MD15G1157100.v1.1

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
11665551 .. 11666690
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1157100.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGGCAATCCACAACTTTTTGCATATTCTCTTGCTGTTATGTTCCTTGATGATCATAAACACCGGCTGCACGGCCGAGGTTCCACCGGCGGTGAAAGCGGCATATTATCCTTCGTTTTCGCCGGATTTCCCACCTTCAGCCATAAACACATCATTCTTCACCCACATTTTCTATGCTTTTCTTGTGCCAAATAATGTCACTTTCAAATTTGACTTGCCAAATTCTACGGCCTTGCTCCTTTCCAATTTCATCACCACTCTCCGCCACAAAACTCCGCCGGTGAAGACCCTGTTGTCCATCGGCGGCGCAGCAGACGGCGTGGTACTGCCATTCGTCTTTGCTCGCTTGGCCTCAAAAGCTTCGTCACGTTCACAATTCATACAATCTGCCATAGAGGTTGCACGTAAGTTTGGGTTTGATGGGCTGGACCTTGATTGGGAGTTCCCTCAAAGCCCAAAAGAAATGAAGGATTTGAGCCACTTGCTAAAAGAATGGCACCACGAGCTCAAGAAGGAGTCCAAATCCACGGCCCGCCCTCCGCTACTCCTCACCGCCGCCGTTTACTTCTCGGCCGACTTCTTGTTGGACGCCGTCCCCCGATCGTACCCGGCGTCGTCACTAAAAAAGTACTTGGACTGGATCAATCCAATGTGCTACGACTACAACGGGGCTTGGAGCAACACCACAGGGCCCAATGCAGCATTGTTGAACCCGAATAGTAACGTAAACTCAATATATGGGCTTAAGTCATGGATCAAGGCCGGGATACCCCCGGTAAAATTGGTTATGGGCCTGGCCCTCTACGGCCGGTCATGGGAGCTCCAAAACCCGAAAAATCACAGCTTTGGAGCCACCGCTATTGGGCCAGGCCCAGGAGCAGGGATGTTGTTTTACCACCAAGTCGAGACGCTACTAAACCAATCGGGCGCAACTGTAGTGTATGACGTGGACACTATATCCGTGTATTCGTACAACGGGTCCACGTGGGTTTCGTACGATGATGCCTTCACCACGGCCGCGAAGATAGTGTTTGCTCAGGCCCTTGGGCTTCGTGGATACTTCTTTTGGGCCCTTAGTTTTGATAGCGACTGGAAGATTTCGGCCCAAGGTAAACTGACCCACTTTTCCATGATAATTTGA

Protein Analysis

380

Amino Acids

41.87

Weight (kDa)

8.55

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 34 - 361 1.3e-67 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 495
AccII CGCG 1 cut(s) 1019
AclWI GGATC 2 cut(s) 647, 761
AcoI YGGCCR 4 cut(s) 72, 570, 805, 1014
AcsI RAATTY 2 cut(s) 206, 220
AcuI CTGAAG 1 cut(s) 120
AcvI CACGTG 1 cut(s) 984
AcyI GRCGYC 2 cut(s) 588, 611
AfaI GTAC 5 cut(s) 324, 605, 629, 971, 995
AfiI CCNNNNNNNGG 5 cut(s) 436, 814, 861, 872, 878
AflII CTTAAG 1 cut(s) 743
AgsI TTSAA 2 cut(s) 205, 709
AjiI CACGTC 1 cut(s) 946
AjnI CCWGG 3 cut(s) 792, 865, 871
AluBI AGCT 4 cut(s) 359, 505, 820, 843
AluI AGCT 4 cut(s) 359, 505, 820, 843
Alw21I GWGCWC 2 cut(s) 507, 822
Alw26I GTCTC 1 cut(s) 899
AlwI GGATC 2 cut(s) 647, 761
ApaI GGGCCC 2 cut(s) 693, 1072
ApeKI GCWGC 3 cut(s) 66, 308, 698
ApoI RAATTY 2 cut(s) 206, 220
ArsI GACNNNNNNTTYG 2 cut(s) 347, 379
AspLEI GCGC 2 cut(s) 308, 929
AsuC2I CCSGG 3 cut(s) 608, 763, 773
