Rorug01G0466600

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
55902046 .. 55904997
2952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0466600.1

Sequence Viewer

Length: 1557 bp
ATGATTAACTCGATGGATGAAGCCCCAGAAGTAAGTCTCACAGGTTACACTACTCATTATGGATATGGTCGGAAACCATCAGAAATGAGAAAAACGAAAAGGAGATTTAGTTCGTGGTGGACTAGTTTTTCGGTTCGAGGTTCATGGTGGGATTCGATATTTGTAGCCTCGTGTGTTATCGCAGTCTCACTGGATCCATTGTTCTTTTACATTCCTATCATCGATAGGGAAAAGAAGTGCCTTGAAGCAGACATAAAACTGAGGAACGTAACTCTTCTTTTGCGATCACTCATGGATATCACTTTTATAGTGCATATCTATCAAATTCGTGAAGCTATGATTGCTGCAGCCTCGGATAAGATGGCTACCCAGGAAGAATCGAAATTTTTCTGTTTCTTTGAATATGTTGATGCAATAATTGACAATTTGTCACGGCGCTCTCTCATAACTGACATTCTAGCTGTTCTTCCTATCCCACAGGTGCTACTACTTGTTGTCTTCTTCAAAATGAGAGGCTCTGGATATTTGGACCACAGGAAGATTTTGAACTTCTTTCTTCTCGCTCAATATTTGGCAAGAATTTATCGTATACACCTATCTTCGAAAAAACTTACAAAGAGTCATGGAATATGGATTAAGGGACTATTCAATTTCTTTCTCTATATCTTTGCAAGTCACGTACTTGGAGCCTTTTGGTATTTCTTTTCGATTCAACGAGAGACATCATGTTGGCATCGAAGTTGTGGTCACAACTGTACAAGTACCTTTTATTGTGATGAGTACAAACATTCAGACGATATGGTGACACTTATAACATCTCTGAATGCATCGTGCCCTATCAATGCTACTGGACCATTTGATTTTGGAATATTTCTTGATTCTCTGATGTCTAATAACACGGCATCAACCAACTTTCCACAAAGGTTGTGTTACTCTTTCTGGTGGGGTCTACGAAATTTGAGTAATTTTGGCACGAATCTTGTAACAAGTAACTATGTATGGGAGAATTTATTCGCAATTCTTATTTCTATCATTGGCTTGTTACTGTTTTTGTACCTCATCGGAAATGTGCAGACATTTATGTCTATGGAAACTGAGAAGTCAGAGGAGATAAGAAGGAAGATCAAATCAAAAGAGCAAGATATGAAAGTGTGGATGGAGAAAAATTGCCTCCCTGCTAATTTGAGGAAAGAAATCATGGCAAATATAAGAGAAAAATTAGAACAAGACAAGCATGCTGACATGGAGAATCTGTTCTCCATTCTTCCCTGGTCAACCAAAAAATCTCTAAAGCGTGTTCTCTGCATGAGTACACTGAGAAAAGTACCAATGCTTGAAGGTATGAATCCAAAAGTTTTGAAAATGATATGTGACTATCTGAAGCCTGTGATATACCCTGAGCATAGCTATATGTTGCCAAGGTGGATGAACCAGTTGATCGGATGGTGCTTGTCACCGAAGGAACTATGTGGATCTACTCGTCGAATACTAGTACTCCATCTAAGATCCACAGGACGGTTGAGAAAGGTGACATTTATGGAGATGAACAACTTCTGA

Protein Analysis

518

Amino Acids

60.6

Weight (kDa)

