Prupe.1G469800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016406
Physical Location & Seq
Reverse (-)
39133668 .. 39134429
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G469800.1

Sequence Viewer

Length: 762 bp
ATGGCTAACAATCCATGTCCAACAAATGTGGAGAAAGAAAATATAGAGAAAAGAAAAGAGGAGCTACGAACTATATTTGAGAACCAGAGTGATCGTGTAAAACATCTTCAAACCAGTGCCTTCACCCTTGCAAACTACTACTTCGTTTTTCAAGGAGTTATTTTGGGGGGCATTGCCAATGTTAGATGCTCAGATCGTTGGTTCTTTTTCAGTCTCTCTCTAATAGCGGCCATACTTAATCTGTTTTCATTGATTGTAATTGGAGGGAATTATAAAAGAAGCCTCATGCATAGAGACAATACCATCCTGGAACGCGATCAATTGCAAAGTACTCAGGCCAAGCAAAATTATTCACATAATTCAGACAGAAGATCCGAGAATTCTCCAAAAATACAAGTTTCTGAATGTGAACCAAGTCCTTCAGCGCCAACACAACATCAAGAGGCTGCTTCCCTAGATCCTAGAAGCCTACAACAAGCTTCTGAACTGAGACCAACTACTTCAGTGCCAAGACAACATCAACAGGTTGCTTCTCAAGATCCTGAAAGCGCTTGGTCCGCTCATGTTGATAAATATAAAAAAATTCTACGTGCTATCTACTTCCAAATTTGCATTGGTCTCTTTGTAAGCTTTGCCATCATCGTGCTTGTGGGTTGCTGGACCATTCCCTGTAGGGAAGCTCACCATGGCAAGTACCCCAGTGAGAAGTGCATTAGGCTTTGTGAAGGCACCGAGTGTATAAGCATCTGCACCCAATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.81

Weight (kDa)

8.31

Isoelectric Point (pI)

