Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008755

Physical Location & Seq

Genomic Coordinates Reverse (-)

45577853 .. 45587001

Gene Structure 9149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCAGCCCTCCGAAGATCAGCTCTTGTCCGTCACCGGTTGGATGTCGTGGTGTTTATGCGCATTTTCATCTTCGAGTTTGAAGAGTCTGAAACTTCCCCCTTGGGAGATATCTTTGAATCTGAATGGTATCAATGTGTAGAGACATTTGAAATAGACCTGGAAATTATTGATGCTGAGATGCTCTTTCTTTGTGATCTTAATAAAATTGTGTTCTTTTGTGGCAGTGAACGAAAGAAGACCAATGTTAATAGAGGCCATGAGTTCAACAATGAGGGTTTTGGTCCTGGCACAATTATTTTATGTGATCAGGACAAGAGGAGACCTCGTACGAGGAGAGTGCCGATTGATGGCAGCATTAGCGGTATACTTTTGGTGATGTTGTTGTTTGGTGATACCAATCAAAAAGCAAAGGCCAACAAAGGCCTACTTTTAATTAAAGAAAATGGGAATCATGGTGCACCACTCTTCATTGTCGTCCGCTTCCAGCCACTTTCTATTCCCACTACCACTCTCTCTTCCGTCTTTGTCTTCTTCGGTTCAATCATCACCCTCATCTCTCTTTCTTCTTCTTCCAAAGCTGCTGCAATTGTAATTGCAATTCCAACTGCAACTGCAAGTGAGAAAAAGGAGCATTCCTCTTTTGCTCGAACTGCGACTGTTCGGCATACGGTGGGTTCCGTTACCACAGCTCACGGCCTTCGTTTCGCGGTGGTTGTAGCACGGTTTAATGAGATTGTCACAAAGCCACTGCTAGAGGGAGCCTTAACTACTTTCAACAATTATTCTGTTCAAGAAGAGGACATTGATGTGGTATGGGTTCCTGGTAGCTTTGAAATTGGTGTAGTTGCACGAGAGGCTTGGAAGTTCGGGGAGATATCATGCAGTTTTATGCATTGGAGCTGTGATAAGAGGCAGCTTCTTCGTACAGATTTTAAGAAGCAAGTCGATGGGCTTGAGATGCTGCAGATGGCACTTCCTAGAAAGGAAATTATTGAAGTTCTGGATATATTGCCTAGGGATGAGGGATACATGTATAGATGCTGGAATTTTATTATCTTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Autophagy_act_C DMRL_synthase

Protein Analysis

355

Amino Acids

40.11

Weight (kDa)

