Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008755

Physical Location & Seq

Genomic Coordinates Forward (+)

48364527 .. 48367372

Gene Structure 2846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00200890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCCTCAATTCTTGCCTCATGTGACTGCAGAGGATCAGCACACTGCTATGGTCAAGGCCAAGGAGACTTGTGAGTTCTTGCTCGGGAATAATGGGATGACTTTGAGTTCGGTTTTGGGAGAGATTGGTGTGCTTCTCCCGGAATATGAGTTTGCTTCTGTTAGGGCAGGAGTCGAGATGGCTTTAAGTAATGCAGTTGCTACAAAAGAGGACATTGATGTGGTATGGGTTCCTGGTAGCTTTGAGATTGGTGTAGTTGCACAGAGGCTTGGAAGTTCGGGGAGATATCATGCAGTTTTATGCATCGGAGCTGTGATAAGAGGTGATACAACCCACTACGATGCTGTTGCTAATTCAGCTGCATCCGGAGTGCTTTCAGCTGGTTTAAAATCAGGTGTCCCATGCATATTCGGTGTCTTAACTTGTGATAATATGGAGCAGGCTTTAAATCGAGGTGGTGGTAAATCTGGAATTAAGAGTGCAGAGACGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Autophagy_act_C DMRL_synthase

Protein Analysis

164

Amino Acids

17.05

Weight (kDa)

5.11

Isoelectric Point (pI)

25.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DMRL_synthase	PF00885	55 - 162	2.1e-33	6,7-dimethyl-8-ribityllumazine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44050
fragaria_vesca	FvH4_1g00110 FvH4_2g10600
malus_domestica	MD15G1142400.v1.1
prunus_persica	Prupe.7G270800_v2.0.a1 Prupe.7G270800_v2.0.a1
pyrus_communis	pycom15g12850
rosa_chinensis	RchiOBHm_Chr2g0084411 RchiOBHm_Chr7g0214271 RchiOBHm_Chr7g0227511
rosa_laevigata	RLG00000015614
rosa_multiflora	Rmu_sc0028043.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032080 Rroxscaffold_2G00156120 Rroxscaffold_6G00389680 Rroxscaffold_7G00200880 Rroxscaffold_7G00200890
rosa_samantha	Rh2DG001600 Rh7AG437800
rosa_wichuraiana	Rw2G000130 Rw4G009510 Rw7G031050 Rw7G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	365
AclWI	GGATC	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	488
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	4 cut(s)	240, 311, 359, 380
AluI	AGCT	4 cut(s)	240, 311, 359, 380
Alw26I	GTCTC	2 cut(s)	59, 479
AlwI	GGATC	1 cut(s)	42
Ama87I	CYCGRG	1 cut(s)	83
Aor13HI	TCCGGA	1 cut(s)	365
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	359
ArsI	GACNNNNNNTTYG	2 cut(s)	91, 123
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BciT130I	CCWGG	1 cut(s)	234
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	2 cut(s)	59, 479
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	140, 234
BmeT110I	CYCGRG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	140, 234
BmsI	GCATC	3 cut(s)	312, 331, 371
BpuMI	CCSGG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	488
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	365
BseAI	TCCGGA	1 cut(s)	365
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	102, 362
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	140, 366
BslFI	GGGAC	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	59, 479
BsmBI	CGTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	83
Bsp13I	TCCGGA	1 cut(s)	365
Bsp143I	GATC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	59
BspEI	TCCGGA	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	34
BssNI	GRCGYC	1 cut(s)	488
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	441
BstF5I	GGATG	2 cut(s)	102, 362
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	2 cut(s)	59, 479
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	2 cut(s)	138, 232
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	102, 362
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	1 cut(s)	441
CviAII	CATG	3 cut(s)	20, 290, 402
CviJI	RGCY	8 cut(s)	59, 182, 240, 268, 311, 359, 380, 443
CviKI_1	RGCY	8 cut(s)	59, 182, 240, 268, 311, 359, 380, 443
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
DraI	TTTAAA	2 cut(s)	387, 447
Eco130I	CCWWGG	1 cut(s)	60
Eco32I	GATATC	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	2 cut(s)	305, 407
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	479
FaeI	CATG	3 cut(s)	23, 293, 405
FaiI	YATR	9 cut(s)	21, 50, 147, 226, 291, 301, 403, 407, 434
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	3 cut(s)	19, 289, 401
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	2 cut(s)	109, 349
Fsp4HI	GCNGC	1 cut(s)	360
GluI	GCNGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	140, 366
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	3 cut(s)	23, 293, 405
HinfI	GANTC	1 cut(s)	171
HpaII	CCGG	2 cut(s)	140, 366
HphI	GGTGA	1 cut(s)	335
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	4 cut(s)	85, 175, 366, 468
HpyCH4V	TGCA	8 cut(s)	29, 194, 260, 293, 303, 362, 405, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	3 cut(s)	23, 293, 405
Kpn2I	TCCGGA	1 cut(s)	365
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	308, 436
LpnPI	CCDG	9 cut(s)	153, 153, 219, 246, 366, 378, 379, 425, 453
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	3 cut(s)	312, 331, 371
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MluCI	AATT	3 cut(s)	8, 352, 471
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	7 cut(s)	15, 25, 27, 202, 258, 314, 446
Mph1103I	ATGCAT	2 cut(s)	305, 407
MroI	TCCGGA	1 cut(s)	365
MseI	TTAA	5 cut(s)	185, 386, 419, 446, 474
MslI	CAYNNNNRTG	3 cut(s)	47, 218, 339
MspA1I	CMGCKG	2 cut(s)	359, 380
MspI	CCGG	2 cut(s)	140, 366
MspR9I	CCNGG	2 cut(s)	140, 234
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	356
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	23, 293, 405
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	1 cut(s)	22
NsiI	ATGCAT	2 cut(s)	305, 407
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	231
PstI	CTGCAG	1 cut(s)	31
PvuII	CAGCTG	2 cut(s)	359, 380
RseI	CAYNNNNRTG	3 cut(s)	47, 218, 339
SaqAI	TTAA	5 cut(s)	185, 386, 419, 446, 474
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	2 cut(s)	140, 234
SetI	ASST	7 cut(s)	242, 313, 325, 361, 382, 397, 457
SfaNI	GCATC	3 cut(s)	312, 331, 371
SfcI	CTRYAG	1 cut(s)	27
SmiMI	CAYNNNNRTG	3 cut(s)	47, 218, 339
Sse9I	AATT	3 cut(s)	8, 352, 471
StyD4I	CCNGG	2 cut(s)	138, 232
StyI	CCWWGG	1 cut(s)	60
TaqI	TCGA	2 cut(s)	174, 451
TasI	AATT	3 cut(s)	8, 352, 471
Tru1I	TTAA	5 cut(s)	185, 386, 419, 446, 474
Tru9I	TTAA	5 cut(s)	185, 386, 419, 446, 474
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	22
TspRI	CASTG	1 cut(s)	49
Zsp2I	ATGCAT	2 cut(s)	305, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.