60.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 728
AccBSI CCGCTC 1 cut(s) 560
AccII CGCG 1 cut(s) 315
AciI CCGC 2 cut(s) 227, 558
AclWI GGATC 3 cut(s) 366, 452, 533
AcoI YGGCCR 1 cut(s) 228
AcsI RAATTY 3 cut(s) 379, 582, 606
AcuI CTGAAG 2 cut(s) 405, 486
AdeI CACNNNGTG 1 cut(s) 735
AfaI GTAC 2 cut(s) 331, 695
AfeI AGCGCT 1 cut(s) 550
AgsI TTSAA 2 cut(s) 110, 152
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 4 cut(s) 64, 479, 630, 680
AluI AGCT 4 cut(s) 64, 479, 630, 680
Alw26I GTCTC 4 cut(s) 218, 288, 484, 623
AlwI GGATC 3 cut(s) 366, 452, 533
Aor51HI AGCGCT 1 cut(s) 550
AoxI GGCC 2 cut(s) 228, 336
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 3 cut(s) 379, 582, 606
AspLEI GCGC 2 cut(s) 427, 551
AspS9I GGNCC 2 cut(s) 555, 660
AsuHPI GGTGA 2 cut(s) 115, 674
AvaII GGWCC 2 cut(s) 555, 660
BanI GGYRCC 1 cut(s) 728
BarI GAAGNNNNNNTAC 2 cut(s) 90, 122
BbvI GCAGC 1 cut(s) 433
BccI CCATC 2 cut(s) 311, 644
BciT130I CCWGG 1 cut(s) 308
BcoDI GTCTC 4 cut(s) 218, 288, 484, 623
BfaI CTAG 3 cut(s) 455, 462, 760
BfmI CTRYAG 1 cut(s) 670
BfoI RGCGCY 2 cut(s) 428, 552
BisI GCNGC 2 cut(s) 228, 447
BlsI GCNGC 2 cut(s) 229, 448
BmcAI AGTACT 1 cut(s) 331
Bme1390I CCNGG 1 cut(s) 308
Bme18I GGWCC 2 cut(s) 555, 660
BmgT120I GGNCC 2 cut(s) 555, 660
BmiI GGNNCC 1 cut(s) 730
BmrFI CCNGG 1 cut(s) 308
BmrI ACTGGG 1 cut(s) 693
BmsI GCATC 2 cut(s) 176, 753
BmuI ACTGGG 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 519
BsaAI YACGTR 1 cut(s) 590
BsaI GGTCTC 2 cut(s) 484, 623
BsaJI CCNNGG 1 cut(s) 685
Bse1I ACTGG 2 cut(s) 114, 699
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 685
BseGI GGATG 1 cut(s) 303
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 3 cut(s) 204, 347, 479
BseNI ACTGG 2 cut(s) 114, 699
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 433
BsgI GTGCAG 1 cut(s) 733
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 2 cut(s) 230, 338
BshNI GGYRCC 1 cut(s) 728
BsmAI GTCTC 4 cut(s) 218, 288, 484, 623
BsnI GGCC 2 cut(s) 230, 338
Bso31I GGTCTC 2 cut(s) 484, 623
Bsp143I GATC 6 cut(s) 91, 193, 316, 371, 457, 538
Bsp19I CCATGG 1 cut(s) 685
BspACI CCGC 2 cut(s) 227, 558
BspANI GGCC 2 cut(s) 230, 338
BspCNI CTCAG 3 cut(s) 203, 346, 480
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 730
BspPI GGATC 3 cut(s) 366, 452, 533
BspT107I GGYRCC 1 cut(s) 728
BspTNI GGTCTC 2 cut(s) 484, 623
BsrBI CCGCTC 1 cut(s) 560
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 2 cut(s) 114, 699
BssECI CCNNGG 1 cut(s) 685
BssMI GATC 6 cut(s) 91, 193, 316, 371, 457, 538
BssT1I CCWWGG 1 cut(s) 685
Bst2UI CCWGG 1 cut(s) 308
BstBAI YACGTR 1 cut(s) 590
BstDEI CTNAG 3 cut(s) 190, 333, 488
BstDSI CCRYGG 1 cut(s) 685
BstF5I GGATG 1 cut(s) 303
BstFNI CGCG 1 cut(s) 315
BstH2I RGCGCY 2 cut(s) 428, 552
BstHHI GCGC 2 cut(s) 427, 551
BstKTI GATC 6 cut(s) 94, 196, 319, 374, 460, 541
BstMAI GTCTC 4 cut(s) 218, 288, 484, 623
BstMBI GATC 6 cut(s) 91, 193, 316, 371, 457, 538
BstMWI GCNNNNNNNGC 1 cut(s) 557
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 306
BstSFI CTRYAG 1 cut(s) 670
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 433
BstX2I RGATCY 3 cut(s) 371, 457, 538
BstYI RGATCY 3 cut(s) 371, 457, 538
BsuRI GGCC 2 cut(s) 230, 338
BtgI CCRYGG 1 cut(s) 685
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 121, 510, 706
CfoI GCGC 2 cut(s) 427, 551
Cfr13I GGNCC 2 cut(s) 555, 660
Csp6I GTAC 2 cut(s) 330, 694
CspCI CAANNNNNGTGG 2 cut(s) 9, 44
CviAII CATG 4 cut(s) 15, 286, 563, 686
CviQI GTAC 2 cut(s) 330, 694
DdeI CTNAG 3 cut(s) 190, 333, 488
DpnI GATC 6 cut(s) 93, 195, 318, 373, 459, 540
DpnII GATC 6 cut(s) 91, 193, 316, 371, 457, 538
DraIII CACNNNGTG 1 cut(s) 735
