RchiOBHm_Chr2g0086331

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
1547681 .. 1548874
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46185

Sequence Viewer

Length: 1194 bp
ATGCCAAGCCTCAACAACTTTGTGCATCTTATTATTCTTTTTCTCCTATGTTGCTTGACGATGATCACGACGGGAAGTGCAGCAGAGCCCGCGTCGGAAAACCCTCCAGCGGTGAAATCAGGCTATTATCCACCTTCGGATAATTTCCCACCTTCAGCCATAGACACTACTTTCTTTACTCACGTCTACTATGCCTTTCTTGTGCCGAGCAACGTTACATTTAGATTTGAGCTGTCAAATGAAACGGCTTTACTCCTCTCGAACTTCACCACCGCCCTCCGCCACAAGACTCCACTTGTGAAGACCATGCTGTCCATAGGTGGCGGTGCAGGAGAAGAAGTGGCACACATCTTTGCTAGCATGGCATCAAACCCGTCCTCACGGTCAAACTTCATTGACTCGGCTATAGAAGTTGCACGTAAGTTTGGGTTTGATGGGCTGGACCTGGACTGGGAATACCCTGAAAGCCCAATAGAAATGAAGGCCTTGGGCCACTTGCTAAAACAATGGCGCCGCGAAATCAAGAAAGAGGCCCAGGCGACAAATAGCCAACCTCTACTGCTCACCGCCGCTGTCTACTTCTCCGCCGAGTTCTTCTTGGATGCCGTCATCCGCTCGTACCCGATTAAGTACATGGAAAAGTACTTGGATTGGGCCAATGTAATGTGCTTCGACTATCACGGGGCTTGGAGCAATATTACAGGGCCCAATGCACCATTATTTGACCCAAATAGTAATGTGAACTCCATTTACGGGCTTAGGTCATGGATCAACGGTGGCATGACCGCAAACAAGCTCGTAATGGGCTTGCCACTCTATGGCCGGACATGGGAGCTCAAAGACCCTAAAGATAACGGTATTGGATCCATTGCTATAGGCCCAGGCCCAGGAAATGGTTCACTCGGCTTCAACGAGTTGGAGGCCCTAAATGAGGAGTCGACCGCCATCGTGGTATATGACGCCGACACCGTATCGGTATATTCTGTTAATGGGTCGAGTTGGATTGCATTTGACGATGCCTTTACAACAACCTCCAAGATAGGGTTTGCTCAAGCTCTTGGGCTTCGTGGGTACTTCTTTTGGGCCATCATTCATGATAGCAATTGGAAGATCTCGGCCCAAGGTAACCAAATTACTATCCGCTACTTTTTTTTCTCAGTAAAACAATGTTGTTTAACGTTTTCCTTCTTGTGA

Protein Analysis

397

Amino Acids

43.95

Weight (kDa)

