Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0008755

Physical Location & Seq

Genomic Coordinates Reverse (-)

162083 .. 164921

Gene Structure 2839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G000130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCTTCTGCTGCTTCGGCTTCAAGCACTGGGTGCTTAGTTCGTTCACGCCTCCCACTCGGCGAATGGCAGCATCATCGTAATAACGGGATTGCACTGCTTCCCCAGTTACCCAAACCCCTCATCTCTCTTTCTTCTTCTTCTTCCAAAGCTGCTGCAATTGCAATTGCAATTCCAATTCCAACTGCAACTGCAAGTGAGAGGAAGGAGCGTTCCTCTTTTGCTCGAACTGCGGCTGTTCGGCATCTCGTGGGTTCCGTTACCACAGCTCACGGCCTTCGTTTCGCAGTGGTTGTAGCACGGTTTAATGAGATTGTCACAAAGCCACTGCTAGAGGGAGCCTTAACTACTTTCAACAATTATTCTGTTCAAGAAGAGGACATTGATGTGGTATGGGTTCCTGGTAGCTTTGAAATTGGTGTAGTTGCACAGAGGCTTGGAAGTTCGGGGAGATATCATGCAGTTTTATGCATTGGAGCTGTGATAAGAGGTGATACAACCCACTACGATGCTGTTGCTAATTCAGCTGCATCCGGAGTGCTTTCAGCTGGTTTAAAATCAGGTGTTCCATGCATATTCGGTGTCTTAACTTGTGATAATATGGAGCAGGCTTTAAATCGAGCTGGTGGTAAATCTGGAAATAAGGGTGCAGAGACTGCCTTGACAGCTATTGAGATGGCATCTTTGTTTGTGCACCAATTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

Autophagy_act_C DMRL_synthase

Protein Analysis

235

Amino Acids

24.52

Weight (kDa)

