Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008755

Physical Location & Seq

Genomic Coordinates Reverse (-)

206686 .. 208792

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015614

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTTCTGCTGCTTCGGCTTCAAGCACTGGGTGCTTAGTTCGGTCACGCCTCCCAGTCGGCGAATGTCAGCATCATCGTAATAACGGGATTGTACTGCTTCCCCAGTTACCCAAACCCCTCATCTCTCTTTCTTCTTCGGCTTCTTCTTCCAAAGCTGCTGCAACTGCAAGTGAGAGGAAGGAGCGTTCCTCTTTTGCTCAAACTGCGGCTGTTCGGCATCTCGTGGGTTCCGTTACCACAGCTCACGGCCTTCGCTTCGCAGTGGTTGTAGCACGGTTTAATGAGATTATCACAAAGCCACTGCTAGAGGGAGCATTAACTACTTTCAACAATTATTCTGTTCAAGAAGAGGACATTGATGTGGTATGGGTTCCTGGTAGCTTTGAAATTGGTGTAGTTGCACAGAGGCTTGGAAGTTCGGGGAGATATCATGCAGTTTTATGCATTGGAGCTGTGATAAGAGGTGATACAACCCACTATGATGCTGTTGCTAATTCAGCTGCATCCGGAGTGCTTTCAGCTGGTTTAAAATCAGGTGTTCCATGCATATTTGGTGTCTTAACTTGTGATAATATGGAGCAGGCTTTAAATCGAGCTGGTGGTAAATCTGGAAATAAGGGTGCAGAGACTGCCTTGACAGCTATTGAGATGGCATCTTTGTTTGCGCACCACTTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Autophagy_act_C DMRL_synthase

Protein Analysis

228

Amino Acids

23.61

Weight (kDa)

