Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016406

Physical Location & Seq

Genomic Coordinates Reverse (-)

39187729 .. 39188457

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G470600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACTAACCATCCATGTCCACAAAACGGTGACAAAGAAAAAAGGGAGAACATGGAGAGAAGAAAAGAGGAGCTACAAGCTACAATTGAGAAGCAGGATGATCGTGTAAACCATCTTCAAACGAGTGCCTTCAACCTTGCAAACTACTACATTGTCTTCCAAGGAGTTATTTTGGGGGCTATCGTCAACGCCACCACAGCCCTCCGATGCTCAGATCGTTGGTTCCTTTTCAGCCTCTCTCTAATAGCAGCCATACTCAATCTGGTTTCATTGCTTGTAATTGGAGGCAATTATAAAAGAAGCGTCATGCAGAGACACCATACCAAGAGTGCGCACATTAAATTGGAAAACGATCTGGGGAAGCTAGAAACTTCAGCTTCAGATCACGGGCTCAAAACTAATATATTATCGTACTGGGAGTCGACAAAAATTGAAGCTTCAGGGCATGTTACTTGTCAAGATCCTACAACTGTTGAAATTAAGGATGAACCGGAACAAAGGCAGATCAGGAAGCGGGTTGTGCCGGTTGATAATCTTCACAAACAGCTGCGTGATTTCTACTTTCTACTTTGCATGGGTCTCTTTGTATCCTTTGCCGTCATCGTGGTTGTGGGTTGCTGGACCATTCCTTGCAAGGAAGCTTTTCAATGCATACCACCCGTATCCAGCACTGAGAAATGCATTAGGGTTTGTGAAGGTGCCAAGTGTATGAGCATGTGCACCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

27.43

Weight (kDa)

7.99

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016406)

