Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013730

Physical Location & Seq

Genomic Coordinates Forward (+)

1190318 .. 1191524

Gene Structure 1207 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG016600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGCCAAGCCTCAACAACTTTGGGCATCTTATTATTCTTTTTCTCCTATGTTGCTTGACGATGATCACGACCGTAAGTGCGGCAGAGTCCTTGTCGGAAAACCCTCCGGTGGTGAAATCAGGCTATTATCCACCTTCGGATAATTTCCCACCTTCAGCCATAGACACTACTTTCTTTACTCACGTCTACTATGCCTTTCTTGTGCCGAGCAACGTTACATTTAGATTTGAGCTGTCAAATGAAACGGCTTTACTCCTCTCGAACTTCACCACCGCCCTCCGCCACAAGACTCCGCTTGTGAAGACTATGTTGTCCATAGGTGGCGGTGCCGGAGAAGAAGTGGCACACATCTTTGCTAGCATGGCATCAAACCCGTCCTCACGGTCAAACTTCATTGACTCGGCTATAGAAGTTGCACGTAAGTTTGGGTTTGATGGGCTGGACCTGGACTGGGAATACCCTGAAAGCCCAATAGAAATGAAGGCCTTGGGCCACTTGCTAAAACAATGGCGCCGCGAAATCAAGAAAGAGGCCCAGGCCACAAATAGCCACCCTCTACTGCTCACCGCCGCCGTCTACTTCTCCGCCGAGTTCTTCTTGGATGCCGTTATCCGCTCGTACCCGATTAAGTACATGGAAAAGTACTTGGATTGGGCCAATGTAATGTGCTTCGACTATCACGGGGCTTGGAGCAATATTACAGGGCCCAATGCACCATTATTTGACCCAAATAGTAATGTGAACTCCGTCTACGGGCTTAGGTCATGGATCAACGGTGGCATGACCCCAAACAAGCTCGTAATGGGCTTGCCACTCTATGGCCGGACATGGGAGCTCAAAGACCCTAAAGATAACGGTATTGGATCCATTGCTATAGGCCCAGGCCCAGGAAATGGTTCACTTGGCTTCAACGAGTTGGAGGCCCTAAATGACGAGTCGAGCGCCACCGTGGTATATGACGCCGACACCGTATCGGTATATTCTGTTAATGGGTCGAGTTGGATTGCATTTGATGATGCCTTTACAACAACCTCCAAGATAGGGTTTGCTCAAGCTCTTGGGCTTCGTGGGTACTTCTTTTGGGCCATCATTCATGATAACAATTGGAAGATCTCGGCCCAAGGTAATATACCTGACCAAATTACTATCCACTACTTTTTTTCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0007586 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0008843 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016192 GO:0016787 GO:0016798 GO:0017144 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032501 GO:0032940 GO:0034774 GO:0035580 GO:0036230 GO:0042119 GO:0042581 GO:0042737 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044237 GO:0044245 GO:0044248 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046348 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060205 GO:0070013 GO:0070820 GO:0071704 GO:0097367 GO:0097708 GO:0099503 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1904724

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

389

Amino Acids

43.04

Weight (kDa)

5.17

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	41 - 365	3.7e-66	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013730)