6.21

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DMRL_synthase	PF00885	233 - 289	3.3e-14	6,7-dimethyl-8-ribityllumazine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44050
fragaria_vesca	FvH4_1g00110 FvH4_2g10600
malus_domestica	MD15G1142400.v1.1
prunus_persica	Prupe.7G270800_v2.0.a1 Prupe.7G270800_v2.0.a1
pyrus_communis	pycom15g12850
rosa_chinensis	RchiOBHm_Chr2g0084411 RchiOBHm_Chr7g0214271 RchiOBHm_Chr7g0227511
rosa_laevigata	RLG00000015614
rosa_multiflora	Rmu_sc0028043.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032080 Rroxscaffold_2G00156120 Rroxscaffold_6G00389680 Rroxscaffold_7G00200880 Rroxscaffold_7G00200890
rosa_samantha	Rh2DG001600 Rh7AG437800
rosa_wichuraiana	Rw2G000130 Rw4G009510 Rw7G031050 Rw7G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	367
AccII	CGCG	1 cut(s)	710
AciI	CCGC	3 cut(s)	363, 481, 710
AcsI	RAATTY	1 cut(s)	1048
AfaI	GTAC	2 cut(s)	331, 928
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	1032
AgeI	ACCGGT	1 cut(s)	36
AgsI	TTSAA	9 cut(s)	83, 119, 152, 268, 543, 778, 794, 836, 998
AjnI	CCWGG	3 cut(s)	159, 286, 823
AluBI	AGCT	6 cut(s)	23, 581, 692, 831, 903, 919
AluI	AGCT	6 cut(s)	23, 581, 692, 831, 903, 919
Alw21I	GWGCWC	1 cut(s)	463
Alw26I	GTCTC	2 cut(s)	137, 316
Alw44I	GTGCAC	1 cut(s)	459
AoxI	GGCC	4 cut(s)	256, 414, 424, 697
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	6 cut(s)	5, 354, 581, 584, 916, 964
ApoI	RAATTY	1 cut(s)	1048
AsiGI	ACCGGT	1 cut(s)	36
AspA2I	CCTAGG	1 cut(s)	1016
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	4 cut(s)	26, 388, 404, 541
AvaII	GGWCC	1 cut(s)	284
AvrII	CCTAGG	1 cut(s)	1016
BaeGI	GKGCMC	1 cut(s)	463
BauI	CACGAG	1 cut(s)	852
BbsI	GAAGAC	2 cut(s)	245, 523
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	6 cut(s)	17, 366, 568, 571, 928, 951
BccI	CCATC	3 cut(s)	344, 944, 964
BceAI	ACGGC	1 cut(s)	712
BcgI	CGANNNNNNTGC	4 cut(s)	322, 356, 905, 939
BciT130I	CCWGG	3 cut(s)	161, 288, 825
BciVI	GTATCC	1 cut(s)	1022
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	137, 316
BfaI	CTAG	3 cut(s)	755, 981, 1017
BfmI	CTRYAG	1 cut(s)	965
BfuI	GTATCC	1 cut(s)	1022
BisI	GCNGC	6 cut(s)	6, 355, 582, 585, 917, 965
BlnI	CCTAGG	1 cut(s)	1016
BlsI	GCNGC	6 cut(s)	7, 356, 583, 586, 918, 966
Bme1390I	CCNGG	3 cut(s)	161, 288, 825
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	3 cut(s)	679, 763, 822
BmrFI	CCNGG	3 cut(s)	161, 288, 825
BmsI	GCATC	4 cut(s)	163, 171, 951, 1031
BpiI	GAAGAC	2 cut(s)	245, 523
BplI	GAGNNNNNCTC	4 cut(s)	310, 342, 623, 655
BpuEI	CTTGAG	1 cut(s)	977
BsaBI	GATNNNNATC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	102, 1016
BsaWI	WCCGGW	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse118I	RCCGGY	1 cut(s)	36
Bse8I	GATNNNNATC	1 cut(s)	399
BseBI	CCWGG	3 cut(s)	161, 288, 825
BseDI	CCNNGG	2 cut(s)	102, 1016
BseGI	GGATG	2 cut(s)	49, 1027
BseJI	GATNNNNATC	1 cut(s)	399
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	168
BseRI	GAGGAG	2 cut(s)	334, 349
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	6 cut(s)	17, 366, 568, 571, 928, 951
Bsh1236I	CGCG	1 cut(s)	710
BshFI	GGCC	4 cut(s)	258, 416, 426, 699
BshTI	ACCGGT	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	463
BsiSI	CCGG	1 cut(s)	37
BsiWI	CGTACG	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	137, 316
