Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008755

Physical Location & Seq

Genomic Coordinates Forward (+)

59012008 .. 59014706

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG437800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGGAGCTTCTTATCCGGTGGCTGCACCGGTCCCGATTCTTCACTGAGAGTCTCCAACTCCGCCCACCGAGCCCAATCGACCTGATCCGTCCGGCTCTTCGAGATCGAGATAAACCCCCCCGTTCTCGAGACTCGATCCCTTGTGGCCAGTATGGAGGACAATGCGTCGAGACCAACACGGCATTATTTAATCTCGTCCTCAAGGCTATGCACGGTGGCAAAGAGTCCGAAGCCGCTAATGTTGAGTACAATCTTGAAGTTGAAATGGCCTCTGCTGCTTCGGCTTCAAGCACTGGGTGCTTAGTTCGTTCACGCCTCCCACTCGGCGAATGTCAGCATCATCGTAATAACGGGACTGCACTACTTCCCCAGTTACCCAAACCCCTCATCTCTCTTTCTTCTTCTTCCAAAGCTGCTGCAATTGCAATTGCAATTCCAACTGCAACTGCAAGTGAGAGGAAGGAGCGTTCCTCTTTTGCTCGAACTGCGGCTGTTCGGCATCTGTTGGGTTCCGTTACCACAGCTCACGGCCTTCGTTTCGCAGTGGTTGTAGCACGGTTTAATGAGATTGTCACAAAGCCACTGCTAGAGGGAGCCTTAACTACTTTCAACAATTATTCTGTTCAAGAAGAGGACATTGATGTGGTATGGGTTCCTGGTAGCTTTGAGATTGGTGTAGTTGCACAGAGGCTTGGAAGTTCGGGGAGATATCATGCAGTTTTATGCATTGGAGCTGTGATAAGAGGTGATACAACCCACTACGATGCTGTTGCTAATTCAGCTGCATCCGGAGTGCTTTCAGCTGGTTTAAAATCAGGTGTTCCATGCATATTCGGTGTCTTAACTTGTGATAATATGGAGCAGTTAAACTTTTCATTGAAGTATTCAAATGTAGCACATTTTACTCTTCAGAGTTATCTTCTTATTACCAGAGGAAGAATAATCTTACTGTGCCATTCATTACCATTGCAGGCTTTAAATCGAGCTGGTGGTAAATATGGAAATAAGGGTGCAGAGACTGCCTTGACAGCTAATTATATGATGAAGTACTTCAGAGAGGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Autophagy_act_C DMRL_synthase

Protein Analysis

356

Amino Acids

38.67

Weight (kDa)