Species	Orthologous Gene IDs
malus_domestica	MD15G1111300.v1.1 MD15G1112200.v1.1
prunus_persica	Prupe.1G469500_v2.0.a1 Prupe.1G469600_v2.0.a1 Prupe.1G469800_v2.0.a1 Prupe.1G470100_v2.0.a1 Prupe.1G470300_v2.0.a1 Prupe.1G470400_v2.0.a1 Prupe.1G470500_v2.0.a1 Prupe.1G470600_v2.0.a1
pyrus_communis	pycom15g10320
rosa_laevigata	RLG00000003048
rosa_roxburghii	Rroxscaffold_3G00248420
rosa_rugosa	Rorug05G0539700 Rorug05G0540800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
Acc16I	TGCGCA	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	698
AccI	GTMKAC	1 cut(s)	422
AciI	CCGC	1 cut(s)	514
AclWI	GGATC	1 cut(s)	455
AcuI	CTGAAG	3 cut(s)	357, 363, 423
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	5 cut(s)	119, 133, 434, 476, 647
AluBI	AGCT	7 cut(s)	73, 80, 364, 377, 437, 547, 641
AluI	AGCT	7 cut(s)	73, 80, 364, 377, 437, 547, 641
Alw21I	GWGCWC	1 cut(s)	722
Alw26I	GTCTC	2 cut(s)	307, 584
Alw44I	GTGCAC	1 cut(s)	718
AlwI	GGATC	1 cut(s)	455
ApaLI	GTGCAC	1 cut(s)	718
ApeKI	GCWGC	2 cut(s)	248, 547
Asp700I	GAANNNNTTC	1 cut(s)	642
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	621
AsuHPI	GGTGA	1 cut(s)	41
AvaII	GGWCC	1 cut(s)	621
BaeGI	GKGCMC	1 cut(s)	722
BanI	GGYRCC	1 cut(s)	698
BanII	GRGCYC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	99, 131
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	722
BbvI	GCAGC	2 cut(s)	260, 534
BccI	CCATC	2 cut(s)	18, 120
BceAI	ACGGC	1 cut(s)	581
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciVI	GTATCC	2 cut(s)	598, 673
BcoDI	GTCTC	2 cut(s)	307, 584
BfaI	CTAG	1 cut(s)	365
BfuI	GTATCC	2 cut(s)	598, 673
BisI	GCNGC	2 cut(s)	249, 548
BlsI	GCNGC	2 cut(s)	250, 549
Bme18I	GGWCC	1 cut(s)	621
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	2 cut(s)	224, 700
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	1 cut(s)	197
BmuI	ACTGGG	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	1 cut(s)	490
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	419
Bse3DI	GCAATG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	3 cut(s)	10, 103, 490
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	2 cut(s)	225, 663
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	722
BseXI	GCAGC	2 cut(s)	260, 534
BshNI	GGYRCC	1 cut(s)	698
BsiHKAI	GWGCWC	1 cut(s)	722
BsiSI	CCGG	2 cut(s)	491, 524
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	2 cut(s)	307, 584
Bso31I	GGTCTC	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	393, 722
Bsp143I	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
BspACI	CCGC	1 cut(s)	514
BspCNI	CTCAG	2 cut(s)	224, 664
BspLI	GGNNCC	2 cut(s)	224, 700
BspPI	GGATC	1 cut(s)	455
BspT107I	GGYRCC	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	584
BsrDI	GCAATG	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	523
BsrI	ACTGG	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
BssT1I	CCWWGG	1 cut(s)	160
Bst4CI	ACNGT	2 cut(s)	29, 472
BstDEI	CTNAG	2 cut(s)	211, 672
BstF5I	GGATG	3 cut(s)	10, 103, 490
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	6 cut(s)	103, 217, 355, 385, 463, 507
BstMAI	GTCTC	2 cut(s)	307, 584
BstMBI	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 520
BstNSI	RCATGY	2 cut(s)	449, 718
BstSLI	GKGCMC	1 cut(s)	722
BstV1I	GCAGC	2 cut(s)	260, 534
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuI	GTATCC	2 cut(s)	598, 673
BtsCI	GGATG	3 cut(s)	10, 103, 490
BtsIMutI	CAGTG	1 cut(s)	669
CfoI	GCGC	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	1 cut(s)	621
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	6 cut(s)	15, 52, 307, 446, 574, 715
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	2 cut(s)	211, 672
DpnI	GATC	6 cut(s)	102, 216, 354, 384, 462, 506
DpnII	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
Eco130I	CCWWGG	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	621
Eco57I	CTGAAG	3 cut(s)	357, 363, 423
EcoT14I	CCWWGG	1 cut(s)	160
EcoT22I	ATGCAT	2 cut(s)	653, 683
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	6 cut(s)	18, 55, 310, 449, 577, 718
FatI	CATG	6 cut(s)	14, 51, 306, 445, 573, 714
FauI	CCCGC	1 cut(s)	507
FblI	GTMKAC	1 cut(s)	422
Fnu4HI	GCNGC	2 cut(s)	249, 548
FokI	GGATG	2 cut(s)	110, 497
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	2 cut(s)	249, 548
FspAI	RTGCGCAY	1 cut(s)	333
FspBI	CTAG	1 cut(s)	365
FspI	TGCGCA	1 cut(s)	333
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	2 cut(s)	249, 548
HapII	CCGG	2 cut(s)	491, 524
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	1 cut(s)	334
Hin1II	CATG	6 cut(s)	18, 55, 310, 449, 577, 718
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HincII	GTYRAC	2 cut(s)	187, 423
HindII	GTYRAC	2 cut(s)	187, 423
HindIII	AAGCTT	2 cut(s)	435, 639
HinfI	GANTC	1 cut(s)	419
HpaII	CCGG	2 cut(s)	491, 524
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	5 cut(s)	20, 109, 187, 423, 720
Hpy188I	TCNGA	3 cut(s)	206, 214, 382
Hpy188III	TCNNGA	2 cut(s)	458, 508
Hpy8I	GTNNAC	5 cut(s)	20, 109, 187, 423, 720
HpyAV	CCTTC	2 cut(s)	139, 689
HpyCH4III	ACNGT	2 cut(s)	29, 472
HpyCH4V	TGCA	7 cut(s)	140, 310, 573, 633, 651, 681, 720
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 520
HpyF3I	CTNAG	2 cut(s)	211, 672
Hsp92II	CATG	6 cut(s)	18, 55, 310, 449, 577, 718
HspAI	GCGC	1 cut(s)	332
Kzo9I	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
LmnI	GCTCC	1 cut(s)	70
Lsp1109I	GCAGC	2 cut(s)	260, 534
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	2 cut(s)	29, 448
MalI	GATC	6 cut(s)	102, 216, 354, 384, 462, 506
MboI	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
MboII	GAAGA	4 cut(s)	72, 107, 148, 527
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	2 cut(s)	393, 722
MluCI	AATT	6 cut(s)	84, 279, 289, 341, 429, 477
MlyI	GAGTC	1 cut(s)	428
MnlI	CCTC	4 cut(s)	61, 212, 245, 278
Mph1103I	ATGCAT	2 cut(s)	653, 683
MroXI	GAANNNNTTC	1 cut(s)	642
MseI	TTAA	2 cut(s)	339, 480
MspA1I	CMGCKG	1 cut(s)	547
MspI	CCGG	2 cut(s)	491, 524
MunI	CAATTG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	197, 520
NdeII	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
NlaIII	CATG	6 cut(s)	18, 55, 310, 449, 577, 718
NlaIV	GGNNCC	2 cut(s)	224, 700
NmuCI	GTSAC	1 cut(s)	29
NsbI	TGCGCA	1 cut(s)	333
NsiI	ATGCAT	2 cut(s)	653, 683
NspI	RCATGY	2 cut(s)	449, 718
PdmI	GAANNNNTTC	1 cut(s)	642
PkrI	GCNGC	2 cut(s)	250, 549
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PsiI	TTATAA	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	224, 700
PspPI	GGNCC	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	547
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SalI	GTCGAC	1 cut(s)	421
SaqAI	TTAA	2 cut(s)	339, 480
SatI	GCNGC	2 cut(s)	249, 548
Sau3AI	GATC	6 cut(s)	100, 214, 352, 382, 460, 504
Sau96I	GGNCC	1 cut(s)	621
SchI	GAGTC	1 cut(s)	428
SduI	GDGCHC	2 cut(s)	393, 722
SetI	ASST	9 cut(s)	75, 82, 138, 366, 379, 439, 549, 643, 700
SfaNI	GCATC	1 cut(s)	197
SinI	GGWCC	1 cut(s)	621
Sse9I	AATT	6 cut(s)	84, 279, 289, 341, 429, 477
SsiI	CCGC	1 cut(s)	514
SspMI	CTAG	1 cut(s)	365
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	2 cut(s)	29, 472
TaqI	TCGA	1 cut(s)	422
TasI	AATT	6 cut(s)	84, 279, 289, 341, 429, 477
Tru1I	TTAA	2 cut(s)	339, 480
Tru9I	TTAA	2 cut(s)	339, 480
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	1 cut(s)	29
TseI	GCWGC	2 cut(s)	248, 547
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	2 cut(s)	258, 501
TspRI	CASTG	1 cut(s)	676
VneI	GTGCAC	1 cut(s)	718
VpaK11BI	GGWCC	1 cut(s)	621
XceI	RCATGY	2 cut(s)	449, 718
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	422
XmnI	GAANNNNTTC	1 cut(s)	642
XspI	CTAG	1 cut(s)	365
Zsp2I	ATGCAT	2 cut(s)	653, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.