Rmu_sc0005127.1_g000013

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005127.1
Physical Location & Seq
Reverse (-)
75515 .. 76699
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005127.1_g000013.1.cds

Sequence Viewer

Length: 1086 bp
atgatcacgaccggaagtgcagcagagcccgcgtcggaaaaccctccagcggtgaaatcaggctattatccaccttcggataatttcccaccttcagccatagacactactttctttactcacgtctactatgcctttcttgtgccgagcaacgttacatttagatttgagctgtcaaatgaaacggctttactcctctcgaacttcaccaccgccctccgccacaagactccgtcagtgaagaccatgttgtccataggtggcggtgccggagaagaagtggcacacatctttgctagcatggcatcaaacccgtcctcacggtcaaacttcattgactcggctatagaagttgcacgtaagtttgggtttgatgggctggacctggactgggaataccctgaaagcccaatagaaatgaaggccttgggccacttgctaaaacaatggcgccgcgaaatcaagaaagaggcccaggctacaaatagccaacctctactgctcaccgccgctgtctacttctccgccgagttcttcctggatgccgtcatccgctcgtacccgattaagtacatggaaaagtacttggattgggccaatgtaatgtgcttcgactatcacggggcctggagcaatattacagggcccaatgcaccattatttgacccaaatagtaatgtgaactccgtttacgggcttaggtcatggatcaacggtggcatgaccccaaacaagctcgtaatgggcttgccactctatggccggacatgggagctcaaagaccctaaagataacggtattggatccattgctataggcccaggcccaggaaatggttcactcggcttcaacgagttggaggccctaaatgaggagtcgaccgccaccgtggtatatgacgccgacaccgtgtcggtatattctattaatgggtcaagttggattgcatttgacgatgcctttacaacaacctccaagatagggtttgctcaagctcttgggcttcgtgggtacttcttttgggccatcattcatgatagcaattggaagatctcggcccaagcttcaaagtcatggattctttga

Protein Analysis

361

Amino Acids

39.69

Weight (kDa)