8.88

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DMRL_synthase	PF00885	178 - 289	1.6e-38	6,7-dimethyl-8-ribityllumazine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44050
fragaria_vesca	FvH4_1g00110 FvH4_2g10600
malus_domestica	MD15G1142400.v1.1
prunus_persica	Prupe.7G270800_v2.0.a1 Prupe.7G270800_v2.0.a1
pyrus_communis	pycom15g12850
rosa_chinensis	RchiOBHm_Chr2g0084411 RchiOBHm_Chr7g0214271 RchiOBHm_Chr7g0227511
rosa_laevigata	RLG00000015614
rosa_multiflora	Rmu_sc0028043.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032080 Rroxscaffold_2G00156120 Rroxscaffold_6G00389680 Rroxscaffold_7G00200880 Rroxscaffold_7G00200890
rosa_samantha	Rh2DG001600 Rh7AG437800
rosa_wichuraiana	Rw2G000130 Rw4G009510 Rw7G031050 Rw7G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	791
AciI	CCGC	3 cut(s)	64, 237, 491
AclWI	GGATC	2 cut(s)	82, 133
AcoI	YGGCCR	1 cut(s)	148
AcuI	CTGAAG	2 cut(s)	896, 1039
AdeI	CACNNNGTG	1 cut(s)	300
AfaI	GTAC	2 cut(s)	251, 1052
AgeI	ACCGGT	1 cut(s)	30
AgsI	TTSAA	7 cut(s)	260, 266, 291, 613, 629, 883, 891
AhdI	GACNNNNNGTC	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	658
AloI	GAACNNNNNNTCC	2 cut(s)	454, 486
AluBI	AGCT	9 cut(s)	10, 416, 527, 666, 737, 785, 806, 989, 1034
AluI	AGCT	9 cut(s)	10, 416, 527, 666, 737, 785, 806, 989, 1034
Alw26I	GTCTC	4 cut(s)	59, 126, 167, 1013
AlwI	GGATC	2 cut(s)	82, 133
AlwNI	CAGNNNCTG	1 cut(s)	1022
Ama87I	CYCGRG	1 cut(s)	129
Aor13HI	TCCGGA	1 cut(s)	791
AoxI	GGCC	3 cut(s)	148, 270, 532
ApeKI	GCWGC	5 cut(s)	25, 278, 416, 419, 785
AsiGI	ACCGGT	1 cut(s)	30
Asp700I	GAANNNNTTC	1 cut(s)	1052
AspS9I	GGNCC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	761
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	77
BbvI	GCAGC	5 cut(s)	12, 265, 403, 406, 772
BceAI	ACGGC	2 cut(s)	198, 547
BcgI	CGANNNNNNTGC	2 cut(s)	755, 789
BciT130I	CCWGG	1 cut(s)	660
BcoDI	GTCTC	4 cut(s)	59, 126, 167, 1013
BfaI	CTAG	1 cut(s)	590
BisI	GCNGC	7 cut(s)	26, 237, 279, 417, 420, 492, 786
BlsI	GCNGC	7 cut(s)	27, 238, 280, 418, 421, 493, 787
BmcAI	AGTACT	1 cut(s)	1052
Bme1390I	CCNGG	1 cut(s)	660
Bme18I	GGWCC	1 cut(s)	33
BmeRI	GACNNNNNGTC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	4 cut(s)	35, 514, 598, 657
BmrFI	CCNGG	1 cut(s)	660
BmrI	ACTGGG	2 cut(s)	306, 367
BmsI	GCATC	4 cut(s)	349, 511, 757, 797
BmuI	ACTGGG	2 cut(s)	306, 367
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpuEI	CTTGAG	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	167
BsaWI	WCCGGW	3 cut(s)	18, 30, 791
Bse118I	RCCGGY	1 cut(s)	30
Bse1I	ACTGG	3 cut(s)	151, 301, 373
Bse3DI	GCAATG	1 cut(s)	968
BseAI	TCCGGA	1 cut(s)	791
BseBI	CCWGG	1 cut(s)	660
BseGI	GGATG	2 cut(s)	788, 1069
BseMI	GCAATG	1 cut(s)	968
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	3 cut(s)	151, 301, 373
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	5 cut(s)	12, 265, 403, 406, 772
BsgI	GTGCAG	3 cut(s)	11, 345, 1035
BshFI	GGCC	3 cut(s)	150, 272, 534
BshTI	ACCGGT	1 cut(s)	30
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	4 cut(s)	19, 31, 95, 792
BslFI	GGGAC	2 cut(s)	19, 370
BsmAI	GTCTC	4 cut(s)	59, 126, 167, 1013
BsmFI	GGGAC	2 cut(s)	19, 370
BsnI	GGCC	3 cut(s)	150, 272, 534