9.26

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 49 - 368 7.1e-07 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 812
AasI GACNNNNNNGTC 1 cut(s) 1081
AccI GTMKAC 2 cut(s) 589, 949
AclWI GGATC 4 cut(s) 188, 201, 1480, 1500
AcsI RAATTY 5 cut(s) 324, 383, 579, 955, 1006
AcuI CTGAAG 1 cut(s) 1400
AfaI GTAC 8 cut(s) 681, 757, 763, 782, 1055, 1312, 1326, 1494
AfiI CCNNNNNNNGG 1 cut(s) 1515
AgsI TTSAA 8 cut(s) 245, 401, 505, 547, 649, 713, 1337, 1360
AhdI GACNNNNNGTC 1 cut(s) 427
AhlI ACTAGT 2 cut(s) 122, 1489
AjnI CCWGG 2 cut(s) 369, 1268
AloI GAACNNNNNNTCC 6 cut(s) 94, 126, 185, 217, 1238, 1270
AluBI AGCT 3 cut(s) 335, 461, 1407
AluI AGCT 3 cut(s) 335, 461, 1407
Alw26I GTCTC 3 cut(s) 41, 190, 713
AlwI GGATC 4 cut(s) 188, 201, 1480, 1500
ApeKI GCWGC 2 cut(s) 344, 347
ApoI RAATTY 5 cut(s) 324, 383, 579, 955, 1006
ArsI GACNNNNNNTTYG 4 cut(s) 112, 144, 730, 762
Asp700I GAANNNNTTC 4 cut(s) 386, 1010, 1253, 1550
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 2 cut(s) 529, 851
AsuHPI GGTGA 3 cut(s) 814, 1446, 1540
AsuII TTCGAA 1 cut(s) 602
AvaII GGWCC 2 cut(s) 529, 851
BaeGI GKGCMC 1 cut(s) 836
BamHI GGATCC 1 cut(s) 193
BauI CACGAG 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 490
BbvI GCAGC 2 cut(s) 331, 359
BccI CCATC 6 cut(s) 7, 85, 355, 1150, 1437, 1506
BceAI ACGGC 2 cut(s) 449, 915
BciT130I CCWGG 2 cut(s) 371, 1270
BcoDI GTCTC 3 cut(s) 41, 190, 713
BcuI ACTAGT 2 cut(s) 122, 1489
BfaI CTAG 3 cut(s) 123, 458, 1490
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 439
BisI GCNGC 2 cut(s) 345, 348
BlsI GCNGC 2 cut(s) 346, 349
BmcAI AGTACT 1 cut(s) 1494
Bme1390I CCNGG 2 cut(s) 371, 1270
Bme18I GGWCC 2 cut(s) 529, 851
BmeRI GACNNNNNGTC 1 cut(s) 427
BmgT120I GGNCC 2 cut(s) 529, 851
BmiI GGNNCC 2 cut(s) 195, 688
BmrFI CCNGG 2 cut(s) 371, 1270
BmsI GCATC 4 cut(s) 400, 742, 836, 911
BpiI GAAGAC 1 cut(s) 490
Bpu10I CCTNAGC 1 cut(s) 1398
Bpu14I TTCGAA 1 cut(s) 602
Bsa29I ATCGAT 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 679
BsaJI CCNNGG 4 cut(s) 351, 369, 1268, 1418
BsaXI ACNNNNNCTCC 6 cut(s) 94, 124, 1238, 1268, 1479, 1509
Bsc4I CCNNNNNNNGG 1 cut(s) 1515
Bse1I ACTGG 3 cut(s) 195, 853, 1432
BseBI CCWGG 2 cut(s) 371, 1270
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 4 cut(s) 351, 369, 1268, 1418
BseGI GGATG 4 cut(s) 22, 1161, 1431, 1448
BseLI CCNNNNNNNGG 1 cut(s) 1515
BseMII CTCAG 4 cut(s) 251, 1086, 1307, 1389