AsuHPI GGTGA 6 cut(s) 103, 151, 244, 292, 541, 1000
AvaII GGWCC 2 cut(s) 427, 978
BaeGI GKGCMC 2 cut(s) 693, 1072
BanI GGYRCC 1 cut(s) 495
BanII GRGCYC 4 cut(s) 507, 693, 822, 1072
BauI CACGAG 1 cut(s) 500
BbrPI CACGTG 1 cut(s) 984
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 2 cut(s) 507, 822
BbvI GCAGC 3 cut(s) 53, 320, 710
BccI CCATC 2 cut(s) 305, 413
BceAI ACGGC 8 cut(s) 87, 243, 331, 542, 543, 575, 820, 1029
BciT130I CCWGG 3 cut(s) 794, 867, 873
BciVI GTATCC 2 cut(s) 759, 1049
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 3 cut(s) 608, 763, 773
BcoDI GTCTC 1 cut(s) 899
BfmI CTRYAG 1 cut(s) 933
BfrI CTTAAG 1 cut(s) 743
BfuI GTATCC 2 cut(s) 759, 1049
BisI GCNGC 7 cut(s) 67, 99, 304, 309, 555, 699, 1017
BlsI GCNGC 7 cut(s) 68, 100, 305, 310, 556, 700, 1018
BmcAI AGTACT 1 cut(s) 629
Bme1390I CCNGG 6 cut(s) 608, 763, 773, 794, 867, 873
Bme18I GGWCC 2 cut(s) 427, 978
BmgBI CACGTC 1 cut(s) 946
BmiI GGNNCC 6 cut(s) 81, 497, 691, 850, 979, 1070
BmrFI CCNGG 6 cut(s) 608, 763, 773, 794, 867, 873
BmsI GCATC 1 cut(s) 991
BpiI GAAGAC 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 1035
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 3 cut(s) 608, 763, 773
BsaAI YACGTR 2 cut(s) 404, 984
BsaHI GRCGYC 2 cut(s) 588, 611
BsaJI CCNNGG 7 cut(s) 75, 525, 771, 871, 1011, 1042, 1105
Bsc4I CCNNNNNNNGG 5 cut(s) 436, 814, 861, 872, 878
Bse118I RCCGGY 4 cut(s) 62, 85, 277, 807
Bse1I ACTGG 2 cut(s) 641, 1094
BseBI CCWGG 3 cut(s) 794, 867, 873
BseDI CCNNGG 7 cut(s) 75, 525, 771, 871, 1011, 1042, 1105
BseGI GGATG 1 cut(s) 888
BseLI CCNNNNNNNGG 5 cut(s) 436, 814, 861, 872, 878
BseMII CTCAG 1 cut(s) 1049
BseNI ACTGG 2 cut(s) 641, 1094
BseRI GAGGAG 1 cut(s) 536
BseSI GKGCMC 2 cut(s) 693, 1072
BseX3I CGGCCG 4 cut(s) 72, 570, 805, 1014
BseXI GCAGC 3 cut(s) 53, 320, 710
BsgI GTGCAG 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 1019
Bsh1285I CGRYCG 5 cut(s) 75, 573, 602, 808, 1017
BshNI GGYRCC 1 cut(s) 495
BsiEI CGRYCG 5 cut(s) 75, 573, 602, 808, 1017
BsiHKAI GWGCWC 2 cut(s) 507, 822
BsiSI CCGG 8 cut(s) 63, 86, 122, 278, 608, 762, 773, 808
BsiWI CGTACG 1 cut(s) 993
BslFI GGGAC 1 cut(s) 578
BslI CCNNNNNNNGG 5 cut(s) 436, 814, 861, 872, 878
BsmAI GTCTC 1 cut(s) 899
BsmBI CGTCTC 1 cut(s) 899
BsmFI GGGAC 1 cut(s) 578
Bsp120I GGGCCC 2 cut(s) 689, 1068
Bsp1286I GDGCHC 4 cut(s) 507, 693, 822, 1072
Bsp143I GATC 4 cut(s) 51, 599, 639, 753