Species	Orthologous Gene IDs
malus_domestica	MD15G1156400.v1.1 MD15G1156500.v1.1 MD15G1156800.v1.1 MD15G1157100.v1.1
prunus_persica	Prupe.7G258400_v2.0.a1
pyrus_communis	pycom15g14090
rosa_chinensis	RchiOBHm_Chr2g0086331
rosa_laevigata	RLG00000015750
rosa_multiflora	Rmu_co8445245.1_g000001 Rmu_sc0004510.1_g000019 Rmu_sc0005127.1_g000013
rosa_roxburghii	Rroxscaffold_2G00154690
rosa_rugosa	Rorug01G0466600
rosa_samantha	Rh2AG016800 Rh2BG016600 Rh2CG017700 Rh2DG018400
rosa_wichuraiana	Rw2G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	310
AccB1I	GGYRCC	2 cut(s)	326, 510
AccB7I	CCANNNNNTGG	2 cut(s)	818, 893
AccBSI	CCGCTC	1 cut(s)	615
AccI	GTMKAC	3 cut(s)	186, 576, 750
AccII	CGCG	1 cut(s)	516
AclI	AACGTT	1 cut(s)	213
AclWI	GGATC	3 cut(s)	776, 858, 871
AcoI	YGGCCR	1 cut(s)	820
AcuI	CTGAAG	1 cut(s)	138
AcyI	GRCGYC	2 cut(s)	511, 960
AfaI	GTAC	4 cut(s)	620, 632, 644, 1073
AfiI	CCNNNNNNNGG	8 cut(s)	109, 451, 753, 818, 829, 887, 893, 1041
AgsI	TTSAA	1 cut(s)	910
AjiI	CACGTC	1 cut(s)	184
AjnI	CCWGG	4 cut(s)	444, 534, 880, 886
AluBI	AGCT	4 cut(s)	232, 796, 835, 1055
AluI	AGCT	4 cut(s)	232, 796, 835, 1055
Alw21I	GWGCWC	1 cut(s)	837
AlwI	GGATC	3 cut(s)	776, 858, 871
ApaI	GGGCCC	1 cut(s)	708
Asp700I	GAANNNNTTC	1 cut(s)	895
AspLEI	GCGC	2 cut(s)	513, 944
AsuHPI	GGTGA	3 cut(s)	124, 259, 556
AsuNHI	GCTAGC	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	442
BaeGI	GKGCMC	1 cut(s)	708
BamHI	GGATCC	1 cut(s)	863
BanI	GGYRCC	2 cut(s)	326, 510
BanII	GRGCYC	2 cut(s)	708, 837
BbsI	GAAGAC	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	837
BccI	CCATC	2 cut(s)	428, 1094
BceAI	ACGGC	3 cut(s)	261, 557, 590
BciT130I	CCWGG	4 cut(s)	446, 536, 882, 888
BclI	TGATCA	1 cut(s)	63
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	2 cut(s)	405, 873
BfoI	RGCGCY	2 cut(s)	514, 945
BglII	AGATCT	1 cut(s)	1110
BisI	GCNGC	3 cut(s)	81, 514, 570
BlsI	GCNGC	3 cut(s)	82, 515, 571
BmcAI	AGTACT	1 cut(s)	644
Bme1390I	CCNGG	4 cut(s)	446, 536, 882, 888
Bme18I	GGWCC	1 cut(s)	442
BmgBI	CACGTC	1 cut(s)	184
BmiI	GGNNCC	4 cut(s)	328, 512, 706, 865
BmrFI	CCNGG	4 cut(s)	446, 536, 882, 888
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	4 cut(s)	34, 374, 592, 1006
BmtI	GCTAGC	1 cut(s)	360
BmuI	ACTGGG	1 cut(s)	460
BpiI	GAAGAC	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	758
BpuEI	CTTGAG	1 cut(s)	1035
BsaAI	YACGTR	1 cut(s)	419
BsaHI	GRCGYC	2 cut(s)	511, 960
BsaJI	CCNNGG	6 cut(s)	486, 534, 880, 886, 948, 1120