5.12

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 250
AccB1I GGYRCC 2 cut(s) 266, 450
AccB7I CCANNNNNTGG 2 cut(s) 758, 833
AccBSI CCGCTC 1 cut(s) 555
AccI GTMKAC 3 cut(s) 126, 516, 878
AccII CGCG 2 cut(s) 32, 456
AclI AACGTT 1 cut(s) 153
AclWI GGATC 3 cut(s) 716, 798, 811
AcoI YGGCCR 1 cut(s) 760
AcuI CTGAAG 1 cut(s) 78
AcyI GRCGYC 2 cut(s) 451, 900
AfaI GTAC 4 cut(s) 560, 572, 584, 1013
AfiI CCNNNNNNNGG 9 cut(s) 49, 391, 693, 758, 769, 827, 833, 871, 981
AgsI TTSAA 2 cut(s) 850, 1068
AhdI GACNNNNNGTC 1 cut(s) 910
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 6 cut(s) 384, 474, 537, 626, 820, 826
AluBI AGCT 5 cut(s) 172, 736, 775, 995, 1064
AluI AGCT 5 cut(s) 172, 736, 775, 995, 1064
Alw21I GWGCWC 1 cut(s) 777
AlwI GGATC 3 cut(s) 716, 798, 811
ApaI GGGCCC 1 cut(s) 648
ApeKI GCWGC 1 cut(s) 20
AseI ATTAAT 1 cut(s) 927
Asp700I GAANNNNTTC 1 cut(s) 835
AspLEI GCGC 1 cut(s) 453
AsuHPI GGTGA 3 cut(s) 64, 199, 496
AsuNHI GCTAGC 1 cut(s) 296
AvaII GGWCC 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 648
BamHI GGATCC 1 cut(s) 803
BanI GGYRCC 2 cut(s) 266, 450
BanII GRGCYC 3 cut(s) 30, 648, 777
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 777
BbvI GCAGC 1 cut(s) 32
BccI CCATC 2 cut(s) 368, 1034
BceAI ACGGC 2 cut(s) 201, 530
BciT130I CCWGG 6 cut(s) 386, 476, 539, 628, 822, 828
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 2 cut(s) 345, 813
BfoI RGCGCY 1 cut(s) 454
BglII AGATCT 1 cut(s) 1050
BisI GCNGC 3 cut(s) 21, 454, 510
BlsI GCNGC 3 cut(s) 22, 455, 511
BmcAI AGTACT 1 cut(s) 584
Bme1390I CCNGG 6 cut(s) 386, 476, 539, 628, 822, 828
Bme18I GGWCC 1 cut(s) 382
BmeRI GACNNNNNGTC 1 cut(s) 910
BmgBI CACGTC 1 cut(s) 124
BmiI GGNNCC 5 cut(s) 268, 452, 625, 646, 805
BmrFI CCNGG 6 cut(s) 386, 476, 539, 628, 822, 828
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 3 cut(s) 314, 532, 946
BmtI GCTAGC 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 400
BpiI GAAGAC 1 cut(s) 248
BpmI CTGGAG 2 cut(s) 30, 649
Bpu10I CCTNAGC 1 cut(s) 698
BpuEI CTTGAG 1 cut(s) 975
BsaAI YACGTR 1 cut(s) 359
BsaHI GRCGYC 2 cut(s) 451, 900
BsaJI CCNNGG 5 cut(s) 426, 474, 820, 826, 888
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 9 cut(s) 49, 391, 693, 758, 769, 827, 833, 871, 981
Bse1I ACTGG 1 cut(s) 395
Bse3DI GCAATG 1 cut(s) 807
BseBI CCWGG 6 cut(s) 386, 476, 539, 628, 822, 828
BseDI CCNNGG 5 cut(s) 426, 474, 820, 826, 888
BseGI GGATG 2 cut(s) 547, 549
BseLI CCNNNNNNNGG 9 cut(s) 49, 391, 693, 758, 769, 827, 833, 871, 981
BseMI GCAATG 1 cut(s) 807
BseNI ACTGG 1 cut(s) 395
BseRI GAGGAG 2 cut(s) 185, 887
BseSI GKGCMC 1 cut(s) 648
BseXI GCAGC 1 cut(s) 32
BsgI GTGCAG 1 cut(s) 39
Bsh1236I CGCG 2 cut(s) 32, 456