9.21

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DMRL_synthase	PF00885	92 - 229	1.1e-50	6,7-dimethyl-8-ribityllumazine synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44050
fragaria_vesca	FvH4_1g00110 FvH4_2g10600
malus_domestica	MD15G1142400.v1.1
prunus_persica	Prupe.7G270800_v2.0.a1 Prupe.7G270800_v2.0.a1
pyrus_communis	pycom15g12850
rosa_chinensis	RchiOBHm_Chr2g0084411 RchiOBHm_Chr7g0214271 RchiOBHm_Chr7g0227511
rosa_laevigata	RLG00000015614
rosa_multiflora	Rmu_sc0028043.1_g000001
rosa_roxburghii	Rroxscaffold_1G00032080 Rroxscaffold_2G00156120 Rroxscaffold_6G00389680 Rroxscaffold_7G00200880 Rroxscaffold_7G00200890
rosa_samantha	Rh2DG001600 Rh7AG437800
rosa_wichuraiana	Rw2G000130 Rw4G009510 Rw7G031050 Rw7G038960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	533
AciI	CCGC	1 cut(s)	233
AdeI	CACNNNGTG	1 cut(s)	33
AgsI	TTSAA	5 cut(s)	24, 355, 371, 413, 703
AjnI	CCWGG	1 cut(s)	400
AloI	GAACNNNNNNTCC	2 cut(s)	196, 228
AluBI	AGCT	8 cut(s)	152, 269, 408, 479, 527, 548, 623, 668
AluI	AGCT	8 cut(s)	152, 269, 408, 479, 527, 548, 623, 668
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	1 cut(s)	647
Alw44I	GTGCAC	1 cut(s)	692
AlwNI	CAGNNNCTG	1 cut(s)	656
Aor13HI	TCCGGA	1 cut(s)	533
AoxI	GGCC	1 cut(s)	274
ApaLI	GTGCAC	1 cut(s)	692
ApeKI	GCWGC	5 cut(s)	11, 70, 152, 155, 527
AsuHPI	GGTGA	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	696
BauI	CACGAG	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	696
BbvI	GCAGC	4 cut(s)	82, 139, 142, 514
BccI	CCATC	1 cut(s)	670
BceAI	ACGGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	4 cut(s)	59, 93, 497, 531
BciT130I	CCWGG	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	1 cut(s)	332
BisI	GCNGC	6 cut(s)	12, 71, 153, 156, 234, 528
BlsI	GCNGC	6 cut(s)	13, 72, 154, 157, 235, 529
Bme1390I	CCNGG	1 cut(s)	402
BmiI	GGNNCC	3 cut(s)	256, 340, 399
BmrFI	CCNGG	1 cut(s)	402
BmrI	ACTGGG	2 cut(s)	39, 100
BmsI	GCATC	5 cut(s)	82, 253, 499, 539, 689
BmuI	ACTGGG	2 cut(s)	39, 100
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BsaWI	WCCGGW	1 cut(s)	533
Bse1I	ACTGG	2 cut(s)	34, 106
BseAI	TCCGGA	1 cut(s)	533
BseBI	CCWGG	1 cut(s)	402
BseGI	GGATG	1 cut(s)	530
BseNI	ACTGG	2 cut(s)	34, 106
BseSI	GKGCMC	1 cut(s)	696
BseXI	GCAGC	4 cut(s)	82, 139, 142, 514
BsgI	GTGCAG	1 cut(s)	669
BshFI	GGCC	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	696
BsiSI	CCGG	1 cut(s)	534
BsmAI	GTCTC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	696
Bsp13I	TCCGGA	1 cut(s)	533
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	1 cut(s)	276
BspEI	TCCGGA	1 cut(s)	533
BspLI	GGNNCC	3 cut(s)	256, 340, 399
BsrI	ACTGG	2 cut(s)	34, 106
BssSI	CACGAG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	369
BstAPI	GCANNNNNTGC	2 cut(s)	33, 656
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	530
BstMAI	GTCTC	1 cut(s)	647
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 17, 33, 161, 230, 524, 656, 665
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	1 cut(s)	400
BstSLI	GKGCMC	1 cut(s)	696
BstV1I	GCAGC	4 cut(s)	82, 139, 142, 514
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	530
BtsI	GCAGTG	3 cut(s)	95, 294, 326
BtsIMutI	CAGTG	4 cut(s)	27, 95, 294, 326
Cac8I	GCNNGC	1 cut(s)	609
CaiI	CAGNNNCTG	1 cut(s)	656
CviAII	CATG	2 cut(s)	458, 570
DdeI	CTNAG	1 cut(s)	37
DraI	TTTAAA	2 cut(s)	555, 615
DraIII	CACNNNGTG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	455
EcoT22I	ATGCAT	2 cut(s)	473, 575
FaeI	CATG	2 cut(s)	461, 573
FaiI	YATR	6 cut(s)	394, 459, 469, 571, 575, 602
FatI	CATG	2 cut(s)	457, 569
Fnu4HI	GCNGC	6 cut(s)	12, 71, 153, 156, 234, 528
FokI	GGATG	1 cut(s)	517
Fsp4HI	GCNGC	6 cut(s)	12, 71, 153, 156, 234, 528
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	6 cut(s)	12, 71, 153, 156, 234, 528
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	1 cut(s)	534
Hin1II	CATG	2 cut(s)	461, 573
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	2 cut(s)	47, 694
Hpy188III	TCNNGA	3 cut(s)	371, 534, 636
Hpy8I	GTNNAC	2 cut(s)	47, 694
HpyAV	CCTTC	2 cut(s)	199, 287
HpyCH4III	ACNGT	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 17, 33, 161, 230, 524, 656, 665
HpyF3I	CTNAG	1 cut(s)	37
Hsp92II	CATG	2 cut(s)	461, 573
Kpn2I	TCCGGA	1 cut(s)	533
LmnI	GCTCC	4 cut(s)	208, 338, 476, 604
Lsp1109I	GCAGC	4 cut(s)	82, 139, 142, 514
LweI	GCATC	5 cut(s)	82, 253, 499, 539, 689
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	3 cut(s)	108, 259, 316
MboII	GAAGA	5 cut(s)	126, 129, 132, 135, 386
MfeI	CAATTG	3 cut(s)	159, 165, 698
MhlI	GDGCHC	1 cut(s)	696
MluCI	AATT	8 cut(s)	159, 165, 171, 177, 358, 414, 520, 698
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	8 cut(s)	62, 131, 195, 226, 328, 370, 426, 482
Mph1103I	ATGCAT	2 cut(s)	473, 575
MroI	TCCGGA	1 cut(s)	533
MseI	TTAA	5 cut(s)	306, 344, 554, 587, 614
MslI	CAYNNNNRTG	2 cut(s)	386, 507
MspA1I	CMGCKG	2 cut(s)	527, 548
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	402
MunI	CAATTG	3 cut(s)	159, 165, 698
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	8 cut(s)	11, 17, 33, 161, 230, 524, 656, 665
NlaIII	CATG	2 cut(s)	461, 573
NlaIV	GGNNCC	3 cut(s)	256, 340, 399
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	316
NsiI	ATGCAT	2 cut(s)	473, 575
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PkrI	GCNGC	6 cut(s)	13, 72, 154, 157, 235, 529
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	256, 340, 399
PstNI	CAGNNNCTG	1 cut(s)	656
PvuII	CAGCTG	2 cut(s)	527, 548
RseI	CAYNNNNRTG	2 cut(s)	386, 507
SaqAI	TTAA	5 cut(s)	306, 344, 554, 587, 614
SatI	GCNGC	6 cut(s)	12, 71, 153, 156, 234, 528
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	696
SfaNI	GCATC	5 cut(s)	82, 253, 499, 539, 689
SmiMI	CAYNNNNRTG	2 cut(s)	386, 507
Sse9I	AATT	8 cut(s)	159, 165, 171, 177, 358, 414, 520, 698
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	226, 619
TasI	AATT	8 cut(s)	159, 165, 171, 177, 358, 414, 520, 698
TauI	GCSGC	1 cut(s)	236
Tru1I	TTAA	5 cut(s)	306, 344, 554, 587, 614
Tru9I	TTAA	5 cut(s)	306, 344, 554, 587, 614
TscAI	CASTG	4 cut(s)	34, 102, 294, 333
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	5 cut(s)	11, 70, 152, 155, 527
Tsp45I	GTSAC	1 cut(s)	316
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	4 cut(s)	34, 102, 294, 333
VneI	GTGCAC	1 cut(s)	692
XcmI	CCANNNNNNNNNTGG	1 cut(s)	63
XspI	CTAG	1 cut(s)	332
Zsp2I	ATGCAT	2 cut(s)	473, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.