5.3

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 41 - 365 3.3e-66 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 310
AccB1I GGYRCC 1 cut(s) 510
AccB7I CCANNNNNTGG 2 cut(s) 818, 893
AccBSI CCGCTC 1 cut(s) 615
AccI GTMKAC 3 cut(s) 186, 576, 938
AccII CGCG 2 cut(s) 92, 516
AclI AACGTT 2 cut(s) 213, 1178
AclWI GGATC 3 cut(s) 776, 858, 871
AcoI YGGCCR 1 cut(s) 820
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 2 cut(s) 511, 960
AfaI GTAC 4 cut(s) 620, 632, 644, 1073
AfiI CCNNNNNNNGG 9 cut(s) 109, 451, 753, 818, 829, 887, 893, 931, 1041
AgsI TTSAA 1 cut(s) 910
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 4 cut(s) 444, 534, 880, 886
AluBI AGCT 4 cut(s) 232, 796, 835, 1055
AluI AGCT 4 cut(s) 232, 796, 835, 1055
Alw21I GWGCWC 1 cut(s) 837
AlwI GGATC 3 cut(s) 776, 858, 871
ApaI GGGCCC 1 cut(s) 708
ApeKI GCWGC 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 895
AspLEI GCGC 1 cut(s) 513
AsuHPI GGTGA 3 cut(s) 124, 259, 556
AsuNHI GCTAGC 1 cut(s) 356
AvaII GGWCC 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 708
BamHI GGATCC 1 cut(s) 863
BanI GGYRCC 1 cut(s) 510
BanII GRGCYC 3 cut(s) 90, 708, 837
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 837
BbvI GCAGC 1 cut(s) 92
BccI CCATC 3 cut(s) 428, 953, 1094
BceAI ACGGC 2 cut(s) 261, 590
BciT130I CCWGG 4 cut(s) 446, 536, 882, 888
BclI TGATCA 1 cut(s) 63
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 2 cut(s) 405, 873
BfoI RGCGCY 1 cut(s) 514
BglII AGATCT 1 cut(s) 1110
BisI GCNGC 3 cut(s) 81, 514, 570
BlsI GCNGC 3 cut(s) 82, 515, 571
BmcAI AGTACT 1 cut(s) 644
Bme1390I CCNGG 4 cut(s) 446, 536, 882, 888
Bme18I GGWCC 1 cut(s) 442
BmgBI CACGTC 1 cut(s) 184
BmiI GGNNCC 3 cut(s) 512, 706, 865
BmrFI CCNGG 4 cut(s) 446, 536, 882, 888
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 4 cut(s) 34, 374, 592, 1006
BmtI GCTAGC 1 cut(s) 360
BmuI ACTGGG 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 308
BpmI CTGGAG 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 758
BpuEI CTTGAG 1 cut(s) 1035
BsaAI YACGTR 1 cut(s) 419
BsaHI GRCGYC 2 cut(s) 511, 960
BsaJI CCNNGG 5 cut(s) 486, 534, 880, 886, 1120
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 9 cut(s) 109, 451, 753, 818, 829, 887, 893, 931, 1041
Bse1I ACTGG 1 cut(s) 455
Bse3DI GCAATG 1 cut(s) 867
BseBI CCWGG 4 cut(s) 446, 536, 882, 888
BseDI CCNNGG 5 cut(s) 486, 534, 880, 886, 1120
BseGI GGATG 2 cut(s) 607, 609
BseLI CCNNNNNNNGG 9 cut(s) 109, 451, 753, 818, 829, 887, 893, 931, 1041
BseMI GCAATG 1 cut(s) 867
BseMII CTCAG 1 cut(s) 1170