BsaWI	WCCGGW	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	8 cut(s)	109, 451, 753, 818, 829, 887, 893, 1041
Bse1I	ACTGG	1 cut(s)	455
Bse3DI	GCAATG	1 cut(s)	867
BseBI	CCWGG	4 cut(s)	446, 536, 882, 888
BseDI	CCNNGG	6 cut(s)	486, 534, 880, 886, 948, 1120
BseGI	GGATG	1 cut(s)	607
BseLI	CCNNNNNNNGG	8 cut(s)	109, 451, 753, 818, 829, 887, 893, 1041
BseMI	GCAATG	1 cut(s)	867
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	708
Bsh1236I	CGCG	1 cut(s)	516
Bsh1285I	CGRYCG	1 cut(s)	72
BshNI	GGYRCC	2 cut(s)	326, 510
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	837
BsiSI	CCGG	3 cut(s)	107, 330, 823
BslI	CCNNNNNNNGG	8 cut(s)	109, 451, 753, 818, 829, 887, 893, 1041
Bsp120I	GGGCCC	1 cut(s)	704
Bsp1286I	GDGCHC	2 cut(s)	708, 837
Bsp143I	GATC	4 cut(s)	63, 768, 863, 1110
BspFNI	CGCG	1 cut(s)	516
BspHI	TCATGA	1 cut(s)	1093
BspLI	GGNNCC	4 cut(s)	328, 512, 706, 865
BspOI	GCTAGC	1 cut(s)	360
BspPI	GGATC	3 cut(s)	776, 858, 871
BspT107I	GGYRCC	2 cut(s)	326, 510
BsrBI	CCGCTC	1 cut(s)	615
BsrDI	GCAATG	1 cut(s)	867
BsrI	ACTGG	1 cut(s)	455
BssECI	CCNNGG	6 cut(s)	486, 534, 880, 886, 948, 1120
BssMI	GATC	4 cut(s)	63, 768, 863, 1110
BssNI	GRCGYC	2 cut(s)	511, 960
BssT1I	CCWWGG	2 cut(s)	486, 1120
Bst2UI	CCWGG	4 cut(s)	446, 536, 882, 888
Bst4CI	ACNGT	6 cut(s)	73, 384, 776, 857, 949, 970
BstACI	GRCGYC	2 cut(s)	511, 960
BstBAI	YACGTR	1 cut(s)	419
BstC8I	GCNNGC	2 cut(s)	358, 809
BstDEI	CTNAG	2 cut(s)	758, 1164
BstDSI	CCRYGG	1 cut(s)	948
BstF5I	GGATG	1 cut(s)	607
BstFNI	CGCG	1 cut(s)	516
BstH2I	RGCGCY	2 cut(s)	514, 945
BstHHI	GCGC	2 cut(s)	513, 944
BstKTI	GATC	4 cut(s)	66, 771, 866, 1113
BstMBI	GATC	4 cut(s)	63, 768, 863, 1110
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	4 cut(s)	446, 536, 882, 888
BstSCI	CCNGG	4 cut(s)	444, 534, 880, 886
BstSFI	CTRYAG	2 cut(s)	405, 873
BstSLI	GKGCMC	1 cut(s)	708
BstUI	CGCG	1 cut(s)	516
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	2 cut(s)	863, 1110
BstYI	RGATCY	2 cut(s)	863, 1110
BtgI	CCRYGG	1 cut(s)	948
BtrI	CACGTC	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	607
Cac8I	GCNNGC	2 cut(s)	358, 809
CciI	TCATGA	1 cut(s)	1093
CfoI	GCGC	2 cut(s)	513, 944
CseI	GACGC	1 cut(s)	968
Csp6I	GTAC	4 cut(s)	619, 631, 643, 1072
CviAII	CATG	6 cut(s)	361, 634, 765, 781, 828, 1094
CviQI	GTAC	4 cut(s)	619, 631, 643, 1072
DdeI	CTNAG	2 cut(s)	758, 1164
DinI	GGCGCC	1 cut(s)	512
DpnI	GATC	4 cut(s)	65, 770, 865, 1112
DpnII	GATC	4 cut(s)	63, 768, 863, 1110
DrdI	GACNNNNNNGTC	1 cut(s)	310
DseDI	GACNNNNNNGTC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	820
