Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016406

Physical Location & Seq

Genomic Coordinates Reverse (-)

39121397 .. 39122129

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G469500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGACACCGATCCATGTCCGCCAAATGGTGACAAAGAAAAGAAAGAAAACATGGATAAAAGAAAACAGGAGCTGCAAACTACAATTGAGAAACAGGATGATCAAGTAAATCAACTTCAAACGAGCGCCTTCAACCTTGCAAACTACTACTTCGTCTTTCAAGGACTTATTTTGGGGCCTATCGTCACTGCGACCACAGCGCTCAGATGCTCAGATCGCTGGTTCCTTTTCAGCCTCTCTCTGATAGCAGCCATACTCAACTTGGTTTCATTGCTTGTAGTTGGAAGCAAATATAAAAAAAGCGTTATGCAGAGACACCAAACCAAGAGTGAGCTCATTGAATTGGAAAGTGATCTGAGCAAGCTAGAAACTTCACCTTCAGATCAACGGCTGAAGGCTAAAATATTATCGTACTGGGATACGACGAAAATTCAACATCCTATGACTGTAGGAAATAAGCATGAAACGGAACTAAGGCGGAGGGTCATGCCTGATGTTACAAATCATCTACGTGATTTTTACTATGTAATTTGTATGGGTCTGTTTATAAGCTTTGCCGTCATCGTGATTGTGGGTTGCTGGACCATTCCTTGCAAGAAAGCTCTTCAATGCACACCCCCGATATCCGACGTCAACACTGGTAAATGCATTAGGGTTTGTGAAGGCGCCAAGTGTATGAGCATCTGCACCCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

26.39

Weight (kDa)

8.63

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016406)