Bsh1285I CGRYCG 2 cut(s) 12, 882
BshNI GGYRCC 2 cut(s) 266, 450
BsiEI CGRYCG 2 cut(s) 12, 882
BsiHKAI GWGCWC 1 cut(s) 777
BsiSI CCGG 3 cut(s) 12, 270, 763
BslI CCNNNNNNNGG 9 cut(s) 49, 391, 693, 758, 769, 827, 833, 871, 981
Bsp120I GGGCCC 1 cut(s) 644
Bsp1286I GDGCHC 3 cut(s) 30, 648, 777
Bsp143I GATC 4 cut(s) 3, 708, 803, 1050
BspFNI CGCG 2 cut(s) 32, 456
BspHI TCATGA 1 cut(s) 1033
BspLI GGNNCC 5 cut(s) 268, 452, 625, 646, 805
BspOI GCTAGC 1 cut(s) 300
BspPI GGATC 3 cut(s) 716, 798, 811
BspT107I GGYRCC 2 cut(s) 266, 450
BsrBI CCGCTC 1 cut(s) 555
BsrDI GCAATG 1 cut(s) 807
BsrI ACTGG 1 cut(s) 395
BssECI CCNNGG 5 cut(s) 426, 474, 820, 826, 888
BssMI GATC 4 cut(s) 3, 708, 803, 1050
BssNI GRCGYC 2 cut(s) 451, 900
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 6 cut(s) 386, 476, 539, 628, 822, 828
Bst4CI ACNGT 5 cut(s) 324, 716, 797, 889, 910
BstACI GRCGYC 2 cut(s) 451, 900
BstBAI YACGTR 1 cut(s) 359
BstC8I GCNNGC 3 cut(s) 30, 298, 749
BstDEI CTNAG 1 cut(s) 698
BstDSI CCRYGG 1 cut(s) 888
BstENI CCTNNNNNAGG 1 cut(s) 869
BstF5I GGATG 2 cut(s) 547, 549
BstFNI CGCG 2 cut(s) 32, 456
BstH2I RGCGCY 1 cut(s) 454
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 4 cut(s) 6, 711, 806, 1053
BstMBI GATC 4 cut(s) 3, 708, 803, 1050
BstMCI CGRYCG 2 cut(s) 12, 882
BstMWI GCNNNNNNNGC 2 cut(s) 29, 302
BstNI CCWGG 6 cut(s) 386, 476, 539, 628, 822, 828
BstSCI CCNGG 6 cut(s) 384, 474, 537, 626, 820, 826
BstSFI CTRYAG 2 cut(s) 345, 813
BstSLI GKGCMC 1 cut(s) 648
BstUI CGCG 2 cut(s) 32, 456
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 248
BstX2I RGATCY 2 cut(s) 803, 1050
BstYI RGATCY 2 cut(s) 803, 1050
BtgI CCRYGG 1 cut(s) 888
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 2 cut(s) 547, 549
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 3 cut(s) 30, 298, 749
CciI TCATGA 1 cut(s) 1033
CfoI GCGC 1 cut(s) 453
CseI GACGC 2 cut(s) 21, 908
Csp6I GTAC 4 cut(s) 559, 571, 583, 1012
CviAII CATG 8 cut(s) 247, 301, 574, 705, 721, 768, 1034, 1074
CviQI GTAC 4 cut(s) 559, 571, 583, 1012
DdeI CTNAG 1 cut(s) 698
DinI GGCGCC 1 cut(s) 452
DpnI GATC 4 cut(s) 5, 710, 805, 1052
DpnII GATC 4 cut(s) 3, 708, 803, 1050
DrdI GACNNNNNNGTC 1 cut(s) 250
DriI GACNNNNNGTC 1 cut(s) 910
DseDI GACNNNNNNGTC 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 760
Eam1105I GACNNNNNGTC 1 cut(s) 910
EciI GGCGGA 2 cut(s) 209, 514
Ecl136II GAGCTC 1 cut(s) 775
Eco130I CCWWGG 1 cut(s) 426
Eco147I AGGCCT 1 cut(s) 425
Eco24I GRGCYC 3 cut(s) 30, 648, 777
Eco47I GGWCC 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 775
Eco57I CTGAAG 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 775
EcoNI CCTNNNNNAGG 1 cut(s) 869