8.9

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DMRL_synthase	PF00885	84 - 221	4.7e-51	6,7-dimethyl-8-ribityllumazine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44050
fragaria_vesca	FvH4_1g00110 FvH4_2g10600
malus_domestica	MD15G1142400.v1.1
prunus_persica	Prupe.7G270800_v2.0.a1 Prupe.7G270800_v2.0.a1
pyrus_communis	pycom15g12850
rosa_chinensis	RchiOBHm_Chr2g0084411 RchiOBHm_Chr7g0214271 RchiOBHm_Chr7g0227511
rosa_laevigata	RLG00000015614
rosa_multiflora	Rmu_sc0028043.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032080 Rroxscaffold_2G00156120 Rroxscaffold_6G00389680 Rroxscaffold_7G00200880 Rroxscaffold_7G00200890
rosa_samantha	Rh2DG001600 Rh7AG437800
rosa_wichuraiana	Rw2G000130 Rw4G009510 Rw7G031050 Rw7G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	669
AccIII	TCCGGA	1 cut(s)	509
AciI	CCGC	1 cut(s)	209
AdeI	CACNNNGTG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	96
AgsI	TTSAA	5 cut(s)	24, 331, 347, 389, 679
AjnI	CCWGG	1 cut(s)	376
AloI	GAACNNNNNNTCC	2 cut(s)	172, 204
AluBI	AGCT	8 cut(s)	158, 245, 384, 455, 503, 524, 599, 644
AluI	AGCT	8 cut(s)	158, 245, 384, 455, 503, 524, 599, 644
Alw26I	GTCTC	1 cut(s)	623
AlwNI	CAGNNNCTG	1 cut(s)	632
Aor13HI	TCCGGA	1 cut(s)	509
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	4 cut(s)	11, 158, 161, 503
AspLEI	GCGC	1 cut(s)	670
AsuHPI	GGTGA	1 cut(s)	479
BauI	CACGAG	1 cut(s)	224
BbvI	GCAGC	3 cut(s)	145, 148, 490
BccI	CCATC	1 cut(s)	646
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	5 cut(s)	12, 159, 162, 210, 504
BlsI	GCNGC	5 cut(s)	13, 160, 163, 211, 505
Bme1390I	CCNGG	1 cut(s)	378
BmiI	GGNNCC	2 cut(s)	232, 375
BmrFI	CCNGG	1 cut(s)	378
BmrI	ACTGGG	3 cut(s)	39, 50, 100
BmsI	GCATC	5 cut(s)	82, 229, 475, 515, 665
BmuI	ACTGGG	3 cut(s)	39, 50, 100
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BsaWI	WCCGGW	1 cut(s)	509
Bse1I	ACTGG	3 cut(s)	34, 56, 106
BseAI	TCCGGA	1 cut(s)	509
BseBI	CCWGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	506
BseNI	ACTGG	3 cut(s)	34, 56, 106
BseXI	GCAGC	3 cut(s)	145, 148, 490
BsgI	GTGCAG	1 cut(s)	645
BshFI	GGCC	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	510
BsmAI	GTCTC	1 cut(s)	623
BsnI	GGCC	1 cut(s)	252
Bsp13I	TCCGGA	1 cut(s)	509
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	1 cut(s)	252
BspEI	TCCGGA	1 cut(s)	509
BspLI	GGNNCC	2 cut(s)	232, 375
BsrI	ACTGG	3 cut(s)	34, 56, 106
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	345
BstAPI	GCANNNNNTGC	2 cut(s)	33, 632
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	506
BstHHI	GCGC	1 cut(s)	670
BstMAI	GTCTC	1 cut(s)	623
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 17, 33, 167, 206, 500, 632, 641
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstV1I	GCAGC	3 cut(s)	145, 148, 490
BsuRI	GGCC	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	506
BtsI	GCAGTG	2 cut(s)	270, 302
BtsIMutI	CAGTG	3 cut(s)	27, 270, 302
Cac8I	GCNNGC	1 cut(s)	585
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	1 cut(s)	670
Csp6I	GTAC	1 cut(s)	95
CviAII	CATG	2 cut(s)	434, 546
CviQI	GTAC	1 cut(s)	95
DdeI	CTNAG	1 cut(s)	37
DraI	TTTAAA	2 cut(s)	531, 591
DraIII	CACNNNGTG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco32I	GATATC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	376
EcoRV	GATATC	1 cut(s)	431
EcoT22I	ATGCAT	2 cut(s)	449, 551
FaeI	CATG	2 cut(s)	437, 549
FaiI	YATR	7 cut(s)	370, 435, 445, 483, 547, 551, 578
FatI	CATG	2 cut(s)	433, 545
Fnu4HI	GCNGC	5 cut(s)	12, 159, 162, 210, 504
FokI	GGATG	1 cut(s)	493
Fsp4HI	GCNGC	5 cut(s)	12, 159, 162, 210, 504
FspBI	CTAG	1 cut(s)	308
FspI	TGCGCA	1 cut(s)	669
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	5 cut(s)	12, 159, 162, 210, 504
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	1 cut(s)	510
HhaI	GCGC	1 cut(s)	670
Hin1II	CATG	2 cut(s)	437, 549
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	1 cut(s)	479
Hpy188III	TCNNGA	3 cut(s)	347, 510, 612
HpyAV	CCTTC	2 cut(s)	175, 263
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4V	TGCA	8 cut(s)	164, 170, 404, 437, 447, 506, 549, 626
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 17, 33, 167, 206, 500, 632, 641
HpyF3I	CTNAG	1 cut(s)	37
Hsp92II	CATG	2 cut(s)	437, 549
HspAI	GCGC	1 cut(s)	668
Kpn2I	TCCGGA	1 cut(s)	509
LmnI	GCTCC	4 cut(s)	184, 314, 452, 580
Lsp1109I	GCAGC	3 cut(s)	145, 148, 490
LweI	GCATC	5 cut(s)	82, 229, 475, 515, 665
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	3 cut(s)	45, 108, 235
MboII	GAAGA	5 cut(s)	126, 129, 138, 141, 362
MluCI	AATT	3 cut(s)	334, 390, 496
MnlI	CCTC	8 cut(s)	62, 131, 171, 202, 304, 346, 402, 458
Mph1103I	ATGCAT	2 cut(s)	449, 551
MroI	TCCGGA	1 cut(s)	509
MseI	TTAA	5 cut(s)	282, 320, 530, 563, 590
MslI	CAYNNNNRTG	2 cut(s)	362, 483
MspA1I	CMGCKG	2 cut(s)	503, 524
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	8 cut(s)	11, 17, 33, 167, 206, 500, 632, 641
NlaIII	CATG	2 cut(s)	437, 549
NlaIV	GGNNCC	2 cut(s)	232, 375
NmuCI	GTSAC	1 cut(s)	45
NsbI	TGCGCA	1 cut(s)	669
NsiI	ATGCAT	2 cut(s)	449, 551
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PkrI	GCNGC	5 cut(s)	13, 160, 163, 211, 505
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	232, 375
PstNI	CAGNNNCTG	1 cut(s)	632
PvuII	CAGCTG	2 cut(s)	503, 524
RsaI	GTAC	1 cut(s)	96
RsaNI	GTAC	1 cut(s)	95
RseI	CAYNNNNRTG	2 cut(s)	362, 483
SaqAI	TTAA	5 cut(s)	282, 320, 530, 563, 590
SatI	GCNGC	5 cut(s)	12, 159, 162, 210, 504
ScrFI	CCNGG	1 cut(s)	378
SfaNI	GCATC	5 cut(s)	82, 229, 475, 515, 665
SmiMI	CAYNNNNRTG	2 cut(s)	362, 483
Sse9I	AATT	3 cut(s)	334, 390, 496
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	595
TaqII	GACCGA	1 cut(s)	33
TasI	AATT	3 cut(s)	334, 390, 496
TatI	WGTACW	1 cut(s)	94
TauI	GCSGC	1 cut(s)	212
Tru1I	TTAA	5 cut(s)	282, 320, 530, 563, 590
Tru9I	TTAA	5 cut(s)	282, 320, 530, 563, 590
TscAI	CASTG	3 cut(s)	34, 270, 309
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	4 cut(s)	11, 158, 161, 503
Tsp45I	GTSAC	1 cut(s)	45
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	3 cut(s)	34, 270, 309
XspI	CTAG	1 cut(s)	308
Zsp2I	ATGCAT	2 cut(s)	449, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.