Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008755

Physical Location & Seq

Genomic Coordinates Reverse (-)

10535770 .. 10538152

Gene Structure 2383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1142400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCTGCTGCTTGGGCTTCAACACGGTGTTTCAACTCTCGCCTCCTCCCACCGCCGGATACTTGTCGTTCCCACGGAGGCAGAGGCGGCAGCAGCAGTCAACGCCTTCTCCTGTCGTCTCAGATTCCCAAATCCCTCTCTCTTTCTTCGTCGCCATCTTCTTCTTCGTTTTCCATAGGAGGAGGCGGAATTGAGAGGAAGGAGCGTTCGTCTTTTGCTCAGACAGCGGCTGTTCGCCATCTCGTGGGTTCCGTCACCAAAACTCAGGGCCTCCGTTTCGCAGTGGTTGTGGCGCGGTTCAATGAGTTTATAACAAAGCAGCTGTTAGAGGGAGCTCTGACCACTTTCAGCAACTACTCAATTCAAGACGAGGATGTTGACGTTGTGTGGGTTCCTGGTAGTTTTGAAATCGGTGTAACTGCACAGAGGCTTGCAAGTTTGGGAAAATATCATGCAATTCTATGCGTCGGAGCTGTGATTAGAGGCGATACAACCCACTATGATGCAGTTGCTAATTCAGCAGCATCTGGAGTACTTTCAGCTGGATTACAATCAGGAGTGCCGTGCATATTTGGTGTCCTAACTTGTGATAATATGGAGCAGGCTATAAATCGAGCGGGTGGTAAATCTGGAAATAAGGGTGCAGAGACTGCTATGACAGCTATTGAGATGGCATCTTTGTTTGAGCACCAACTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Autophagy_act_C DMRL_synthase

Protein Analysis

234

Amino Acids

24.44

Weight (kDa)