BspCNI CTCAG 1 cut(s) 1048
BspFNI CGCG 1 cut(s) 1019
BspLI GGNNCC 6 cut(s) 81, 497, 691, 850, 979, 1070
BspPI GGATC 2 cut(s) 647, 761
BspT107I GGYRCC 1 cut(s) 495
BspTI CTTAAG 1 cut(s) 743
BsrFI RCCGGY 4 cut(s) 62, 85, 277, 807
BsrI ACTGG 2 cut(s) 641, 1094
BssAI RCCGGY 4 cut(s) 62, 85, 277, 807
BssECI CCNNGG 7 cut(s) 75, 525, 771, 871, 1011, 1042, 1105
BssMI GATC 4 cut(s) 51, 599, 639, 753
BssNI GRCGYC 2 cut(s) 588, 611
BssSI CACGAG 1 cut(s) 500
BssT1I CCWWGG 2 cut(s) 1042, 1105
Bst2BI CACGAG 1 cut(s) 500
Bst2UI CCWGG 3 cut(s) 794, 867, 873
Bst4CI ACNGT 1 cut(s) 934
BstACI GRCGYC 2 cut(s) 588, 611
BstAFI CTTAAG 1 cut(s) 743
BstBAI YACGTR 2 cut(s) 404, 984
BstC8I GCNNGC 2 cut(s) 343, 532
BstDEI CTNAG 2 cut(s) 1035, 1073
BstDSI CCRYGG 2 cut(s) 525, 1011
BstF5I GGATG 1 cut(s) 888
BstFNI CGCG 1 cut(s) 1019
BstHHI GCGC 2 cut(s) 308, 929
BstKTI GATC 4 cut(s) 54, 602, 642, 756
BstMAI GTCTC 1 cut(s) 899
BstMBI GATC 4 cut(s) 51, 599, 639, 753
BstMCI CGRYCG 5 cut(s) 75, 573, 602, 808, 1017
BstMWI GCNNNNNNNGC 4 cut(s) 95, 347, 356, 502
BstNI CCWGG 3 cut(s) 794, 867, 873
BstSCI CCNGG 6 cut(s) 606, 761, 771, 792, 865, 871
BstSFI CTRYAG 1 cut(s) 933
BstSLI GKGCMC 2 cut(s) 693, 1072
BstUI CGCG 1 cut(s) 1019
BstV1I GCAGC 3 cut(s) 53, 320, 710
BstV2I GAAGAC 1 cut(s) 290
BstZI CGGCCG 4 cut(s) 72, 570, 805, 1014
BsuI GTATCC 2 cut(s) 759, 1049
BtgI CCRYGG 2 cut(s) 525, 1011
BtrI CACGTC 1 cut(s) 946
BtsCI GGATG 1 cut(s) 888
Cac8I GCNNGC 2 cut(s) 343, 532
CfoI GCGC 2 cut(s) 308, 929
Cfr10I RCCGGY 4 cut(s) 62, 85, 277, 807
CseI GACGC 3 cut(s) 596, 600, 916
Csp6I GTAC 5 cut(s) 323, 604, 628, 970, 994
CspCI CAANNNNNGTGG 2 cut(s) 841, 876
CviAII CATG 3 cut(s) 750, 813, 1129
CviQI GTAC 5 cut(s) 323, 604, 628, 970, 994
DdeI CTNAG 2 cut(s) 1035, 1073
DpnI GATC 4 cut(s) 53, 601, 641, 755
DpnII GATC 4 cut(s) 51, 599, 639, 753
DrdI GACNNNNNNGTC 1 cut(s) 292
DseDI GACNNNNNNGTC 1 cut(s) 292
EaeI YGGCCR 4 cut(s) 72, 570, 805, 1014
EagI CGGCCG 4 cut(s) 72, 570, 805, 1014
EciI GGCGGA 2 cut(s) 251, 264
Ecl136II GAGCTC 2 cut(s) 505, 820
EclXI CGGCCG 4 cut(s) 72, 570, 805, 1014
Eco130I CCWWGG 2 cut(s) 1042, 1105
Eco24I GRGCYC 4 cut(s) 507, 693, 822, 1072
Eco47I GGWCC 2 cut(s) 427, 978
Eco52I CGGCCG 4 cut(s) 72, 570, 805, 1014
Eco53kI GAGCTC 2 cut(s) 505, 820
Eco57I CTGAAG 1 cut(s) 120
Eco72I CACGTG 1 cut(s) 984
