Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016406

Physical Location & Seq

Genomic Coordinates Reverse (-)

39164636 .. 39165043

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G470300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCAGAGACACCAAACCAAGAGTGAGCTCATTGAATTGGAAAGTGATCTGAGAAAGCTAGAAACTTCACCTTCAGATCAAAGGCTCAAAACTAAAATATTAACCTACTGGGATACGACAAAGATTCAACATCCTCAACATCCTACGGCCGTAGAAATTAAGGATGAACTGGAAGTAAGGCATAGAAGGAGGGTCATTCCTGTTGTTACAAATTATCTACGTGAGTTCTACTTTGTACTTTGCATGGGTCTATTTATAATCTTTGCCGTGATCGTGATTGTGGGTTGCTGGACCATTCCTTGCAAGGAAACTCTTCAATGCACGCCCCCGATATCGAACGCCAGCGGTGATAAATGTATTAGGGTTTGTGAAGGTGCCAAGTGTATGAGCATCTGCGCCCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

136

Amino Acids

15.63

Weight (kDa)

8.44

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016406)

Species	Orthologous Gene IDs
malus_domestica	MD15G1111300.v1.1 MD15G1112200.v1.1
prunus_persica	Prupe.1G469500_v2.0.a1 Prupe.1G469600_v2.0.a1 Prupe.1G469800_v2.0.a1 Prupe.1G470100_v2.0.a1 Prupe.1G470300_v2.0.a1 Prupe.1G470400_v2.0.a1 Prupe.1G470500_v2.0.a1 Prupe.1G470600_v2.0.a1
pyrus_communis	pycom15g10320
rosa_laevigata	RLG00000003048
rosa_roxburghii	Rroxscaffold_3G00248420
rosa_rugosa	Rorug05G0539700 Rorug05G0540800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	374
AciI	CCGC	1 cut(s)	345
AcoI	YGGCCR	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	237
AgsI	TTSAA	3 cut(s)	35, 128, 317
AluBI	AGCT	2 cut(s)	28, 58
AluI	AGCT	2 cut(s)	28, 58
Alw21I	GWGCWC	1 cut(s)	30
AoxI	GGCC	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	60, 359
AvaII	GGWCC	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BceAI	ACGGC	3 cut(s)	134, 162, 251
BciVI	GTATCC	1 cut(s)	106
BfaI	CTAG	2 cut(s)	59, 406
BfuI	GTATCC	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	376
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	221
Bse1I	ACTGG	2 cut(s)	113, 174
BseGI	GGATG	3 cut(s)	130, 139, 169
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	2 cut(s)	113, 174
BseX3I	CGGCCG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	374
BsiEI	CGRYCG	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	3 cut(s)	46, 76, 270
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	113, 174
BssMI	GATC	3 cut(s)	46, 76, 270
Bst6I	CTCTTC	1 cut(s)	318
BstBAI	YACGTR	1 cut(s)	221
BstC8I	GCNNGC	2 cut(s)	323, 343
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	3 cut(s)	130, 139, 169
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	3 cut(s)	49, 79, 273
BstMBI	GATC	3 cut(s)	46, 76, 270
BstMCI	CGRYCG	1 cut(s)	150
BstZI	CGGCCG	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	149
BtsCI	GGATG	3 cut(s)	130, 139, 169
Cac8I	GCNNGC	2 cut(s)	323, 343
CfoI	GCGC	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	4 cut(s)	28, 58, 85, 149
CviKI_1	RGCY	4 cut(s)	28, 58, 85, 149
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	3 cut(s)	48, 78, 272
DpnII	GATC	3 cut(s)	46, 76, 270
EaeI	YGGCCR	1 cut(s)	147
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	28
EclXI	CGGCCG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	291
Eco52I	CGGCCG	1 cut(s)	147
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	28
EcoRV	GATATC	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	1 cut(s)	247
FaiI	YATR	4 cut(s)	183, 245, 257, 386
FatI	CATG	1 cut(s)	243
FokI	GGATG	3 cut(s)	117, 126, 176
FriOI	GRGCYC	1 cut(s)	30
FspBI	CTAG	2 cut(s)	59, 406
GlaI	GCGC	1 cut(s)	397
HaeIII	GGCC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	398
Hin1II	CATG	1 cut(s)	247
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HinfI	GANTC	1 cut(s)	124
HphI	GGTGA	2 cut(s)	60, 359
Hpy188I	TCNGA	2 cut(s)	51, 76
Hpy188III	TCNNGA	1 cut(s)	274
HpyAV	CCTTC	3 cut(s)	81, 180, 365
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	4 cut(s)	4, 243, 303, 321
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	247
HspAI	GCGC	1 cut(s)	396
Kzo9I	GATC	3 cut(s)	46, 76, 270
LpnPI	CCDG	5 cut(s)	94, 155, 213, 274, 355
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	2 cut(s)	59, 406
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	3 cut(s)	48, 78, 272
MboI	GATC	3 cut(s)	46, 76, 270
MboII	GAAGA	1 cut(s)	305
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	4 cut(s)	35, 156, 211, 401
MnlI	CCTC	2 cut(s)	144, 183
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	2 cut(s)	101, 159
MspA1I	CMGCKG	1 cut(s)	345
NdeII	GATC	3 cut(s)	46, 76, 270
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	221
PsiI	TTATAA	1 cut(s)	257
Psp124BI	GAGCTC	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	376
PspPI	GGNCC	1 cut(s)	291
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	101, 159
Sau3AI	GATC	3 cut(s)	46, 76, 270
Sau96I	GGNCC	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	6 cut(s)	30, 60, 73, 107, 223, 376
SfaNI	GCATC	1 cut(s)	399
SinI	GGWCC	1 cut(s)	291
Sse9I	AATT	4 cut(s)	35, 156, 211, 401
SsiI	CCGC	1 cut(s)	345
SspI	AATATT	1 cut(s)	99
SspMI	CTAG	2 cut(s)	59, 406
SstI	GAGCTC	1 cut(s)	30
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	335
TasI	AATT	4 cut(s)	35, 156, 211, 401
TatI	WGTACW	1 cut(s)	235
TfiI	GAWTC	1 cut(s)	124
Tru1I	TTAA	2 cut(s)	101, 159
Tru9I	TTAA	2 cut(s)	101, 159
TspDTI	ATGAA	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	2 cut(s)	59, 406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.