Bso31I	GGTCTC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp13I	TCCGGA	1 cut(s)	791
Bsp143I	GATC	3 cut(s)	87, 106, 138
BspACI	CCGC	3 cut(s)	64, 237, 491
BspANI	GGCC	3 cut(s)	150, 272, 534
BspCNI	CTCAG	1 cut(s)	40
BspEI	TCCGGA	1 cut(s)	791
BspLI	GGNNCC	4 cut(s)	35, 514, 598, 657
BspPI	GGATC	2 cut(s)	82, 133
BspQI	GCTCTTC	1 cut(s)	105
BspTNI	GGTCTC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	968
BsrFI	RCCGGY	1 cut(s)	30
BsrI	ACTGG	3 cut(s)	151, 301, 373
BssAI	RCCGGY	1 cut(s)	30
BssMI	GATC	3 cut(s)	87, 106, 138
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	3 cut(s)	218, 561, 954
Bst6I	CTCTTC	3 cut(s)	105, 627, 915
BstAPI	GCANNNNNTGC	2 cut(s)	300, 1022
BstC8I	GCNNGC	1 cut(s)	975
BstDEI	CTNAG	2 cut(s)	48, 304
BstF5I	GGATG	2 cut(s)	788, 1069
BstKTI	GATC	3 cut(s)	90, 109, 141
BstMAI	GTCTC	4 cut(s)	59, 126, 167, 1013
BstMBI	GATC	3 cut(s)	87, 106, 138
BstMWI	GCNNNNNNNGC	9 cut(s)	72, 278, 284, 300, 425, 488, 782, 1022, 1031
BstNI	CCWGG	1 cut(s)	660
BstSCI	CCNGG	1 cut(s)	658
BstV1I	GCAGC	5 cut(s)	12, 265, 403, 406, 772
BsuRI	GGCC	3 cut(s)	150, 272, 534
BtsCI	GGATG	2 cut(s)	788, 1069
BtsI	GCAGTG	2 cut(s)	552, 584
BtsIMutI	CAGTG	4 cut(s)	45, 294, 552, 584
Cac8I	GCNNGC	1 cut(s)	975
CaiI	CAGNNNCTG	1 cut(s)	1022
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	33
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	250, 1051
CspAI	ACCGGT	1 cut(s)	30
CviAII	CATG	2 cut(s)	716, 828
CviQI	GTAC	2 cut(s)	250, 1051
DdeI	CTNAG	2 cut(s)	48, 304
DpnI	GATC	3 cut(s)	89, 108, 140
DpnII	GATC	3 cut(s)	87, 106, 138
DraI	TTTAAA	2 cut(s)	813, 981
DraIII	CACNNNGTG	1 cut(s)	300
DriI	GACNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	3 cut(s)	105, 627, 915
Eam1105I	GACNNNNNGTC	1 cut(s)	167
EarI	CTCTTC	3 cut(s)	105, 627, 915
EciI	GGCGGA	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	713
Eco47I	GGWCC	1 cut(s)	33
Eco57I	CTGAAG	2 cut(s)	896, 1039
Eco88I	CYCGRG	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	658
EcoRV	GATATC	1 cut(s)	713
EcoT22I	ATGCAT	2 cut(s)	731, 833
EcoT38I	GRGCYC	1 cut(s)	77
FaeI	CATG	2 cut(s)	719, 831
FaqI	GGGAC	2 cut(s)	19, 370
FatI	CATG	2 cut(s)	715, 827
Fnu4HI	GCNGC	7 cut(s)	26, 237, 279, 417, 420, 492, 786
FokI	GGATG	1 cut(s)	775
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	7 cut(s)	26, 237, 279, 417, 420, 492, 786
FspBI	CTAG	1 cut(s)	590
GluI	GCNGC	7 cut(s)	26, 237, 279, 417, 420, 492, 786
HaeIII	GGCC	3 cut(s)	150, 272, 534
HapII	CCGG	4 cut(s)	19, 31, 95, 792
HgaI	GACGC	1 cut(s)	157
Hin1II	CATG	2 cut(s)	719, 831
HinfI	GANTC	4 cut(s)	39, 52, 134, 227
HpaII	CCGG	4 cut(s)	19, 31, 95, 792
HphI	GGTGA	1 cut(s)	761
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	3 cut(s)	232, 915, 1058
Hpy188III	TCNNGA	9 cut(s)	36, 104, 110, 129, 131, 172, 257, 629, 792
Hpy8I	GTNNAC	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	2 cut(s)	457, 545
HpyCH4III	ACNGT	3 cut(s)	218, 561, 954
HpyF10VI	GCNNNNNNNGC	9 cut(s)	72, 278, 284, 300, 425, 488, 782, 1022, 1031
HpyF3I	CTNAG	2 cut(s)	48, 304
Hsp92II	CATG	2 cut(s)	719, 831
Kpn2I	TCCGGA	1 cut(s)	791
Kzo9I	GATC	3 cut(s)	87, 106, 138
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	5 cut(s)	7, 466, 596, 734, 862
Lsp1109I	GCAGC	5 cut(s)	12, 265, 403, 406, 772