Species	Orthologous Gene IDs
malus_domestica	MD15G1111300.v1.1 MD15G1112200.v1.1
prunus_persica	Prupe.1G469500_v2.0.a1 Prupe.1G469600_v2.0.a1 Prupe.1G469800_v2.0.a1 Prupe.1G470100_v2.0.a1 Prupe.1G470300_v2.0.a1 Prupe.1G470400_v2.0.a1 Prupe.1G470500_v2.0.a1 Prupe.1G470600_v2.0.a1
pyrus_communis	pycom15g10320
rosa_laevigata	RLG00000003048
rosa_roxburghii	Rroxscaffold_3G00248420
rosa_rugosa	Rorug05G0539700 Rorug05G0540800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	548
AatII	GACGTC	1 cut(s)	633
AccB1I	GGYRCC	1 cut(s)	665
AciI	CCGC	2 cut(s)	20, 478
AclWI	GGATC	1 cut(s)	5
AcsI	RAATTY	1 cut(s)	429
AcuI	CTGAAG	2 cut(s)	363, 413
AcyI	GRCGYC	2 cut(s)	630, 666
AfaI	GTAC	1 cut(s)	413
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	6 cut(s)	119, 133, 161, 341, 434, 608
AluBI	AGCT	5 cut(s)	73, 334, 364, 552, 602
AluI	AGCT	5 cut(s)	73, 334, 364, 552, 602
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	5
AlwNI	CAGNNNCTG	1 cut(s)	73
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	2 cut(s)	73, 248
ApoI	RAATTY	1 cut(s)	429
AspLEI	GCGC	3 cut(s)	128, 202, 668
AspS9I	GGNCC	2 cut(s)	176, 582
AsuHPI	GGTGA	2 cut(s)	41, 366
AvaII	GGWCC	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	665
BanII	GRGCYC	1 cut(s)	336
BarI	GAAGNNNNNNTAC	2 cut(s)	99, 131
Bbv12I	GWGCWC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	60, 260
BceAI	ACGGC	2 cut(s)	404, 542
BciVI	GTATCC	1 cut(s)	412
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	365, 697
BfmI	CTRYAG	1 cut(s)	447
BfoI	RGCGCY	3 cut(s)	129, 203, 669
BfuI	GTATCC	1 cut(s)	412
BisI	GCNGC	2 cut(s)	74, 249
BlsI	GCNGC	2 cut(s)	75, 250
Bme18I	GGWCC	1 cut(s)	582
BmgT120I	GGNCC	2 cut(s)	176, 582
BmiI	GGNNCC	3 cut(s)	177, 224, 667
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	2 cut(s)	197, 690
BmuI	ACTGGG	1 cut(s)	424
BsaAI	YACGTR	1 cut(s)	512
BsaHI	GRCGYC	2 cut(s)	630, 666
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	419, 643
Bse3DI	GCAATG	1 cut(s)	269
BseGI	GGATG	2 cut(s)	103, 436
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	3 cut(s)	217, 225, 347
BseNI	ACTGG	2 cut(s)	419, 643
BseXI	GCAGC	2 cut(s)	60, 260
BsgI	GTGCAG	1 cut(s)	670
BshFI	GGCC	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	665
BsiHKAI	GWGCWC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	5 cut(s)	10, 100, 214, 352, 382
BspACI	CCGC	2 cut(s)	20, 478
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	3 cut(s)	216, 224, 348
BspLI	GGNNCC	3 cut(s)	177, 224, 667
BspPI	GGATC	1 cut(s)	5
BspQI	GCTCTTC	1 cut(s)	609
BspT107I	GGYRCC	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	419, 643
BssMI	GATC	5 cut(s)	10, 100, 214, 352, 382
BssNI	GRCGYC	2 cut(s)	630, 666
Bst4CI	ACNGT	1 cut(s)	448
Bst6I	CTCTTC	1 cut(s)	609
BstACI	GRCGYC	2 cut(s)	630, 666
BstBAI	YACGTR	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	4 cut(s)	203, 211, 356, 473
BstF5I	GGATG	2 cut(s)	103, 436
BstH2I	RGCGCY	3 cut(s)	129, 203, 669
BstHHI	GCGC	3 cut(s)	128, 202, 668
BstKTI	GATC	5 cut(s)	13, 103, 217, 355, 385
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	5 cut(s)	10, 100, 214, 352, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 216
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	60, 260
BsuI	GTATCC	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	103, 436
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	2 cut(s)	186, 636
Cac8I	GCNNGC	1 cut(s)	362
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	3 cut(s)	128, 202, 668
Cfr13I	GGNCC	2 cut(s)	176, 582
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	4 cut(s)	15, 52, 461, 487
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	4 cut(s)	203, 211, 356, 473
DinI	GGCGCC	1 cut(s)	667
DpnI	GATC	5 cut(s)	12, 102, 216, 354, 384
DpnII	GATC	5 cut(s)	10, 100, 214, 352, 382
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
EciI	GGCGGA	2 cut(s)	9, 493
Ecl136II	GAGCTC	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	336
Eco32I	GATATC	1 cut(s)	624
Eco47I	GGWCC	1 cut(s)	582