BseNI ACTGG 3 cut(s) 195, 853, 1432
BseRI GAGGAG 1 cut(s) 1121
BseSI GKGCMC 1 cut(s) 836
BseXI GCAGC 2 cut(s) 331, 359
BsgI GTGCAG 1 cut(s) 1091
BshVI ATCGAT 1 cut(s) 222
BslFI GGGAC 1 cut(s) 654
BslI CCNNNNNNNGG 1 cut(s) 1515
BsmAI GTCTC 3 cut(s) 41, 190, 713
BsmFI GGGAC 1 cut(s) 654
BsmI GAATGC 1 cut(s) 829
Bsp119I TTCGAA 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 836
Bsp1407I TGTACA 1 cut(s) 755
Bsp143I GATC 6 cut(s) 193, 284, 1122, 1437, 1472, 1505
BspCNI CTCAG 4 cut(s) 252, 1087, 1308, 1390
BspDI ATCGAT 1 cut(s) 222
BspLI GGNNCC 2 cut(s) 195, 688
BspMAI CTGCAG 1 cut(s) 349
BspPI GGATC 4 cut(s) 188, 201, 1480, 1500
BspT104I TTCGAA 1 cut(s) 602
BsrGI TGTACA 1 cut(s) 755
BsrI ACTGG 3 cut(s) 195, 853, 1432
BssECI CCNNGG 4 cut(s) 351, 369, 1268, 1418
BssMI GATC 6 cut(s) 193, 284, 1122, 1437, 1472, 1505
BssNAI GTATAC 1 cut(s) 590
BssSI CACGAG 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 1418
Bst1107I GTATAC 1 cut(s) 590
Bst2BI CACGAG 1 cut(s) 169
Bst2UI CCWGG 2 cut(s) 371, 1270
Bst4CI ACNGT 3 cut(s) 755, 1047, 1518
Bst6I CTCTTC 1 cut(s) 279
BstAUI TGTACA 1 cut(s) 755
BstBAI YACGTR 1 cut(s) 679
BstBI TTCGAA 1 cut(s) 602
BstC8I GCNNGC 1 cut(s) 1236
BstDEI CTNAG 5 cut(s) 260, 1095, 1316, 1398, 1502
BstF5I GGATG 4 cut(s) 22, 1161, 1431, 1448
BstH2I RGCGCY 1 cut(s) 439
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 6 cut(s) 196, 287, 1125, 1440, 1475, 1508
BstMAI GTCTC 3 cut(s) 41, 190, 713
BstMBI GATC 6 cut(s) 193, 284, 1122, 1437, 1472, 1505
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 2 cut(s) 371, 1270
BstNSI RCATGY 1 cut(s) 1238
BstSCI CCNGG 2 cut(s) 369, 1268
BstSFI CTRYAG 1 cut(s) 345
BstSLI GKGCMC 1 cut(s) 836
BstV1I GCAGC 2 cut(s) 331, 359
BstV2I GAAGAC 1 cut(s) 490
BstX2I RGATCY 3 cut(s) 193, 1472, 1505
BstYI RGATCY 3 cut(s) 193, 1472, 1505
BstZ17I GTATAC 1 cut(s) 590
Bsu15I ATCGAT 1 cut(s) 222
BsuTUI ATCGAT 1 cut(s) 222
BtsCI GGATG 4 cut(s) 22, 1161, 1431, 1448
BtsIMutI CAGTG 2 cut(s) 188, 1313
Cac8I GCNNGC 1 cut(s) 1236
CfoI GCGC 1 cut(s) 438
Cfr13I GGNCC 2 cut(s) 529, 851
ClaI ATCGAT 1 cut(s) 222
Csp6I GTAC 8 cut(s) 680, 756, 762, 781, 1054, 1311, 1325, 1493
CspCI CAANNNNNGTGG 2 cut(s) 906, 941
CviAII CATG 8 cut(s) 144, 292, 623, 726, 1198, 1235, 1243, 1306
CviQI GTAC 8 cut(s) 680, 756, 762, 781, 1054, 1311, 1325, 1493
DdeI CTNAG 5 cut(s) 260, 1095, 1316, 1398, 1502
DpnI GATC 6 cut(s) 195, 286, 1124, 1439, 1474, 1507