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	4 cut(s)	258, 416, 426, 699
Bso31I	GGTCTC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp143I	GATC	3 cut(s)	17, 196, 307
BspACI	CCGC	3 cut(s)	363, 481, 710
BspANI	GGCC	4 cut(s)	258, 416, 426, 699
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	710
BspLI	GGNNCC	3 cut(s)	679, 763, 822
BspMAI	CTGCAG	1 cut(s)	969
BspTNI	GGTCTC	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	36
BssAI	RCCGGY	1 cut(s)	36
BssECI	CCNNGG	2 cut(s)	102, 1016
BssMI	GATC	3 cut(s)	17, 196, 307
BssNAI	GTATAC	1 cut(s)	368
BssSI	CACGAG	1 cut(s)	852
BssT1I	CCWWGG	2 cut(s)	102, 1016
Bst1107I	GTATAC	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	852
Bst2UI	CCWGG	3 cut(s)	161, 288, 825
Bst4CI	ACNGT	3 cut(s)	661, 673, 726
Bst6I	CTCTTC	4 cut(s)	78, 473, 523, 792
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	49, 1027
BstFNI	CGCG	1 cut(s)	710
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	3 cut(s)	20, 199, 310
BstMAI	GTCTC	2 cut(s)	137, 316
BstMBI	GATC	3 cut(s)	17, 196, 307
BstMWI	GCNNNNNNNGC	4 cut(s)	360, 653, 857, 961
BstNI	CCWGG	3 cut(s)	161, 288, 825
BstNSI	RCATGY	1 cut(s)	1036
BstSCI	CCNGG	3 cut(s)	159, 286, 823
BstSFI	CTRYAG	1 cut(s)	965
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	1 cut(s)	710
BstV1I	GCAGC	6 cut(s)	17, 366, 568, 571, 928, 951
BstV2I	GAAGAC	2 cut(s)	245, 523
BstZ17I	GTATAC	1 cut(s)	368
BsuI	GTATCC	1 cut(s)	1022
BsuRI	GGCC	4 cut(s)	258, 416, 426, 699
BtsCI	GGATG	2 cut(s)	49, 1027
BtsI	GCAGTG	2 cut(s)	232, 749
BtsIMutI	CAGTG	2 cut(s)	232, 749
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	36
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	2 cut(s)	330, 927
CspAI	ACCGGT	1 cut(s)	36
CviAII	CATG	4 cut(s)	260, 455, 882, 1033
CviQI	GTAC	2 cut(s)	330, 927
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	3 cut(s)	19, 198, 309
DpnII	GATC	3 cut(s)	17, 196, 307
Eam1104I	CTCTTC	4 cut(s)	78, 473, 523, 792
EarI	CTCTTC	4 cut(s)	78, 473, 523, 792
Eco130I	CCWWGG	2 cut(s)	102, 1016
Eco147I	AGGCCT	1 cut(s)	426
Eco31I	GGTCTC	1 cut(s)	316
Eco32I	GATATC	2 cut(s)	112, 879
Eco47I	GGWCC	1 cut(s)	284
EcoRII	CCWGG	3 cut(s)	159, 286, 823
EcoRV	GATATC	2 cut(s)	112, 879
EcoT14I	CCWWGG	2 cut(s)	102, 1016
EcoT22I	ATGCAT	1 cut(s)	897
ErhI	CCWWGG	2 cut(s)	102, 1016
FaeI	CATG	4 cut(s)	263, 458, 885, 1036
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FatI	CATG	4 cut(s)	259, 454, 881, 1032
FbaI	TGATCA	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	367
Fnu4HI	GCNGC	6 cut(s)	6, 355, 582, 585, 917, 965
FokI	GGATG	2 cut(s)	56, 1034
Fsp4HI	GCNGC	6 cut(s)	6, 355, 582, 585, 917, 965
FspAI	RTGCGCAY	1 cut(s)	62
FspBI	CTAG	3 cut(s)	755, 981, 1017
FspI	TGCGCA	1 cut(s)	62
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	6 cut(s)	6, 355, 582, 585, 917, 965
HaeIII	GGCC	4 cut(s)	258, 416, 426, 699
HapII	CCGG	1 cut(s)	37
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	4 cut(s)	263, 458, 885, 1036
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	86, 119, 451
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	4 cut(s)	26, 388, 404, 541
Hpy166II	GTNNAC	3 cut(s)	230, 368, 461
Hpy188I	TCNGA	3 cut(s)	14, 91, 124
Hpy188III	TCNNGA	3 cut(s)	311, 794, 1004