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 2 cut(s) 245, 947
BseSI GKGCMC 1 cut(s) 708
BseXI GCAGC 1 cut(s) 92
BsgI GTGCAG 2 cut(s) 99, 348
Bsh1236I CGCG 2 cut(s) 92, 516
Bsh1285I CGRYCG 1 cut(s) 942
BshNI GGYRCC 1 cut(s) 510
BsiEI CGRYCG 1 cut(s) 942
BsiHKAI GWGCWC 1 cut(s) 837
BsiSI CCGG 1 cut(s) 823
BslI CCNNNNNNNGG 9 cut(s) 109, 451, 753, 818, 829, 887, 893, 931, 1041
Bsp120I GGGCCC 1 cut(s) 704
Bsp1286I GDGCHC 3 cut(s) 90, 708, 837
Bsp143I GATC 4 cut(s) 63, 768, 863, 1110
BspCNI CTCAG 1 cut(s) 1169
BspFNI CGCG 2 cut(s) 92, 516
BspHI TCATGA 1 cut(s) 1093
BspLI GGNNCC 3 cut(s) 512, 706, 865
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 3 cut(s) 776, 858, 871
BspT107I GGYRCC 1 cut(s) 510
BsrBI CCGCTC 1 cut(s) 615
BsrDI GCAATG 1 cut(s) 867
BsrI ACTGG 1 cut(s) 455
BssECI CCNNGG 5 cut(s) 486, 534, 880, 886, 1120
BssMI GATC 4 cut(s) 63, 768, 863, 1110
BssNI GRCGYC 2 cut(s) 511, 960
BssT1I CCWWGG 2 cut(s) 486, 1120
Bst2UI CCWGG 4 cut(s) 446, 536, 882, 888
Bst4CI ACNGT 4 cut(s) 384, 776, 857, 970
BstACI GRCGYC 2 cut(s) 511, 960
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 3 cut(s) 90, 358, 809
BstDEI CTNAG 2 cut(s) 758, 1156
BstEII GGTNACC 1 cut(s) 1124
BstENI CCTNNNNNAGG 1 cut(s) 929
BstF5I GGATG 2 cut(s) 607, 609
BstFNI CGCG 2 cut(s) 92, 516
BstH2I RGCGCY 1 cut(s) 514
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 4 cut(s) 66, 771, 866, 1113
BstMBI GATC 4 cut(s) 63, 768, 863, 1110
BstMCI CGRYCG 1 cut(s) 942
BstMWI GCNNNNNNNGC 2 cut(s) 89, 362
BstNI CCWGG 4 cut(s) 446, 536, 882, 888
BstPI GGTNACC 1 cut(s) 1124
BstSCI CCNGG 4 cut(s) 444, 534, 880, 886
BstSFI CTRYAG 2 cut(s) 405, 873
BstSLI GKGCMC 1 cut(s) 708
BstUI CGCG 2 cut(s) 92, 516
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 2 cut(s) 863, 1110
BstYI RGATCY 2 cut(s) 863, 1110
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 2 cut(s) 607, 609
Cac8I GCNNGC 3 cut(s) 90, 358, 809
CciI TCATGA 1 cut(s) 1093
CfoI GCGC 1 cut(s) 513
CseI GACGC 2 cut(s) 81, 968
Csp6I GTAC 4 cut(s) 619, 631, 643, 1072
CviAII CATG 7 cut(s) 307, 361, 634, 765, 781, 828, 1094
CviQI GTAC 4 cut(s) 619, 631, 643, 1072
DdeI CTNAG 2 cut(s) 758, 1156
DinI GGCGCC 1 cut(s) 512
DpnI GATC 4 cut(s) 65, 770, 865, 1112
DpnII GATC 4 cut(s) 63, 768, 863, 1110
DrdI GACNNNNNNGTC 1 cut(s) 310
DseDI GACNNNNNNGTC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 820
EciI GGCGGA 2 cut(s) 269, 574
Ecl136II GAGCTC 1 cut(s) 835
Eco130I CCWWGG 2 cut(s) 486, 1120
Eco147I AGGCCT 1 cut(s) 485
Eco24I GRGCYC 3 cut(s) 90, 708, 837
Eco47I GGWCC 1 cut(s) 442