EciI	GGCGGA	2 cut(s)	269, 574
Ecl136II	GAGCTC	1 cut(s)	835
Eco130I	CCWWGG	2 cut(s)	486, 1120
Eco147I	AGGCCT	1 cut(s)	485
Eco24I	GRGCYC	2 cut(s)	708, 837
Eco47I	GGWCC	1 cut(s)	442
Eco53kI	GAGCTC	1 cut(s)	835
Eco57I	CTGAAG	1 cut(s)	138
EcoICRI	GAGCTC	1 cut(s)	835
EcoO109I	RGGNCCY	2 cut(s)	704, 922
EcoRII	CCWGG	4 cut(s)	444, 534, 880, 886
EcoT14I	CCWWGG	2 cut(s)	486, 1120
EcoT38I	GRGCYC	2 cut(s)	708, 837
EgeI	GGCGCC	1 cut(s)	512
EheI	GGCGCC	1 cut(s)	512
ErhI	CCWWGG	2 cut(s)	486, 1120
FaeI	CATG	6 cut(s)	364, 637, 768, 784, 831, 1097
FatI	CATG	6 cut(s)	360, 633, 764, 780, 827, 1093
FbaI	TGATCA	1 cut(s)	63
FblI	GTMKAC	3 cut(s)	186, 576, 750
Fnu4HI	GCNGC	3 cut(s)	81, 514, 570
FokI	GGATG	1 cut(s)	614
FriOI	GRGCYC	2 cut(s)	708, 837
Fsp4HI	GCNGC	3 cut(s)	81, 514, 570
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	2 cut(s)	512, 943
GluI	GCNGC	3 cut(s)	81, 514, 570
HaeII	RGCGCY	2 cut(s)	514, 945
HapII	CCGG	3 cut(s)	107, 330, 823
HgaI	GACGC	1 cut(s)	968
HhaI	GCGC	2 cut(s)	513, 944
Hin1I	GRCGYC	2 cut(s)	511, 960
Hin1II	CATG	6 cut(s)	364, 637, 768, 784, 831, 1097
Hin6I	GCGC	2 cut(s)	511, 942
HinP1I	GCGC	2 cut(s)	511, 942
HinfI	GANTC	4 cut(s)	86, 289, 398, 935
HpaII	CCGG	3 cut(s)	107, 330, 823
HphI	GGTGA	3 cut(s)	124, 259, 556
Hpy166II	GTNNAC	5 cut(s)	187, 577, 742, 751, 899
Hpy188I	TCNGA	2 cut(s)	97, 139
Hpy188III	TCNNGA	4 cut(s)	67, 259, 523, 1094
Hpy8I	GTNNAC	5 cut(s)	187, 577, 742, 751, 899
HpyAV	CCTTC	3 cut(s)	144, 162, 475
HpyCH4III	ACNGT	6 cut(s)	73, 384, 776, 857, 949, 970
HpyCH4IV	ACGT	3 cut(s)	183, 213, 418
HpyCH4V	TGCA	3 cut(s)	416, 713, 1007
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	2 cut(s)	758, 1164
HpySE526I	ACGT	3 cut(s)	183, 213, 418
Hsp92I	GRCGYC	2 cut(s)	511, 960
Hsp92II	CATG	6 cut(s)	364, 637, 768, 784, 831, 1097
HspAI	GCGC	2 cut(s)	511, 942
KasI	GGCGCC	1 cut(s)	510
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	4 cut(s)	63, 768, 863, 1110
LmnI	GCTCC	2 cut(s)	690, 832
LweI	GCATC	4 cut(s)	34, 374, 592, 1006
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	3 cut(s)	183, 213, 418
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	4 cut(s)	65, 770, 865, 1112
MbiI	CCGCTC	1 cut(s)	615
MboI	GATC	4 cut(s)	63, 768, 863, 1110
MboII	GAAGA	4 cut(s)	313, 347, 586, 1120
MfeI	CAATTG	1 cut(s)	1102
MflI	RGATCY	2 cut(s)	863, 1110
MhlI	GDGCHC	2 cut(s)	708, 837
MluCI	AATT	3 cut(s)	142, 1102, 1140
Mly113I	GGCGCC	1 cut(s)	511
MlyI	GAGTC	4 cut(s)	95, 283, 392, 944
MmeI	TCCRAC	3 cut(s)	75, 897, 980