EcoICRI GAGCTC 2 cut(s) 505, 820
EcoO109I RGGNCCY 3 cut(s) 689, 1039, 1069
EcoRII CCWGG 3 cut(s) 792, 865, 871
EcoT14I CCWWGG 2 cut(s) 1042, 1105
EcoT38I GRGCYC 4 cut(s) 507, 693, 822, 1072
ErhI CCWWGG 2 cut(s) 1042, 1105
Esp3I CGTCTC 1 cut(s) 899
FaeI CATG 3 cut(s) 753, 816, 1132
FaqI GGGAC 1 cut(s) 578
FatI CATG 3 cut(s) 749, 812, 1128
FauI CCCGC 1 cut(s) 539
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 7 cut(s) 67, 99, 304, 309, 555, 699, 1017
FokI GGATG 1 cut(s) 895
FriOI GRGCYC 4 cut(s) 507, 693, 822, 1072
Fsp4HI GCNGC 7 cut(s) 67, 99, 304, 309, 555, 699, 1017
GlaI GCGC 2 cut(s) 307, 928
GluI GCNGC 7 cut(s) 67, 99, 304, 309, 555, 699, 1017
HapII CCGG 8 cut(s) 63, 86, 122, 278, 608, 762, 773, 808
HgaI GACGC 3 cut(s) 596, 600, 916
HhaI GCGC 2 cut(s) 308, 929
Hin1I GRCGYC 2 cut(s) 588, 611
Hin1II CATG 3 cut(s) 753, 816, 1132
Hin6I GCGC 2 cut(s) 306, 927
HinP1I GCGC 2 cut(s) 306, 927
HindIII AAGCTT 1 cut(s) 357
HinfI GANTC 1 cut(s) 515
HpaII CCGG 8 cut(s) 63, 86, 122, 278, 608, 762, 773, 808
HphI GGTGA 6 cut(s) 103, 151, 244, 292, 541, 1000
Hpy166II GTNNAC 6 cut(s) 371, 562, 727, 949, 981, 1112
Hpy188III TCNNGA 2 cut(s) 508, 904
Hpy8I GTNNAC 6 cut(s) 371, 562, 727, 949, 981, 1112
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 5 cut(s) 120, 144, 460, 505, 1015
HpyCH4III ACNGT 1 cut(s) 934
HpyCH4IV ACGT 5 cut(s) 367, 403, 723, 945, 983
HpyCH4V TGCA 4 cut(s) 22, 69, 401, 698
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 347, 356, 502
HpyF3I CTNAG 2 cut(s) 1035, 1073
HpySE526I ACGT 5 cut(s) 367, 403, 723, 945, 983
Hsp92I GRCGYC 2 cut(s) 588, 611
Hsp92II CATG 3 cut(s) 753, 816, 1132
HspAI GCGC 2 cut(s) 306, 927
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 4 cut(s) 51, 599, 639, 753
LmnI GCTCC 6 cut(s) 240, 675, 817, 825, 848, 875
Lsp1109I GCAGC 3 cut(s) 53, 320, 710
LweI GCATC 1 cut(s) 991
MaeII ACGT 5 cut(s) 367, 403, 723, 945, 983
MaeIII GTNAC 4 cut(s) 196, 363, 615, 719
MalI GATC 4 cut(s) 53, 601, 641, 755
MboI GATC 4 cut(s) 51, 599, 639, 753
MboII GAAGA 4 cut(s) 148, 295, 1033, 1105
MhlI GDGCHC 4 cut(s) 507, 693, 822, 1072
MluCI AATT 6 cut(s) 206, 220, 244, 374, 779, 1134
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 7 cut(s) 70, 361, 388, 456, 546, 557, 809
MseI TTAA 1 cut(s) 744
MspCI CTTAAG 1 cut(s) 743
MspI CCGG 8 cut(s) 63, 86, 122, 278, 608, 762, 773, 808