EaeI YGGCCR 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 685
Eco31I GGTCTC 2 cut(s) 484, 623
Eco47I GGWCC 2 cut(s) 555, 660
Eco47III AGCGCT 1 cut(s) 550
Eco57I CTGAAG 2 cut(s) 405, 486
EcoRI GAATTC 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 685
EcoT22I ATGCAT 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 685
FaeI CATG 4 cut(s) 18, 289, 566, 689
FatI CATG 4 cut(s) 14, 285, 562, 685
Fnu4HI GCNGC 2 cut(s) 228, 447
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 228, 447
FspBI CTAG 3 cut(s) 455, 462, 760
GlaI GCGC 2 cut(s) 426, 550
GluI GCNGC 2 cut(s) 228, 447
HaeII RGCGCY 2 cut(s) 428, 552
HaeIII GGCC 2 cut(s) 230, 338
HhaI GCGC 2 cut(s) 427, 551
Hin1II CATG 4 cut(s) 18, 289, 566, 689
Hin6I GCGC 2 cut(s) 425, 549
HinP1I GCGC 2 cut(s) 425, 549
HindIII AAGCTT 2 cut(s) 477, 628
HphI GGTGA 2 cut(s) 115, 674
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 5 cut(s) 193, 364, 376, 403, 484
Hpy188III TCNNGA 3 cut(s) 440, 536, 542
Hpy8I GTNNAC 1 cut(s) 410
HpyAV CCTTC 3 cut(s) 130, 429, 719
HpyCH4IV ACGT 1 cut(s) 589
HpyCH4V TGCA 6 cut(s) 131, 289, 325, 612, 711, 750
HpyF10VI GCNNNNNNNGC 1 cut(s) 557
HpyF3I CTNAG 3 cut(s) 190, 333, 488
HpySE526I ACGT 1 cut(s) 589
Hsp92II CATG 4 cut(s) 18, 289, 566, 689
HspAI GCGC 2 cut(s) 425, 549
Kzo9I GATC 6 cut(s) 91, 193, 316, 371, 457, 538
LmnI GCTCC 1 cut(s) 61
Lsp1109I GCAGC 1 cut(s) 433
LweI GCATC 2 cut(s) 176, 753
MaeI CTAG 3 cut(s) 455, 462, 760
MaeII ACGT 1 cut(s) 589
MalI GATC 6 cut(s) 93, 195, 318, 373, 459, 540
MbiI CCGCTC 1 cut(s) 560
MboI GATC 6 cut(s) 91, 193, 316, 371, 457, 538
MboII GAAGA 2 cut(s) 98, 381
MfeI CAATTG 1 cut(s) 320
MflI RGATCY 3 cut(s) 371, 457, 538
MluCI AATT 8 cut(s) 258, 268, 320, 346, 358, 379, 582, 606
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 4 cut(s) 52, 257, 293, 436
Mph1103I ATGCAT 1 cut(s) 291
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 641
MspR9I CCNGG 1 cut(s) 308
MunI CAATTG 1 cut(s) 320
MvaI CCWGG 1 cut(s) 308
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 557
NcoI CCATGG 1 cut(s) 685
NdeII GATC 6 cut(s) 91, 193, 316, 371, 457, 538
NlaIII CATG 4 cut(s) 18, 289, 566, 689
NlaIV GGNNCC 1 cut(s) 730
NsiI ATGCAT 1 cut(s) 291
PfoI TCCNGGA 1 cut(s) 306
PkrI GCNGC 2 cut(s) 229, 448
Ppu21I YACGTR 1 cut(s) 590
PsiI TTATAA 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 306
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 730
PspPI GGNCC 2 cut(s) 555, 660
PsuI RGATCY 3 cut(s) 371, 457, 538
RsaI GTAC 2 cut(s) 331, 695
RsaNI GTAC 2 cut(s) 330, 694
RseI CAYNNNNRTG 1 cut(s) 641
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 2 cut(s) 228, 447
Sau3AI GATC 6 cut(s) 91, 193, 316, 371, 457, 538
Sau96I GGNCC 2 cut(s) 555, 660
ScaI AGTACT 1 cut(s) 331
ScrFI CCNGG 1 cut(s) 308
SetI ASST 6 cut(s) 66, 481, 528, 592, 632, 682
SfaNI GCATC 2 cut(s) 176, 753
SfcI CTRYAG 1 cut(s) 670
SinI GGWCC 2 cut(s) 555, 660
SmiMI CAYNNNNRTG 1 cut(s) 641
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
Sse9I AATT 8 cut(s) 258, 268, 320, 346, 358, 379, 582, 606
SsiI CCGC 2 cut(s) 227, 558
SspMI CTAG 3 cut(s) 455, 462, 760
StyD4I CCNGG 1 cut(s) 306
StyI CCWWGG 1 cut(s) 685
TaiI ACGT 1 cut(s) 592
TasI AATT 8 cut(s) 258, 268, 320, 346, 358, 379, 582, 606
TatI WGTACW 1 cut(s) 329
TauI GCSGC 1 cut(s) 230
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 3 cut(s) 121, 510, 706
TseI GCWGC 1 cut(s) 446
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 3 cut(s) 121, 510, 706
VpaK11BI GGWCC 2 cut(s) 555, 660
XapI RAATTY 3 cut(s) 379, 582, 606
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XspI CTAG 3 cut(s) 455, 462, 760
ZrmI AGTACT 1 cut(s) 331
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.