Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013730

Physical Location & Seq

Genomic Coordinates Forward (+)

11616506 .. 11616931

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1156400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGACAATCCACAACTTTTTGCATATTCTCTTGCTCTTATGTTCCTTGATGATCATAAACACCGGCTGCACGGCCGAGGTTCCACCGGCGGTGAAAGCGGCATATTATCCTTCGTTTTCGCCGGATTTCCCACCTTCAGCCATAAACACATCATTCTTCACCCACATTTTCTATGCTTTTCTTGTGCCAAATAATGTCACTTTCAAATTTGACTTGCCAAATTCTACGGCTTTGCTCCTCTCCAATTTCACCACCACTCTCCGCCACAAAACTCCGCCGGTGAAGACCCTTTTTTCCATCGGTGGCGCAGCAGACGGCGTGGTGCTGCCATTCGTGTTTGCTCGCTTGGCCTCAAAAGCTTCTTCACGTTCACAATTCATACAATCTGCCATAGAGGTTGCACGTAAGTTTGGGTTGATGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0007586 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0008843 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016192 GO:0016787 GO:0016798 GO:0017144 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032501 GO:0032940 GO:0034774 GO:0035580 GO:0036230 GO:0042119 GO:0042581 GO:0042737 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044237 GO:0044245 GO:0044248 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046348 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060205 GO:0070013 GO:0070820 GO:0071704 GO:0097367 GO:0097708 GO:0099503 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1904724

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

142

Amino Acids

15.45

Weight (kDa)

9.34

Isoelectric Point (pI)

60.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	34 - 139	4.7e-12	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013730)

Species	Orthologous Gene IDs
malus_domestica	MD15G1156400.v1.1 MD15G1156500.v1.1 MD15G1156800.v1.1 MD15G1157100.v1.1
prunus_persica	Prupe.7G258400_v2.0.a1
pyrus_communis	pycom15g14090
rosa_chinensis	RchiOBHm_Chr2g0086331
rosa_laevigata	RLG00000015750
rosa_multiflora	Rmu_co8445245.1_g000001 Rmu_sc0004510.1_g000019 Rmu_sc0005127.1_g000013
rosa_roxburghii	Rroxscaffold_2G00154690
rosa_rugosa	Rorug01G0466600
rosa_samantha	Rh2AG016800 Rh2BG016600 Rh2CG017700 Rh2DG018400
rosa_wichuraiana	Rw2G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	89, 98, 262, 275
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	2 cut(s)	206, 220
AcuI	CTGAAG	1 cut(s)	120
AgsI	TTSAA	1 cut(s)	205
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
AoxI	GGCC	2 cut(s)	72, 348
ApeKI	GCWGC	3 cut(s)	66, 308, 325
ApoI	RAATTY	2 cut(s)	206, 220
AspLEI	GCGC	1 cut(s)	308
AsuHPI	GGTGA	4 cut(s)	103, 151, 241, 292
BbsI	GAAGAC	1 cut(s)	290
BbvI	GCAGC	3 cut(s)	53, 312, 320
BccI	CCATC	2 cut(s)	305, 412
BceAI	ACGGC	3 cut(s)	87, 243, 331
BclI	TGATCA	1 cut(s)	51
BfaI	CTAG	1 cut(s)	424
BisI	GCNGC	4 cut(s)	67, 99, 309, 326
BlsI	GCNGC	4 cut(s)	68, 100, 310, 327
BmiI	GGNNCC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	75
Bse118I	RCCGGY	3 cut(s)	62, 85, 277
BseDI	CCNNGG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	227
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	53, 312, 320
BsgI	GTGCAG	1 cut(s)	52
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	74, 350
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	4 cut(s)	63, 86, 122, 278
BsnI	GGCC	2 cut(s)	74, 350
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	4 cut(s)	89, 98, 262, 275
BspANI	GGCC	2 cut(s)	74, 350
BspLI	GGNNCC	1 cut(s)	81
BsrFI	RCCGGY	3 cut(s)	62, 85, 277
BssAI	RCCGGY	3 cut(s)	62, 85, 277
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	51
BstBAI	YACGTR	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 347, 356
BstV1I	GCAGC	3 cut(s)	53, 312, 320
BstV2I	GAAGAC	1 cut(s)	290
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	74, 350
Cac8I	GCNNGC	1 cut(s)	343
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	3 cut(s)	62, 85, 277
CviJI	RGCY	6 cut(s)	66, 74, 140, 230, 350, 359
CviKI_1	RGCY	6 cut(s)	66, 74, 140, 230, 350, 359
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
EciI	GGCGGA	2 cut(s)	251, 264
EclXI	CGGCCG	1 cut(s)	72
Eco52I	CGGCCG	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	120
FaiI	YATR	8 cut(s)	24, 40, 56, 103, 143, 174, 380, 392
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	67, 99, 309, 326
Fsp4HI	GCNGC	4 cut(s)	67, 99, 309, 326
FspBI	CTAG	1 cut(s)	424
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	4 cut(s)	67, 99, 309, 326
HaeIII	GGCC	2 cut(s)	74, 350
HapII	CCGG	4 cut(s)	63, 86, 122, 278
HhaI	GCGC	1 cut(s)	308
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HindIII	AAGCTT	1 cut(s)	357
HpaII	CCGG	4 cut(s)	63, 86, 122, 278
HphI	GGTGA	4 cut(s)	103, 151, 241, 292
Hpy166II	GTNNAC	1 cut(s)	371
Hpy8I	GTNNAC	1 cut(s)	371
HpyAV	CCTTC	2 cut(s)	120, 144
HpyCH4IV	ACGT	2 cut(s)	367, 403
HpyCH4V	TGCA	3 cut(s)	22, 69, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 347, 356
HpySE526I	ACGT	2 cut(s)	367, 403
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	4 cut(s)	76, 99, 135, 291
Lsp1109I	GCAGC	3 cut(s)	53, 312, 320
MaeI	CTAG	1 cut(s)	424
MaeII	ACGT	2 cut(s)	367, 403
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	3 cut(s)	148, 295, 354
MluCI	AATT	4 cut(s)	206, 220, 244, 374
MnlI	CCTC	4 cut(s)	70, 248, 361, 388
MspI	CCGG	4 cut(s)	63, 86, 122, 278
MwoI	GCNNNNNNNGC	3 cut(s)	95, 347, 356
NdeII	GATC	1 cut(s)	51
NlaIV	GGNNCC	1 cut(s)	81
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	196
PkrI	GCNGC	4 cut(s)	68, 100, 310, 327
Ppu21I	YACGTR	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	81
SatI	GCNGC	4 cut(s)	67, 99, 309, 326
Sau3AI	GATC	1 cut(s)	51
SetI	ASST	6 cut(s)	81, 136, 361, 370, 399, 406
SgrAI	CRCCGGYG	2 cut(s)	85, 277
Sse9I	AATT	4 cut(s)	206, 220, 244, 374
SsiI	CCGC	4 cut(s)	89, 98, 262, 275
SspMI	CTAG	1 cut(s)	424
TaiI	ACGT	2 cut(s)	370, 406
TasI	AATT	4 cut(s)	206, 220, 244, 374
TauI	GCSGC	1 cut(s)	101
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	3 cut(s)	66, 308, 325
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	367
XapI	RAATTY	2 cut(s)	206, 220
XspI	CTAG	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.