut(s) 50
Eco105I TACGTA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 250
Eco52I CGGCCG 1 cut(s) 50
Eco57I CTGAAG 3 cut(s) 218, 245, 516
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 7 cut(s) 116, 477, 488, 522, 578, 608, 668
FaqI GGGAC 1 cut(s) 608
FatI CATG 7 cut(s) 112, 473, 484, 518, 574, 604, 664
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 2 cut(s) 146, 152
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 626
GluI GCNGC 1 cut(s) 312
HaeIII GGCC 2 cut(s) 52, 426
HapII CCGG 1 cut(s) 53
HhaI GCGC 1 cut(s) 627
Hin1I GRCGYC 1 cut(s) 91
Hin1II CATG 7 cut(s) 116, 477, 488, 522, 578, 608, 668
Hin6I GCGC 1 cut(s) 625
HinP1I GCGC 1 cut(s) 625
HinfI GANTC 5 cut(s) 46, 203, 383, 470, 560
HpaII CCGG 1 cut(s) 53
HphI GGTGA 2 cut(s) 155, 194
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 3 cut(s) 45, 198, 559
Hpy188III TCNNGA 3 cut(s) 107, 113, 280
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 5 cut(s) 193, 220, 491, 581, 671
HpyCH4III ACNGT 1 cut(s) 651
HpyCH4IV ACGT 2 cut(s) 29, 91
HpyCH4V TGCA 8 cut(s) 23, 311, 458, 518, 608, 638, 683, 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 680
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 2 cut(s) 29, 91
Hsp92I GRCGYC 1 cut(s) 91
Hsp92II CATG 7 cut(s) 116, 477, 488, 522, 578, 608, 668
HspAI GCGC 1 cut(s) 625
Kzo9I GATC 6 cut(s) 109, 316, 430, 661, 710, 767
LguI GCTCTTC 1 cut(s) 365
LmnI GCTCC 2 cut(s) 55, 740
LpnPI CCDG 5 cut(s) 66, 293, 361, 408, 423
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 4 cut(s) 57, 481, 571, 661
MaeI CTAG 1 cut(s) 192
MaeII ACGT 2 cut(s) 29, 91
MalI GATC 6 cut(s) 111, 318, 432, 663, 712, 769
MboI GATC 6 cut(s) 109, 316, 430, 661, 710, 767
MboII GAAGA 3 cut(s) 382, 725, 762
MflI RGATCY 3 cut(s) 316, 710, 767
MluCI AATT 5 cut(s) 61, 102, 166, 267, 700
MlyI GAGTC 3 cut(s) 40, 479, 569
MnlI CCTC 5 cut(s) 109, 223, 285, 399, 731
MseI TTAA 6 cut(s) 101, 165, 270, 405, 690, 759
MslI CAYNNNNRTG 4 cut(s) 489, 579, 652, 669
MspI CCGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 680
NdeII GATC 6 cut(s) 109, 316, 430, 661, 710, 767
NlaIII CATG 7 cut(s) 116, 477, 488, 522, 578, 608, 668
NlaIV GGNNCC 1 cut(s) 57
NmeAIII GCCGAG 2 cut(s) 28, 370
NspI RCATGY 1 cut(s) 522
OliI CACNNNNGTG 1 cut(s) 652
PagI TCATGA 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 365
PfeI GAWTC 2 cut(s) 203, 383
PkrI GCNGC 1 cut(s) 313
PleI GAGTC 3 cut(s) 40, 478, 568
PpsI GAGTC 3 cut(s) 40, 478, 568
Ppu21I YACGTR 1 cut(s) 30
PshBI ATTAAT 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 57
PsuI RGATCY 3 cut(s) 316, 710, 767
RsaI GTAC 3 cut(s) 32, 158, 807
RsaNI GTAC 3 cut(s) 31, 157, 806
RseI CAYNNNNRTG 4 cut(s) 489, 579, 652, 669
SapI GCTCTTC 1 cut(s) 365
SaqAI TTAA 6 cut(s) 101, 165, 270, 405, 690, 759
SatI GCNGC 1 cut(s) 312
Sau3AI GATC 6 cut(s) 109, 316, 430, 661, 710, 767
SchI GAGTC 3 cut(s) 40, 479, 569
SfaNI GCATC 4 cut(s) 57, 481, 571, 661
SfcI CTRYAG 1 cut(s) 747
SmiMI CAYNNNNRTG 4 cut(s) 489, 579, 652, 669
SmlI CTYRAG 1 cut(s) 798
SmoI CTYRAG 1 cut(s) 798
SnaBI TACGTA 1 cut(s) 30
Sse9I AATT 5 cut(s) 61, 102, 166, 267, 700
SsiI CCGC 2 cut(s) 394, 817
SspI AATATT 1 cut(s) 149
SspMI CTAG 1 cut(s) 192
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 1 cut(s) 651
TaiI ACGT 2 cut(s) 32, 94
TaqI TCGA 4 cut(s) 65, 660, 736, 781
TasI AATT 5 cut(s) 61, 102, 166, 267, 700
TfiI GAWTC 2 cut(s) 203, 383
Tru1I TTAA 6 cut(s) 101, 165, 270, 405, 690, 759
Tru9I TTAA 6 cut(s) 101, 165, 270, 405, 690, 759
TscAI CASTG 1 cut(s) 334
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 6 cut(s) 118, 279, 334, 369, 383, 762
TspGWI ACGGA 1 cut(s) 823
TspRI CASTG 1 cut(s) 334
VspI ATTAAT 1 cut(s) 270
XapI RAATTY 1 cut(s) 700
XceI RCATGY 1 cut(s) 522
XspI CTAG 1 cut(s) 192
ZraI GACGTC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.