DpnII GATC 6 cut(s) 193, 284, 1122, 1437, 1472, 1505
DrdI GACNNNNNNGTC 1 cut(s) 1081
DriI GACNNNNNGTC 1 cut(s) 427
DseDI GACNNNNNNGTC 1 cut(s) 1081
Eam1104I CTCTTC 1 cut(s) 279
Eam1105I GACNNNNNGTC 1 cut(s) 427
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 1418
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 2 cut(s) 529, 851
Eco57I CTGAAG 1 cut(s) 1400
EcoRII CCWGG 2 cut(s) 369, 1268
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 1418
EcoT22I ATGCAT 1 cut(s) 829
ErhI CCWWGG 1 cut(s) 1418
FaeI CATG 8 cut(s) 147, 295, 626, 729, 1201, 1238, 1246, 1309
FaqI GGGAC 1 cut(s) 654
FatI CATG 8 cut(s) 143, 291, 622, 725, 1197, 1234, 1242, 1305
FblI GTMKAC 2 cut(s) 589, 949
Fnu4HI GCNGC 2 cut(s) 345, 348
FokI GGATG 4 cut(s) 29, 1168, 1438, 1455
Fsp4HI GCNGC 2 cut(s) 345, 348
FspBI CTAG 3 cut(s) 123, 458, 1490
GlaI GCGC 1 cut(s) 437
GluI GCNGC 2 cut(s) 345, 348
HaeII RGCGCY 1 cut(s) 439
HhaI GCGC 1 cut(s) 438
Hin1II CATG 8 cut(s) 147, 295, 626, 729, 1201, 1238, 1246, 1309
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HincII GTYRAC 1 cut(s) 1275
HindII GTYRAC 1 cut(s) 1275
HinfI GANTC 8 cut(s) 152, 377, 619, 709, 878, 976, 1249, 1345
HphI GGTGA 3 cut(s) 814, 1446, 1540
Hpy166II GTNNAC 5 cut(s) 120, 590, 950, 1275, 1313
Hpy188III TCNNGA 3 cut(s) 329, 519, 875
Hpy8I GTNNAC 5 cut(s) 120, 590, 950, 1275, 1313
Hpy99I CGWCG 1 cut(s) 1485
HpyAV CCTTC 3 cut(s) 1110, 1331, 1453
HpyCH4III ACNGT 3 cut(s) 755, 1047, 1518
HpyCH4IV ACGT 2 cut(s) 267, 678
HpyCH4V TGCA 7 cut(s) 313, 347, 413, 671, 827, 1072, 1305
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 5 cut(s) 260, 1095, 1316, 1398, 1502
HpySE526I ACGT 2 cut(s) 267, 678
Hsp92II CATG 8 cut(s) 147, 295, 626, 729, 1201, 1238, 1246, 1309
HspAI GCGC 1 cut(s) 436
Kzo9I GATC 6 cut(s) 193, 284, 1122, 1437, 1472, 1505
LmnI GCTCC 1 cut(s) 686
Lsp1109I GCAGC 2 cut(s) 331, 359
LweI GCATC 4 cut(s) 400, 742, 836, 911
MaeI CTAG 3 cut(s) 123, 458, 1490
MaeII ACGT 2 cut(s) 267, 678
MalI GATC 6 cut(s) 195, 286, 1124, 1439, 1474, 1507
MboI GATC 6 cut(s) 193, 284, 1122, 1437, 1472, 1505
MflI RGATCY 3 cut(s) 193, 1472, 1505
MhlI GDGCHC 1 cut(s) 836
MlyI GAGTC 1 cut(s) 628
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 9 cut(s) 131, 178, 255, 361, 506, 1067, 1099, 1179, 1181
Mph1103I ATGCAT 1 cut(s) 829
MroXI GAANNNNTTC 4 cut(s) 386, 1010, 1253, 1550
MseI TTAA 2 cut(s) 6, 636