Hpy8I	GTNNAC	3 cut(s)	230, 368, 461
HpyAV	CCTTC	1 cut(s)	710
HpyCH4III	ACNGT	3 cut(s)	661, 673, 726
HpyCH4V	TGCA	9 cut(s)	461, 587, 599, 611, 617, 851, 885, 895, 967
HpyF10VI	GCNNNNNNNGC	4 cut(s)	360, 653, 857, 961
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	263, 458, 885, 1036
HspAI	GCGC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	17, 196, 307
LmnI	GCTCC	3 cut(s)	631, 761, 900
Lsp1109I	GCAGC	6 cut(s)	17, 366, 568, 571, 928, 951
LweI	GCATC	4 cut(s)	163, 171, 951, 1031
MaeI	CTAG	3 cut(s)	755, 981, 1017
MaeIII	GTNAC	3 cut(s)	32, 682, 739
MalI	GATC	3 cut(s)	19, 198, 309
MboI	GATC	3 cut(s)	17, 196, 307
MfeI	CAATTG	1 cut(s)	588
MhlI	GDGCHC	1 cut(s)	463
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	2 cut(s)	21, 629
Mph1103I	ATGCAT	1 cut(s)	897
MseI	TTAA	7 cut(s)	201, 249, 434, 438, 729, 767, 936
MslI	CAYNNNNRTG	1 cut(s)	809
MspI	CCGG	1 cut(s)	37
MspR9I	CCNGG	3 cut(s)	161, 288, 825
MunI	CAATTG	1 cut(s)	588
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	3 cut(s)	161, 288, 825
MvnI	CGCG	1 cut(s)	710
MwoI	GCNNNNNNNGC	4 cut(s)	360, 653, 857, 961
NdeII	GATC	3 cut(s)	17, 196, 307
NlaIII	CATG	4 cut(s)	263, 458, 885, 1036
NlaIV	GGNNCC	3 cut(s)	679, 763, 822
NmuCI	GTSAC	2 cut(s)	32, 739
NsbI	TGCGCA	1 cut(s)	62
NsiI	ATGCAT	1 cut(s)	897
NspI	RCATGY	1 cut(s)	1036
PacI	TTAATTAA	1 cut(s)	438
PceI	AGGCCT	1 cut(s)	426
PciI	ACATGT	1 cut(s)	1032
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	2 cut(s)	119, 451
Pfl23II	CGTACG	1 cut(s)	329
PinAI	ACCGGT	1 cut(s)	36
PkrI	GCNGC	6 cut(s)	7, 356, 583, 586, 918, 966
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PscI	ACATGT	1 cut(s)	1032
Psp6I	CCWGG	3 cut(s)	159, 286, 823
PspGI	CCWGG	3 cut(s)	159, 286, 823
PspLI	CGTACG	1 cut(s)	329
PspN4I	GGNNCC	3 cut(s)	679, 763, 822
PspPI	GGNCC	1 cut(s)	284
PstI	CTGCAG	1 cut(s)	969
RsaI	GTAC	2 cut(s)	331, 928
RsaNI	GTAC	2 cut(s)	330, 927
RseI	CAYNNNNRTG	1 cut(s)	809
SaqAI	TTAA	7 cut(s)	201, 249, 434, 438, 729, 767, 936
SatI	GCNGC	6 cut(s)	6, 355, 582, 585, 917, 965
Sau3AI	GATC	3 cut(s)	17, 196, 307
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	3 cut(s)	161, 288, 825
SduI	GDGCHC	1 cut(s)	463
SetI	ASST	8 cut(s)	25, 162, 328, 583, 694, 833, 905, 921
SfaNI	GCATC	4 cut(s)	163, 171, 951, 1031
SfcI	CTRYAG	1 cut(s)	965
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	809
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
SseBI	AGGCCT	1 cut(s)	426
SsiI	CCGC	3 cut(s)	363, 481, 710
SspMI	CTAG	3 cut(s)	755, 981, 1017
StuI	AGGCCT	1 cut(s)	426
StyD4I	CCNGG	3 cut(s)	159, 286, 823
StyI	CCWWGG	2 cut(s)	102, 1016
TaaI	ACNGT	3 cut(s)	661, 673, 726
TaqI	TCGA	3 cut(s)	75, 649, 948
TfiI	GAWTC	2 cut(s)	119, 451
Tru1I	TTAA	7 cut(s)	201, 249, 434, 438, 729, 767, 936
Tru9I	TTAA	7 cut(s)	201, 249, 434, 438, 729, 767, 936
TscAI	CASTG	2 cut(s)	232, 756
TseFI	GTSAC	2 cut(s)	32, 739
TseI	GCWGC	6 cut(s)	5, 354, 581, 584, 916, 964
Tsp45I	GTSAC	2 cut(s)	32, 739
TspDTI	ATGAA	2 cut(s)	58, 460
TspGWI	ACGGA	3 cut(s)	20, 511, 670
TspRI	CASTG	2 cut(s)	232, 756
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	1 cut(s)	1048
XceI	RCATGY	1 cut(s)	1036
XmaJI	CCTAGG	1 cut(s)	1016
XmiI	GTMKAC	1 cut(s)	367
XspI	CTAG	3 cut(s)	755, 981, 1017
Zsp2I	ATGCAT	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.