Eco53kI GAGCTC 1 cut(s) 835
Eco57I CTGAAG 1 cut(s) 138
Eco91I GGTNACC 1 cut(s) 1124
EcoICRI GAGCTC 1 cut(s) 835
EcoNI CCTNNNNNAGG 1 cut(s) 929
EcoO109I RGGNCCY 2 cut(s) 704, 922
EcoO65I GGTNACC 1 cut(s) 1124
EcoRII CCWGG 4 cut(s) 444, 534, 880, 886
EcoT14I CCWWGG 2 cut(s) 486, 1120
EcoT38I GRGCYC 3 cut(s) 90, 708, 837
EgeI GGCGCC 1 cut(s) 512
EheI GGCGCC 1 cut(s) 512
ErhI CCWWGG 2 cut(s) 486, 1120
FaeI CATG 7 cut(s) 310, 364, 637, 768, 784, 831, 1097
FatI CATG 7 cut(s) 306, 360, 633, 764, 780, 827, 1093
FauI CCCGC 1 cut(s) 97
FbaI TGATCA 1 cut(s) 63
FblI GTMKAC 3 cut(s) 186, 576, 938
Fnu4HI GCNGC 3 cut(s) 81, 514, 570
FokI GGATG 2 cut(s) 596, 614
FriOI GRGCYC 3 cut(s) 90, 708, 837
Fsp4HI GCNGC 3 cut(s) 81, 514, 570
FspBI CTAG 1 cut(s) 357
GlaI GCGC 1 cut(s) 512
GluI GCNGC 3 cut(s) 81, 514, 570
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 514
HapII CCGG 1 cut(s) 823
HgaI GACGC 2 cut(s) 81, 968
HhaI GCGC 1 cut(s) 513
Hin1I GRCGYC 2 cut(s) 511, 960
Hin1II CATG 7 cut(s) 310, 364, 637, 768, 784, 831, 1097
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HincII GTYRAC 1 cut(s) 939
HindII GTYRAC 1 cut(s) 939
HinfI GANTC 3 cut(s) 289, 398, 935
HpaII CCGG 1 cut(s) 823
HphI GGTGA 3 cut(s) 124, 259, 556
Hpy166II GTNNAC 5 cut(s) 187, 577, 742, 899, 939
Hpy188I TCNGA 2 cut(s) 97, 139
Hpy188III TCNNGA 4 cut(s) 67, 259, 523, 1094
Hpy8I GTNNAC 5 cut(s) 187, 577, 742, 899, 939
Hpy99I CGWCG 2 cut(s) 73, 97
HpyAV CCTTC 3 cut(s) 144, 162, 475
HpyCH4III ACNGT 4 cut(s) 384, 776, 857, 970
HpyCH4IV ACGT 4 cut(s) 183, 213, 418, 1178
HpyCH4V TGCA 6 cut(s) 25, 80, 329, 416, 713, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 362
HpyF3I CTNAG 2 cut(s) 758, 1156
HpySE526I ACGT 4 cut(s) 183, 213, 418, 1178
Hsp92I GRCGYC 2 cut(s) 511, 960
Hsp92II CATG 7 cut(s) 310, 364, 637, 768, 784, 831, 1097
HspAI GCGC 1 cut(s) 511
KasI GGCGCC 1 cut(s) 510
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 4 cut(s) 63, 768, 863, 1110
LmnI GCTCC 2 cut(s) 690, 832
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 4 cut(s) 34, 374, 592, 1006
MaeI CTAG 1 cut(s) 357
MaeII ACGT 4 cut(s) 183, 213, 418, 1178
MaeIII GTNAC 2 cut(s) 214, 1124
MalI GATC 4 cut(s) 65, 770, 865, 1112
MbiI CCGCTC 1 cut(s) 615
MboI GATC 4 cut(s) 63, 768, 863, 1110
MboII GAAGA 4 cut(s) 313, 347, 586, 1120
MfeI CAATTG 1 cut(s) 1102
MflI RGATCY 2 cut(s) 863, 1110
MhlI GDGCHC 3 cut(s) 90, 708, 837
MluCI AATT 3 cut(s) 142, 1102, 1131
Mly113I GGCGCC 1 cut(s) 511
MlyI GAGTC 3 cut(s) 283, 392, 944
MmeI TCCRAC 3 cut(s) 75, 897, 980
MroXI GAANNNNTTC 1 cut(s) 895