MnlI	CCTC	9 cut(s)	20, 114, 266, 287, 388, 523, 564, 913, 1042
MroXI	GAANNNNTTC	1 cut(s)	895
MseI	TTAA	2 cut(s)	627, 987
MspI	CCGG	3 cut(s)	107, 330, 823
MspR9I	CCNGG	4 cut(s)	446, 536, 882, 888
MunI	CAATTG	1 cut(s)	1102
MvaI	CCWGG	4 cut(s)	446, 536, 882, 888
MvnI	CGCG	1 cut(s)	516
MwoI	GCNNNNNNNGC	1 cut(s)	362
NarI	GGCGCC	1 cut(s)	511
NdeII	GATC	4 cut(s)	63, 768, 863, 1110
NheI	GCTAGC	1 cut(s)	356
NlaIII	CATG	6 cut(s)	364, 637, 768, 784, 831, 1097
NlaIV	GGNNCC	4 cut(s)	328, 512, 706, 865
NmeAIII	GCCGAG	4 cut(s)	231, 380, 613, 1094
PagI	TCATGA	1 cut(s)	1093
PceI	AGGCCT	1 cut(s)	485
PcsI	WCGNNNNNNNCGW	2 cut(s)	65, 966
PdmI	GAANNNNTTC	1 cut(s)	895
PflMI	CCANNNNNTGG	2 cut(s)	818, 893
PkrI	GCNGC	3 cut(s)	82, 515, 571
PleI	GAGTC	4 cut(s)	94, 283, 392, 943
PluTI	GGCGCC	1 cut(s)	514
PpsI	GAGTC	4 cut(s)	94, 283, 392, 943
Ppu21I	YACGTR	1 cut(s)	419
Psp124BI	GAGCTC	1 cut(s)	837
Psp1406I	AACGTT	1 cut(s)	213
Psp6I	CCWGG	4 cut(s)	444, 534, 880, 886
PspGI	CCWGG	4 cut(s)	444, 534, 880, 886
PspN4I	GGNNCC	4 cut(s)	328, 512, 706, 865
PspOMI	GGGCCC	1 cut(s)	704
PsrI	GAACNNNNNNTAC	2 cut(s)	734, 766
PsuI	RGATCY	2 cut(s)	863, 1110
RsaI	GTAC	4 cut(s)	620, 632, 644, 1073
RsaNI	GTAC	4 cut(s)	619, 631, 643, 1072
SacI	GAGCTC	1 cut(s)	837
SaqAI	TTAA	2 cut(s)	627, 987
SatI	GCNGC	3 cut(s)	81, 514, 570
Sau3AI	GATC	4 cut(s)	63, 768, 863, 1110
ScaI	AGTACT	1 cut(s)	644
SchI	GAGTC	4 cut(s)	95, 283, 392, 944
ScrFI	CCNGG	4 cut(s)	446, 536, 882, 888
SduI	GDGCHC	2 cut(s)	708, 837
SfaNI	GCATC	4 cut(s)	34, 374, 592, 1006
SfcI	CTRYAG	2 cut(s)	405, 873
SfoI	GGCGCC	1 cut(s)	512
SinI	GGWCC	1 cut(s)	442
SmlI	CTYRAG	1 cut(s)	1050
SmoI	CTYRAG	1 cut(s)	1050
Sse9I	AATT	3 cut(s)	142, 1102, 1140
SseBI	AGGCCT	1 cut(s)	485
SspDI	GGCGCC	1 cut(s)	510
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	1 cut(s)	357
SstI	GAGCTC	1 cut(s)	837
StuI	AGGCCT	1 cut(s)	485
StyD4I	CCNGG	4 cut(s)	444, 534, 880, 886
StyI	CCWWGG	2 cut(s)	486, 1120
TaaI	ACNGT	6 cut(s)	73, 384, 776, 857, 949, 970
TaiI	ACGT	3 cut(s)	186, 216, 421
TaqI	TCGA	4 cut(s)	260, 672, 938, 995
TasI	AATT	3 cut(s)	142, 1102, 1140
TatI	WGTACW	2 cut(s)	630, 642
TauI	GCSGC	3 cut(s)	83, 516, 572
Tru1I	TTAA	2 cut(s)	627, 987
Tru9I	TTAA	2 cut(s)	627, 987
TspDTI	ATGAA	4 cut(s)	255, 382, 494, 1082
TspGWI	ACGGA	1 cut(s)	736
Van91I	CCANNNNNTGG	2 cut(s)	818, 893
VpaK11BI	GGWCC	1 cut(s)	442
XmiI	GTMKAC	3 cut(s)	186, 576, 750
XmnI	GAANNNNTTC	1 cut(s)	895
XspI	CTAG	1 cut(s)	357
ZrmI	AGTACT	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.