EcoO109I RGGNCCY 3 cut(s) 624, 644, 862
EcoRII CCWGG 6 cut(s) 384, 474, 537, 626, 820, 826
EcoT14I CCWWGG 1 cut(s) 426
EcoT38I GRGCYC 3 cut(s) 30, 648, 777
EgeI GGCGCC 1 cut(s) 452
EheI GGCGCC 1 cut(s) 452
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 8 cut(s) 250, 304, 577, 708, 724, 771, 1037, 1077
FatI CATG 8 cut(s) 246, 300, 573, 704, 720, 767, 1033, 1073
FauI CCCGC 1 cut(s) 37
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 3 cut(s) 126, 516, 878
Fnu4HI GCNGC 3 cut(s) 21, 454, 510
FokI GGATG 2 cut(s) 536, 554
FriOI GRGCYC 3 cut(s) 30, 648, 777
Fsp4HI GCNGC 3 cut(s) 21, 454, 510
FspBI CTAG 1 cut(s) 297
GlaI GCGC 1 cut(s) 452
GluI GCNGC 3 cut(s) 21, 454, 510
GsuI CTGGAG 2 cut(s) 30, 649
HaeII RGCGCY 1 cut(s) 454
HapII CCGG 3 cut(s) 12, 270, 763
HgaI GACGC 2 cut(s) 21, 908
HhaI GCGC 1 cut(s) 453
Hin1I GRCGYC 2 cut(s) 451, 900
Hin1II CATG 8 cut(s) 250, 304, 577, 708, 724, 771, 1037, 1077
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HincII GTYRAC 1 cut(s) 879
HindII GTYRAC 1 cut(s) 879
HindIII AAGCTT 1 cut(s) 1062
HinfI GANTC 4 cut(s) 229, 338, 875, 1078
HpaII CCGG 3 cut(s) 12, 270, 763
HphI GGTGA 3 cut(s) 64, 199, 496
Hpy166II GTNNAC 6 cut(s) 127, 517, 682, 691, 839, 879
Hpy188I TCNGA 2 cut(s) 37, 79
Hpy188III TCNNGA 4 cut(s) 7, 199, 463, 1034
Hpy8I GTNNAC 6 cut(s) 127, 517, 682, 691, 839, 879
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 3 cut(s) 84, 102, 415
HpyCH4III ACNGT 5 cut(s) 324, 716, 797, 889, 910
HpyCH4IV ACGT 3 cut(s) 123, 153, 358
HpyCH4V TGCA 4 cut(s) 20, 356, 653, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 302
HpyF3I CTNAG 1 cut(s) 698
HpySE526I ACGT 3 cut(s) 123, 153, 358
Hsp92I GRCGYC 2 cut(s) 451, 900
Hsp92II CATG 8 cut(s) 250, 304, 577, 708, 724, 771, 1037, 1077
HspAI GCGC 1 cut(s) 451
KasI GGCGCC 1 cut(s) 450
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 708, 803, 1050
LmnI GCTCC 2 cut(s) 630, 772
Lsp1109I GCAGC 1 cut(s) 32
LweI GCATC 3 cut(s) 314, 532, 946
MaeI CTAG 1 cut(s) 297
MaeII ACGT 3 cut(s) 123, 153, 358
MaeIII GTNAC 1 cut(s) 154
MalI GATC 4 cut(s) 5, 710, 805, 1052
MbiI CCGCTC 1 cut(s) 555
MboI GATC 4 cut(s) 3, 708, 803, 1050
MboII GAAGA 4 cut(s) 253, 287, 526, 1060
MfeI CAATTG 1 cut(s) 1042
MflI RGATCY 2 cut(s) 803, 1050
MhlI GDGCHC 3 cut(s) 30, 648, 777
MluCI AATT 2 cut(s) 82, 1042
Mly113I GGCGCC 1 cut(s) 451
MlyI GAGTC 3 cut(s) 223, 332, 884
MmeI TCCRAC 3 cut(s) 15, 837, 920
MnlI CCTC 9 cut(s) 54, 206, 227, 328, 463, 504, 853, 865, 982
MroXI GAANNNNTTC 1 cut(s) 835
MseI TTAA 2 cut(s) 567, 927
MspA1I CMGCKG 2 cut(s) 50, 512
MspI CCGG 3 cut(s) 12, 270, 763
MspR9I CCNGG 6 cut(s) 386, 476, 539, 628, 822, 828
MunI CAATTG 1 cut(s) 1042