MseI TTAA 3 cut(s) 627, 987, 1175
MspA1I CMGCKG 2 cut(s) 110, 572
MspI CCGG 1 cut(s) 823
MspR9I CCNGG 4 cut(s) 446, 536, 882, 888
MunI CAATTG 1 cut(s) 1102
MvaI CCWGG 4 cut(s) 446, 536, 882, 888
MvnI CGCG 2 cut(s) 92, 516
MwoI GCNNNNNNNGC 2 cut(s) 89, 362
NarI GGCGCC 1 cut(s) 511
NdeII GATC 4 cut(s) 63, 768, 863, 1110
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 7 cut(s) 310, 364, 637, 768, 784, 831, 1097
NlaIV GGNNCC 3 cut(s) 512, 706, 865
NmeAIII GCCGAG 5 cut(s) 231, 380, 613, 882, 1094
PagI TCATGA 1 cut(s) 1093
PceI AGGCCT 1 cut(s) 485
PcsI WCGNNNNNNNCGW 3 cut(s) 65, 909, 966
PdmI GAANNNNTTC 1 cut(s) 895
PflMI CCANNNNNTGG 2 cut(s) 818, 893
PkrI GCNGC 3 cut(s) 82, 515, 571
PleI GAGTC 3 cut(s) 283, 392, 943
PluTI GGCGCC 1 cut(s) 514
PpsI GAGTC 3 cut(s) 283, 392, 943
Ppu21I YACGTR 1 cut(s) 419
Psp124BI GAGCTC 1 cut(s) 837
Psp1406I AACGTT 2 cut(s) 213, 1178
Psp6I CCWGG 4 cut(s) 444, 534, 880, 886
PspEI GGTNACC 1 cut(s) 1124
PspGI CCWGG 4 cut(s) 444, 534, 880, 886
PspN4I GGNNCC 3 cut(s) 512, 706, 865
PspOMI GGGCCC 1 cut(s) 704
PsrI GAACNNNNNNTAC 2 cut(s) 734, 766
PsuI RGATCY 2 cut(s) 863, 1110
RsaI GTAC 4 cut(s) 620, 632, 644, 1073
RsaNI GTAC 4 cut(s) 619, 631, 643, 1072
SacI GAGCTC 1 cut(s) 837
SalI GTCGAC 1 cut(s) 937
SaqAI TTAA 3 cut(s) 627, 987, 1175
SatI GCNGC 3 cut(s) 81, 514, 570
Sau3AI GATC 4 cut(s) 63, 768, 863, 1110
ScaI AGTACT 1 cut(s) 644
SchI GAGTC 3 cut(s) 283, 392, 944
ScrFI CCNGG 4 cut(s) 446, 536, 882, 888
SduI GDGCHC 3 cut(s) 90, 708, 837
SfaNI GCATC 4 cut(s) 34, 374, 592, 1006
SfcI CTRYAG 2 cut(s) 405, 873
SfoI GGCGCC 1 cut(s) 512
SinI GGWCC 1 cut(s) 442
SmlI CTYRAG 1 cut(s) 1050
SmoI CTYRAG 1 cut(s) 1050
Sse9I AATT 3 cut(s) 142, 1102, 1131
SseBI AGGCCT 1 cut(s) 485
SspDI GGCGCC 1 cut(s) 510
SspI AATATT 1 cut(s) 697
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 1 cut(s) 837
StuI AGGCCT 1 cut(s) 485
StyD4I CCNGG 4 cut(s) 444, 534, 880, 886
StyI CCWWGG 2 cut(s) 486, 1120
TaaI ACNGT 4 cut(s) 384, 776, 857, 970
TaiI ACGT 4 cut(s) 186, 216, 421, 1181
TaqI TCGA 4 cut(s) 260, 672, 938, 995
TasI AATT 3 cut(s) 142, 1102, 1131
TatI WGTACW 2 cut(s) 630, 642
TauI GCSGC 2 cut(s) 516, 572
Tru1I TTAA 3 cut(s) 627, 987, 1175
Tru9I TTAA 3 cut(s) 627, 987, 1175
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 255, 382, 494, 1082
Van91I CCANNNNNTGG 2 cut(s) 818, 893
VpaK11BI GGWCC 1 cut(s) 442
XagI CCTNNNNNAGG 1 cut(s) 929
XmiI GTMKAC 3 cut(s) 186, 576, 938
XmnI GAANNNNTTC 1 cut(s) 895
XspI CTAG 1 cut(s) 357
ZrmI AGTACT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.