8.9

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DMRL_synthase	PF00885	90 - 228	3.1e-52	6,7-dimethyl-8-ribityllumazine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44050
fragaria_vesca	FvH4_1g00110 FvH4_2g10600
malus_domestica	MD15G1142400.v1.1
prunus_persica	Prupe.7G270800_v2.0.a1 Prupe.7G270800_v2.0.a1
pyrus_communis	pycom15g12850
rosa_chinensis	RchiOBHm_Chr2g0084411 RchiOBHm_Chr7g0214271 RchiOBHm_Chr7g0227511
rosa_laevigata	RLG00000015614
rosa_multiflora	Rmu_sc0028043.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032080 Rroxscaffold_2G00156120 Rroxscaffold_6G00389680 Rroxscaffold_7G00200880 Rroxscaffold_7G00200890
rosa_samantha	Rh2DG001600 Rh7AG437800
rosa_wichuraiana	Rw2G000130 Rw4G009510 Rw7G031050 Rw7G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
AccB7I	CCANNNNNTGG	1 cut(s)	244
AccBSI	CCGCTC	1 cut(s)	617
AccII	CGCG	1 cut(s)	295
AciI	CCGC	6 cut(s)	53, 87, 186, 227, 295, 617
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	2 cut(s)	55, 244
AgsI	TTSAA	5 cut(s)	21, 34, 301, 365, 407
AjnI	CCWGG	1 cut(s)	394
AloI	GAACNNNNNNTCC	2 cut(s)	190, 222
AluBI	AGCT	5 cut(s)	322, 335, 473, 542, 662
AluI	AGCT	5 cut(s)	322, 335, 473, 542, 662
Alw21I	GWGCWC	2 cut(s)	337, 690
Alw26I	GTCTC	2 cut(s)	123, 641
AlwNI	CAGNNNCTG	3 cut(s)	230, 527, 650
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	6 cut(s)	5, 8, 90, 93, 319, 521
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	242
Bbv12I	GWGCWC	2 cut(s)	337, 690
BbvI	GCAGC	4 cut(s)	102, 105, 331, 533
BccI	CCATC	3 cut(s)	163, 246, 664
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	396
BciVI	GTATCC	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	123, 641
BfuI	GTATCC	1 cut(s)	52
BisI	GCNGC	8 cut(s)	6, 9, 88, 91, 94, 228, 320, 522
BlsI	GCNGC	8 cut(s)	7, 10, 89, 92, 95, 229, 321, 523
BmcAI	AGTACT	1 cut(s)	534
Bme1390I	CCNGG	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	2 cut(s)	250, 393
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	3 cut(s)	493, 533, 683
BpmI	CTGGAG	1 cut(s)	549
BsaBI	GATNNNNATC	1 cut(s)	550
BsaJI	CCNNGG	1 cut(s)	73
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 244
Bse8I	GATNNNNATC	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	73
BseGI	GGATG	1 cut(s)	379
BseJI	GATNNNNATC	1 cut(s)	550
BseLI	CCNNNNNNNGG	2 cut(s)	55, 244
BseMII	CTCAG	3 cut(s)	134, 233, 278
BseRI	GAGGAG	2 cut(s)	35, 195
BseXI	GCAGC	4 cut(s)	102, 105, 331, 533
BsgI	GTGCAG	2 cut(s)	405, 663
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	1 cut(s)	270
BsiHKAI	GWGCWC	2 cut(s)	337, 690
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	55, 244
BsmAI	GTCTC	2 cut(s)	123, 641
BsmBI	CGTCTC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	337, 690
BspACI	CCGC	6 cut(s)	53, 87, 186, 227, 295, 617
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	3 cut(s)	133, 232, 277
BspFNI	CGCG	1 cut(s)	295
BspLI	GGNNCC	2 cut(s)	250, 393
BsrBI	CCGCTC	1 cut(s)	617
BssECI	CCNNGG	1 cut(s)	73
BssSI	CACGAG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	27
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstC8I	GCNNGC	2 cut(s)	432, 603
BstDEI	CTNAG	3 cut(s)	120, 219, 264
BstDSI	CCRYGG	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	379
BstFNI	CGCG	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	295
BstMAI	GTCTC	2 cut(s)	123, 641
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 87, 93, 102, 224, 518, 650, 659
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	394
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	4 cut(s)	102, 105, 331, 533
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	379
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	432, 603
CaiI	CAGNNNCTG	3 cut(s)	230, 527, 650
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	268
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	1 cut(s)	452
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	3 cut(s)	120, 219, 264
EciI	GGCGGA	1 cut(s)	201
Ecl136II	GAGCTC	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	335
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	394
EcoT38I	GRGCYC	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	1 cut(s)	455
FaiI	YATR	9 cut(s)	176, 311, 453, 463, 501, 569, 596, 608, 656
FatI	CATG	1 cut(s)	451
FauI	CCCGC	1 cut(s)	610
Fnu4HI	GCNGC	8 cut(s)	6, 9, 88, 91, 94, 228, 320, 522
FokI	GGATG	1 cut(s)	386
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	8 cut(s)	6, 9, 88, 91, 94, 228, 320, 522
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	8 cut(s)	6, 9, 88, 91, 94, 228, 320, 522
GsuI	CTGGAG	1 cut(s)	549
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	1 cut(s)	454
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	1 cut(s)	455
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	2 cut(s)	101, 379
HindII	GTYRAC	2 cut(s)	101, 379
HinfI	GANTC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	2 cut(s)	101, 379
Hpy188I	TCNGA	4 cut(s)	123, 222, 339, 470
Hpy188III	TCNNGA	4 cut(s)	365, 528, 555, 630
Hpy8I	GTNNAC	2 cut(s)	101, 379
Hpy99I	CGWCG	2 cut(s)	154, 470
HpyAV	CCTTC	2 cut(s)	116, 193
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	6 cut(s)	422, 434, 455, 506, 567, 644
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 87, 93, 102, 224, 518, 650, 659
HpyF3I	CTNAG	3 cut(s)	120, 219, 264
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	1 cut(s)	455
HspAI	GCGC	1 cut(s)	293
LmnI	GCTCC	4 cut(s)	202, 332, 470, 598
Lsp1109I	GCAGC	4 cut(s)	102, 105, 331, 533
LweI	GCATC	3 cut(s)	493, 533, 683
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	2 cut(s)	253, 415
MbiI	CCGCTC	1 cut(s)	617
MboII	GAAGA	4 cut(s)	138, 150, 153, 156
MhlI	GDGCHC	2 cut(s)	337, 690
MluCI	AATT	4 cut(s)	189, 360, 456, 514
MmeI	TCCRAC	1 cut(s)	448
MslI	CAYNNNNRTG	1 cut(s)	501
MspA1I	CMGCKG	3 cut(s)	227, 322, 542
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	396
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	8 cut(s)	14, 87, 93, 102, 224, 518, 650, 659
NlaIII	CATG	1 cut(s)	455
NlaIV	GGNNCC	2 cut(s)	250, 393
NmuCI	GTSAC	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	244
PkrI	GCNGC	8 cut(s)	7, 10, 89, 92, 95, 229, 321, 523
PsiI	TTATAA	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	250, 393
PspPI	GGNCC	1 cut(s)	268
PstNI	CAGNNNCTG	3 cut(s)	230, 527, 650
PvuII	CAGCTG	2 cut(s)	322, 542
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
RseI	CAYNNNNRTG	1 cut(s)	501
SacI	GAGCTC	1 cut(s)	337
SatI	GCNGC	8 cut(s)	6, 9, 88, 91, 94, 228, 320, 522
Sau96I	GGNCC	1 cut(s)	268
ScaI	AGTACT	1 cut(s)	534
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	2 cut(s)	337, 690
SetI	ASST	6 cut(s)	324, 337, 384, 475, 544, 664
SfaNI	GCATC	3 cut(s)	493, 533, 683
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	4 cut(s)	189, 360, 456, 514
SsiI	CCGC	6 cut(s)	53, 87, 186, 227, 295, 617
SstI	GAGCTC	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	27
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	1 cut(s)	613
TasI	AATT	4 cut(s)	189, 360, 456, 514
TatI	WGTACW	1 cut(s)	532
TauI	GCSGC	2 cut(s)	90, 230
TfiI	GAWTC	1 cut(s)	124
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	6 cut(s)	5, 8, 90, 93, 319, 521
Tsp45I	GTSAC	1 cut(s)	253
TspGWI	ACGGA	3 cut(s)	90, 241, 263
TspRI	CASTG	1 cut(s)	288
Van91I	CCANNNNNTGG	1 cut(s)	244
ZrmI	AGTACT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.