LweI	GCATC	4 cut(s)	349, 511, 757, 797
MaeI	CTAG	1 cut(s)	590
MaeIII	GTNAC	3 cut(s)	375, 517, 574
MalI	GATC	3 cut(s)	89, 108, 140
MboI	GATC	3 cut(s)	87, 106, 138
MboII	GAAGA	9 cut(s)	34, 92, 393, 396, 399, 644, 902, 914, 951
MfeI	CAATTG	2 cut(s)	423, 429
MhlI	GDGCHC	1 cut(s)	77
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	6 cut(s)	423, 429, 435, 616, 778, 1036
MluNI	TGGCCA	1 cut(s)	150
MlyI	GAGTC	3 cut(s)	61, 128, 236
MmeI	TCCRAC	2 cut(s)	82, 464
Mox20I	TGGCCA	1 cut(s)	150
Mph1103I	ATGCAT	2 cut(s)	731, 833
MroI	TCCGGA	1 cut(s)	791
MroXI	GAANNNNTTC	1 cut(s)	1052
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	7 cut(s)	192, 564, 602, 812, 845, 869, 980
MslI	CAYNNNNRTG	2 cut(s)	644, 765
Msp20I	TGGCCA	1 cut(s)	150
MspA1I	CMGCKG	2 cut(s)	785, 806
MspI	CCGG	4 cut(s)	19, 31, 95, 792
MspR9I	CCNGG	1 cut(s)	660
MunI	CAATTG	2 cut(s)	423, 429
MvaI	CCWGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	9 cut(s)	72, 278, 284, 300, 425, 488, 782, 1022, 1031
NdeII	GATC	3 cut(s)	87, 106, 138
NlaIII	CATG	2 cut(s)	719, 831
NlaIV	GGNNCC	4 cut(s)	35, 514, 598, 657
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	574
NsiI	ATGCAT	2 cut(s)	731, 833
PaeR7I	CTCGAG	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	1052
PfeI	GAWTC	1 cut(s)	39
PinAI	ACCGGT	1 cut(s)	30
PkrI	GCNGC	7 cut(s)	27, 238, 280, 418, 421, 493, 787
PleI	GAGTC	3 cut(s)	60, 128, 235
PpsI	GAGTC	3 cut(s)	60, 128, 235
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	4 cut(s)	35, 514, 598, 657
PspPI	GGNCC	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	1022
PvuII	CAGCTG	2 cut(s)	785, 806
RsaI	GTAC	2 cut(s)	251, 1052
RsaNI	GTAC	2 cut(s)	250, 1051
RseI	CAYNNNNRTG	2 cut(s)	644, 765
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	7 cut(s)	192, 564, 602, 812, 845, 869, 980
SatI	GCNGC	7 cut(s)	26, 237, 279, 417, 420, 492, 786
Sau3AI	GATC	3 cut(s)	87, 106, 138
Sau96I	GGNCC	1 cut(s)	33
ScaI	AGTACT	1 cut(s)	1052
SchI	GAGTC	3 cut(s)	61, 128, 236
ScrFI	CCNGG	1 cut(s)	660
SduI	GDGCHC	1 cut(s)	77
SfaNI	GCATC	4 cut(s)	349, 511, 757, 797
Sfr274I	CTCGAG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	33
SlaI	CTCGAG	1 cut(s)	129
SmiMI	CAYNNNNRTG	2 cut(s)	644, 765
SmlI	CTYRAG	2 cut(s)	129, 203
SmoI	CTYRAG	2 cut(s)	129, 203
Sse9I	AATT	6 cut(s)	423, 429, 435, 616, 778, 1036
SsiI	CCGC	3 cut(s)	64, 237, 491
SspMI	CTAG	1 cut(s)	590
StyD4I	CCNGG	1 cut(s)	658
TaaI	ACNGT	3 cut(s)	218, 561, 954
TaqI	TCGA	8 cut(s)	81, 103, 109, 130, 137, 171, 484, 985
TasI	AATT	6 cut(s)	423, 429, 435, 616, 778, 1036
TatI	WGTACW	2 cut(s)	249, 1050
TauI	GCSGC	2 cut(s)	239, 494
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	7 cut(s)	192, 564, 602, 812, 845, 869, 980
Tru9I	TTAA	7 cut(s)	192, 564, 602, 812, 845, 869, 980
TscAI	CASTG	4 cut(s)	52, 301, 552, 591
TseFI	GTSAC	1 cut(s)	574
TseI	GCWGC	5 cut(s)	25, 278, 416, 419, 785
Tsp45I	GTSAC	1 cut(s)	574
TspDTI	ATGAA	3 cut(s)	867, 951, 1061
TspGWI	ACGGA	2 cut(s)	80, 505
TspRI	CASTG	4 cut(s)	52, 301, 552, 591
VpaK11BI	GGWCC	1 cut(s)	33
XhoI	CTCGAG	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	1052
XspI	CTAG	1 cut(s)	590
ZrmI	AGTACT	1 cut(s)	1052
Zsp2I	ATGCAT	2 cut(s)	731, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.