MspR9I CCNGG 2 cut(s) 371, 1270
Mva1269I GAATGC 1 cut(s) 829
MvaI CCWGG 2 cut(s) 371, 1270
MwoI GCNNNNNNNGC 1 cut(s) 341
NdeII GATC 6 cut(s) 193, 284, 1122, 1437, 1472, 1505
NlaIII CATG 8 cut(s) 147, 295, 626, 729, 1201, 1238, 1246, 1309
NlaIV GGNNCC 2 cut(s) 195, 688
NmuCI GTSAC 7 cut(s) 429, 674, 746, 802, 1370, 1452, 1528
NsiI ATGCAT 1 cut(s) 829
NspI RCATGY 1 cut(s) 1238
NspV TTCGAA 1 cut(s) 602
PaeI GCATGC 1 cut(s) 1238
PctI GAATGC 1 cut(s) 829
PdmI GAANNNNTTC 4 cut(s) 386, 1010, 1253, 1550
PfeI GAWTC 7 cut(s) 152, 377, 709, 878, 976, 1249, 1345
PkrI GCNGC 2 cut(s) 346, 349
PleI GAGTC 1 cut(s) 627
PpsI GAGTC 1 cut(s) 627
Ppu21I YACGTR 1 cut(s) 679
PsiI TTATAA 1 cut(s) 812
Psp6I CCWGG 2 cut(s) 369, 1268
PspGI CCWGG 2 cut(s) 369, 1268
PspN4I GGNNCC 2 cut(s) 195, 688
PspPI GGNCC 2 cut(s) 529, 851
PstI CTGCAG 1 cut(s) 349
PsuI RGATCY 3 cut(s) 193, 1472, 1505
RsaI GTAC 8 cut(s) 681, 757, 763, 782, 1055, 1312, 1326, 1494
RsaNI GTAC 8 cut(s) 680, 756, 762, 781, 1054, 1311, 1325, 1493
SaqAI TTAA 2 cut(s) 6, 636
SatI GCNGC 2 cut(s) 345, 348
Sau3AI GATC 6 cut(s) 193, 284, 1122, 1437, 1472, 1505
Sau96I GGNCC 2 cut(s) 529, 851
ScaI AGTACT 1 cut(s) 1494
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 2 cut(s) 371, 1270
SduI GDGCHC 1 cut(s) 836
SfaNI GCATC 4 cut(s) 400, 742, 836, 911
SfcI CTRYAG 1 cut(s) 345
SfuI TTCGAA 1 cut(s) 602
SinI GGWCC 2 cut(s) 529, 851
SpeI ACTAGT 2 cut(s) 122, 1489
SphI GCATGC 1 cut(s) 1238
SspI AATATT 2 cut(s) 569, 870
SspMI CTAG 3 cut(s) 123, 458, 1490
StyD4I CCNGG 2 cut(s) 369, 1268
StyI CCWWGG 1 cut(s) 1418
TaaI ACNGT 3 cut(s) 755, 1047, 1518
TaiI ACGT 2 cut(s) 270, 681
TaqI TCGA 9 cut(s) 11, 136, 155, 222, 380, 602, 707, 736, 1483
TatI WGTACW 4 cut(s) 755, 780, 1310, 1492
TfiI GAWTC 7 cut(s) 152, 377, 709, 878, 976, 1249, 1345
Tru1I TTAA 2 cut(s) 6, 636
Tru9I TTAA 2 cut(s) 6, 636
TscAI CASTG 2 cut(s) 195, 1320
TseFI GTSAC 7 cut(s) 429, 674, 746, 802, 1370, 1452, 1528
TseI GCWGC 2 cut(s) 344, 347
Tsp45I GTSAC 7 cut(s) 429, 674, 746, 802, 1370, 1452, 1528
TspDTI ATGAA 5 cut(s) 33, 132, 1160, 1358, 1442
TspRI CASTG 2 cut(s) 195, 1320
VpaK11BI GGWCC 2 cut(s) 529, 851
XapI RAATTY 5 cut(s) 324, 383, 579, 955, 1006
XceI RCATGY 1 cut(s) 1238
XmiI GTMKAC 2 cut(s) 589, 949
XmnI GAANNNNTTC 4 cut(s) 386, 1010, 1253, 1550
XspI CTAG 3 cut(s) 123, 458, 1490
ZrmI AGTACT 1 cut(s) 1494
Zsp2I ATGCAT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.