MspR9I CCNGG 6 cut(s) 608, 763, 773, 794, 867, 873
MvaI CCWGG 3 cut(s) 794, 867, 873
MvnI CGCG 1 cut(s) 1019
MwoI GCNNNNNNNGC 4 cut(s) 95, 347, 356, 502
NciI CCSGG 3 cut(s) 608, 763, 773
NdeII GATC 4 cut(s) 51, 599, 639, 753
NlaIII CATG 3 cut(s) 753, 816, 1132
NlaIV GGNNCC 6 cut(s) 81, 497, 691, 850, 979, 1070
NmeAIII GCCGAG 2 cut(s) 100, 548
NmuCI GTSAC 3 cut(s) 196, 363, 615
PcsI WCGNNNNNNNCGW 2 cut(s) 608, 989
Pfl23II CGTACG 1 cut(s) 993
PflFI GACNNNGTC 1 cut(s) 590
PkrI GCNGC 7 cut(s) 68, 100, 305, 310, 556, 700, 1018
Ple19I CGATCG 1 cut(s) 602
PleI GAGTC 1 cut(s) 523
PmaCI CACGTG 1 cut(s) 984
PmlI CACGTG 1 cut(s) 984
PpsI GAGTC 1 cut(s) 523
Ppu21I YACGTR 2 cut(s) 404, 984
Psp124BI GAGCTC 2 cut(s) 507, 822
Psp6I CCWGG 3 cut(s) 792, 865, 871
PspCI CACGTG 1 cut(s) 984
PspGI CCWGG 3 cut(s) 792, 865, 871
PspLI CGTACG 1 cut(s) 993
PspN4I GGNNCC 6 cut(s) 81, 497, 691, 850, 979, 1070
PspOMI GGGCCC 2 cut(s) 689, 1068
PsyI GACNNNGTC 1 cut(s) 590
PvuI CGATCG 1 cut(s) 602
RsaI GTAC 5 cut(s) 324, 605, 629, 971, 995
RsaNI GTAC 5 cut(s) 323, 604, 628, 970, 994
SacI GAGCTC 2 cut(s) 507, 822
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 7 cut(s) 67, 99, 304, 309, 555, 699, 1017
Sau3AI GATC 4 cut(s) 51, 599, 639, 753
ScaI AGTACT 1 cut(s) 629
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 6 cut(s) 608, 763, 773, 794, 867, 873
SduI GDGCHC 4 cut(s) 507, 693, 822, 1072
SfaNI GCATC 1 cut(s) 991
SfcI CTRYAG 1 cut(s) 933
SgrAI CRCCGGYG 2 cut(s) 85, 277
SinI GGWCC 2 cut(s) 427, 978
SmlI CTYRAG 2 cut(s) 506, 743
SmoI CTYRAG 2 cut(s) 506, 743
Sse9I AATT 6 cut(s) 206, 220, 244, 374, 779, 1134
SstI GAGCTC 2 cut(s) 507, 822
StyD4I CCNGG 6 cut(s) 606, 761, 771, 792, 865, 871
StyI CCWWGG 2 cut(s) 1042, 1105
TaaI ACNGT 1 cut(s) 934
TaiI ACGT 5 cut(s) 370, 406, 726, 948, 986
TaqI TCGA 1 cut(s) 903
TasI AATT 6 cut(s) 206, 220, 244, 374, 779, 1134
TatI WGTACW 1 cut(s) 627
TauI GCSGC 4 cut(s) 101, 306, 557, 1019
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TseFI GTSAC 3 cut(s) 196, 363, 615
TseI GCWGC 3 cut(s) 66, 308, 698
Tsp45I GTSAC 3 cut(s) 196, 363, 615
TspDTI ATGAA 3 cut(s) 238, 367, 479
TspGWI ACGGA 1 cut(s) 949
Tth111I GACNNNGTC 1 cut(s) 590
Vha464I CTTAAG 1 cut(s) 743
VpaK11BI GGWCC 2 cut(s) 427, 978
XapI RAATTY 2 cut(s) 206, 220
ZrmI AGTACT 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.