Eco47III	AGCGCT	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	2 cut(s)	363, 413
EcoICRI	GAGCTC	1 cut(s)	334
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRV	GATATC	1 cut(s)	624
EcoT22I	ATGCAT	1 cut(s)	650
EcoT38I	GRGCYC	1 cut(s)	336
EgeI	GGCGCC	1 cut(s)	667
EheI	GGCGCC	1 cut(s)	667
FaeI	CATG	4 cut(s)	18, 55, 464, 490
FatI	CATG	4 cut(s)	14, 51, 460, 486
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	74, 249
FokI	GGATG	2 cut(s)	110, 423
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	2 cut(s)	74, 249
FspBI	CTAG	2 cut(s)	365, 697
GlaI	GCGC	3 cut(s)	127, 201, 667
GluI	GCNGC	2 cut(s)	74, 249
HaeII	RGCGCY	3 cut(s)	129, 203, 669
HaeIII	GGCC	1 cut(s)	178
HhaI	GCGC	3 cut(s)	128, 202, 668
Hin1I	GRCGYC	2 cut(s)	630, 666
Hin1II	CATG	4 cut(s)	18, 55, 464, 490
Hin6I	GCGC	3 cut(s)	126, 200, 666
HinP1I	GCGC	3 cut(s)	126, 200, 666
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HindIII	AAGCTT	1 cut(s)	550
HphI	GGTGA	2 cut(s)	41, 366
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	6 cut(s)	206, 214, 243, 357, 382, 628
Hpy188III	TCNNGA	1 cut(s)	565
Hpy8I	GTNNAC	1 cut(s)	634
Hpy99I	CGWCG	2 cut(s)	427, 632
HpyAV	CCTTC	4 cut(s)	139, 387, 388, 656
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	2 cut(s)	511, 630
HpyCH4V	TGCA	7 cut(s)	76, 140, 310, 594, 612, 648, 687
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 216
HpyF3I	CTNAG	4 cut(s)	203, 211, 356, 473
HpySE526I	ACGT	2 cut(s)	511, 630
Hsp92I	GRCGYC	2 cut(s)	630, 666
Hsp92II	CATG	4 cut(s)	18, 55, 464, 490
HspAI	GCGC	3 cut(s)	126, 200, 666
KasI	GGCGCC	1 cut(s)	665
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	5 cut(s)	10, 100, 214, 352, 382
LguI	GCTCTTC	1 cut(s)	609
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	7 cut(s)	53, 80, 205, 400, 504, 565, 624
Lsp1109I	GCAGC	2 cut(s)	60, 260
LweI	GCATC	2 cut(s)	197, 690
MaeI	CTAG	2 cut(s)	365, 697
MaeII	ACGT	2 cut(s)	511, 630
MaeIII	GTNAC	3 cut(s)	29, 184, 496
MalI	GATC	5 cut(s)	12, 102, 216, 354, 384
MboI	GATC	5 cut(s)	10, 100, 214, 352, 382
MboII	GAAGA	1 cut(s)	596
MfeI	CAATTG	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	5 cut(s)	84, 341, 429, 528, 692
Mly113I	GGCGCC	1 cut(s)	666
MmeI	TCCRAC	2 cut(s)	262, 651
MnlI	CCTC	2 cut(s)	245, 474
Mph1103I	ATGCAT	1 cut(s)	650
MslI	CAYNNNNRTG	1 cut(s)	510
MunI	CAATTG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	197, 216
NarI	GGCGCC	1 cut(s)	666
NdeII	GATC	5 cut(s)	10, 100, 214, 352, 382
NlaIII	CATG	4 cut(s)	18, 55, 464, 490
NlaIV	GGNNCC	3 cut(s)	177, 224, 667
NmuCI	GTSAC	2 cut(s)	29, 184
NsiI	ATGCAT	1 cut(s)	650
PciSI	GCTCTTC	1 cut(s)	609
PkrI	GCNGC	2 cut(s)	75, 250
PluTI	GGCGCC	1 cut(s)	669
Ppu21I	YACGTR	1 cut(s)	512
PsiI	TTATAA	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	336
PspN4I	GGNNCC	3 cut(s)	177, 224, 667
PspPI	GGNCC	2 cut(s)	176, 582
PstNI	CAGNNNCTG	1 cut(s)	73
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	510
SacI	GAGCTC	1 cut(s)	336
SapI	GCTCTTC	1 cut(s)	609
SatI	GCNGC	2 cut(s)	74, 249
Sau3AI	GATC	5 cut(s)	10, 100, 214, 352, 382
Sau96I	GGNCC	2 cut(s)	176, 582
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	9 cut(s)	75, 138, 336, 366, 379, 514, 554, 604, 633
SfaNI	GCATC	2 cut(s)	197, 690
SfcI	CTRYAG	1 cut(s)	447
SfoI	GGCGCC	1 cut(s)	667
SinI	GGWCC	1 cut(s)	582
SmiMI	CAYNNNNRTG	1 cut(s)	510
Sse9I	AATT	5 cut(s)	84, 341, 429, 528, 692
SsiI	CCGC	2 cut(s)	20, 478
SspDI	GGCGCC	1 cut(s)	665
SspI	AATATT	1 cut(s)	405
SspMI	CTAG	2 cut(s)	365, 697
SstI	GAGCTC	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	2 cut(s)	514, 633
TasI	AATT	5 cut(s)	84, 341, 429, 528, 692
TscAI	CASTG	2 cut(s)	193, 643
TseFI	GTSAC	2 cut(s)	29, 184
TseI	GCWGC	2 cut(s)	73, 248
Tsp45I	GTSAC	2 cut(s)	29, 184
TspDTI	ATGAA	2 cut(s)	258, 477
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	2 cut(s)	193, 643
VpaK11BI	GGWCC	1 cut(s)	582
XapI	RAATTY	1 cut(s)	429
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XspI	CTAG	2 cut(s)	365, 697
ZraI	GACGTC	1 cut(s)	631
Zsp2I	ATGCAT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.