MvaI CCWGG 6 cut(s) 386, 476, 539, 628, 822, 828
MvnI CGCG 2 cut(s) 32, 456
MwoI GCNNNNNNNGC 2 cut(s) 29, 302
NarI GGCGCC 1 cut(s) 451
NdeII GATC 4 cut(s) 3, 708, 803, 1050
NheI GCTAGC 1 cut(s) 296
NlaIII CATG 8 cut(s) 250, 304, 577, 708, 724, 771, 1037, 1077
NlaIV GGNNCC 5 cut(s) 268, 452, 625, 646, 805
NmeAIII GCCGAG 5 cut(s) 171, 320, 553, 822, 1034
PagI TCATGA 1 cut(s) 1033
PceI AGGCCT 1 cut(s) 425
PcsI WCGNNNNNNNCGW 2 cut(s) 849, 906
PdmI GAANNNNTTC 1 cut(s) 835
PfeI GAWTC 1 cut(s) 1078
PflFI GACNNNGTC 1 cut(s) 232
PflMI CCANNNNNTGG 2 cut(s) 758, 833
PfoI TCCNGGA 1 cut(s) 537
PkrI GCNGC 3 cut(s) 22, 455, 511
PleI GAGTC 3 cut(s) 223, 332, 883
PluTI GGCGCC 1 cut(s) 454
PpsI GAGTC 3 cut(s) 223, 332, 883
Ppu21I YACGTR 1 cut(s) 359
PshBI ATTAAT 1 cut(s) 927
Psp124BI GAGCTC 1 cut(s) 777
Psp1406I AACGTT 1 cut(s) 153
Psp6I CCWGG 6 cut(s) 384, 474, 537, 626, 820, 826
PspGI CCWGG 6 cut(s) 384, 474, 537, 626, 820, 826
PspN4I GGNNCC 5 cut(s) 268, 452, 625, 646, 805
PspOMI GGGCCC 1 cut(s) 644
PsrI GAACNNNNNNTAC 2 cut(s) 674, 706
PsuI RGATCY 2 cut(s) 803, 1050
PsyI GACNNNGTC 1 cut(s) 232
RsaI GTAC 4 cut(s) 560, 572, 584, 1013
RsaNI GTAC 4 cut(s) 559, 571, 583, 1012
SacI GAGCTC 1 cut(s) 777
SalI GTCGAC 1 cut(s) 877
SaqAI TTAA 2 cut(s) 567, 927
SatI GCNGC 3 cut(s) 21, 454, 510
Sau3AI GATC 4 cut(s) 3, 708, 803, 1050
ScaI AGTACT 1 cut(s) 584
SchI GAGTC 3 cut(s) 223, 332, 884
ScrFI CCNGG 6 cut(s) 386, 476, 539, 628, 822, 828
SduI GDGCHC 3 cut(s) 30, 648, 777
SfaNI GCATC 3 cut(s) 314, 532, 946
SfcI CTRYAG 2 cut(s) 345, 813
SfoI GGCGCC 1 cut(s) 452
SinI GGWCC 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 990
SmoI CTYRAG 1 cut(s) 990
Sse9I AATT 2 cut(s) 82, 1042
SseBI AGGCCT 1 cut(s) 425
SspDI GGCGCC 1 cut(s) 450
SspI AATATT 1 cut(s) 637
SspMI CTAG 1 cut(s) 297
SstI GAGCTC 1 cut(s) 777
StuI AGGCCT 1 cut(s) 425
StyD4I CCNGG 6 cut(s) 384, 474, 537, 626, 820, 826
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 5 cut(s) 324, 716, 797, 889, 910
TaiI ACGT 3 cut(s) 126, 156, 361
TaqI TCGA 3 cut(s) 200, 612, 878
TasI AATT 2 cut(s) 82, 1042
TatI WGTACW 2 cut(s) 570, 582
TauI GCSGC 2 cut(s) 456, 512
TfiI GAWTC 1 cut(s) 1078
Tru1I TTAA 2 cut(s) 567, 927
Tru9I TTAA 2 cut(s) 567, 927
TscAI CASTG 1 cut(s) 243
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 4 cut(s) 195, 322, 434, 1022
TspGWI ACGGA 2 cut(s) 222, 676
TspRI CASTG 1 cut(s) 243
Tth111I GACNNNGTC 1 cut(s) 232
Van91I CCANNNNNTGG 2 cut(s) 758, 833
VpaK11BI GGWCC 1 cut(s) 382
VspI ATTAAT 1 cut(s) 927
XagI CCTNNNNNAGG 1 cut(s) 869
XmiI GTMKAC 3 cut(s) 126, 516, 878
XmnI GAANNNNTTC 1 cut(s) 835
XspI CTAG 1 cut(s) 297
ZrmI AGTACT 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.