Rh2CG017700

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
1410550 .. 1412125
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG017700.1

Sequence Viewer

Length: 1272 bp
ATGCCAAGCCTCAACAACTTTGTGCATCTTATTATTCTTTTTCTCCTATGTTGCTTGACGATGATCACGACCGGAAGTGCAGCAGAGCCCGCGTCGGAAAACCCTCCAGCGGTGAAATCAGGCTATTATCCACCTTCGGATAATTTCCCACCTTCAGCCATAGACACTACTTTCTTTACTCACGTCTACTATGCCTTTCTTGTGCCGAGCAACGTTACATTTAGATTTGAGCTGTCAAATGAAACGACTTTACTCCTCTCGAACTTCACCACCGCCCTCCGCCACAAGACTCCGCTTGTGAAGACCATGCTGTCCATAGGTGGCGGTGCCGGAGAAGAAGTGGCACACATCTTTGCTAGCATGGCTTCAAACCCATCCTCGCGGTCAAACTTCATTGACTCGGCTATAGAAGTTGCACGTAAGTTTGGGTTTGATGGGCTGGACCTGGACTGGGAATACCCTGAAAGCCCAATAGAAATGAAGGCCTTGGGCCACTTGCTAAAACAATGGCGCCGCGAAATCAAGAAAGAGGCCCAGGCTACAAATAGCCAACCTCTACTACTCACCGCCGCCGTCTACTTCTCCGCCGAGTTCTTCTTGGATGCCGTCATCCGCTCGTACCCGATTAAGTACATGGAAAAGTACTTGGATTGGGCCAATGTAATGTGCTTCGACTATCACGGGGCTTGGAGCAATATTACAGGGCCCAATGCACCATTATTTGACCCAAATAGTAATGTGAACTCCGTTTACGGGCTTAGGTCATGGATCAACGGTGGCATGACCCCAAACAAGCTCGTAATGGGCTTGCCACTCTATGGCCGGACGTGGGAGCTCAAAGACCCTAAAGATAACGGAATTGGATCCATTGCTATAGGCCCAGGCCCAGGAAATGGTTCACTTGGCTTCAACGAGTTGGAGGCCCTAAATGAGGAGTCGACCGCCACCGTGGTATATGACGCCGACACCGTATCGGTATATTCTGTTAATGGGTCGAGTTGGATTGCATTTGACGATGCCTTTACAACAACCTCCAAGATAGGGTTTGCTCAAGCTCTTGGGCTTCGTGGGTACTTCTTTTGGGCCATCATTCATGATAGCAATTGGAAGATCTCGGCCCAAGGGGCGGCTTCCTTGGTGCTCAAAATTCCGGCGACAGTCGGTTATAAACTCGCCGAGTGTATTAGTTTTAGCCTTTTATGTGTGTATGTTGAGACTTTATCTAAGTGCAAGAAAGGTCCTGTATCAATTCATCAATTGCCAAAAACATAG

Protein Analysis

423

Amino Acids

46.43

Weight (kDa)

5.66

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 42 - 365 1.4e-66 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1167
AasI GACNNNNNNGTC 1 cut(s) 310
AccB1I GGYRCC 2 cut(s) 326, 510
AccB7I CCANNNNNTGG 2 cut(s) 818, 893
AccBSI CCGCTC 1 cut(s) 615
AccI GTMKAC 3 cut(s) 186, 576, 938
AccII CGCG 3 cut(s) 92, 382, 516
AclI AACGTT 1 cut(s) 213
AclWI GGATC 3 cut(s) 776, 858, 871
AcoI YGGCCR 1 cut(s) 820
AcsI RAATTY 1 cut(s) 1146
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 2 cut(s) 511, 960
AfaI GTAC 4 cut(s) 620, 632, 644, 1073
AgsI TTSAA 2 cut(s) 369, 910
AjiI CACGTC 2 cut(s) 184, 828
AjnI CCWGG 4 cut(s) 444, 534, 880, 886
AluBI AGCT 4 cut(s) 232, 796, 835, 1055
AluI AGCT 4 cut(s) 232, 796, 835, 1055
Alw21I GWGCWC 2 cut(s) 837, 1143
Alw26I GTCTC 1 cut(s) 1208
AlwI GGATC 3 cut(s) 776, 858, 871
ApaI GGGCCC 1 cut(s) 708
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 1146
Asp700I GAANNNNTTC 1 cut(s) 895
AspLEI GCGC 1 cut(s) 513
AsuHPI GGTGA 3 cut(s) 124, 259, 556
AsuNHI GCTAGC 1 cut(s) 356
AvaII GGWCC 2 cut(s) 442, 1238
BaeGI GKGCMC 1 cut(s) 708
BamHI GGATCC 1 cut(s) 863
BanI GGYRCC 2 cut(s) 326, 510
BanII GRGCYC 3 cut(s) 90, 708, 837
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 2 cut(s) 837, 1143
BbvI GCAGC 1 cut(s) 92
BccI CCATC 3 cut(s) 382, 428, 1094
BceAI ACGGC 2 cut(s) 557, 590
BciT130I CCWGG 4 cut(s) 446, 536, 882, 888
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 1208
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 2 cut(s) 405, 873
BfoI RGCGCY 1 cut(s) 514
BglI GCCNNNNNGGC 1 cut(s) 1124
BglII AGATCT 1 cut(s) 1110
BisI GCNGC 4 cut(s) 81, 514, 570, 1128
BlsI GCNGC 4 cut(s) 82, 515, 571, 1129
BmcAI AGTACT 1 cut(s) 644
Bme1390I CCNGG 4 cut(s) 446, 536, 882, 888
Bme18I GGWCC 2 cut(s) 442, 1238
BmgBI CACGTC 2 cut(s) 184, 828
BmiI GGNNCC 4 cut(s) 328, 512, 706, 865
BmrFI CCNGG 4 cut(s) 446, 536, 882, 888
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 3 cut(s) 34, 592, 1006
BmtI GCTAGC 1 cut(s) 360
BmuI ACTGGG 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 308
BpmI CTGGAG 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 758
BpuEI CTTGAG 1 cut(s) 1035
BsaAI YACGTR 1 cut(s) 419
BsaHI GRCGYC 2 cut(s) 511, 960
BsaJI CCNNGG 7 cut(s) 486, 534, 880, 886, 948, 1120, 1134
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bse1I ACTGG 1 cut(s) 455
Bse3DI GCAATG 1 cut(s) 867
BseBI CCWGG 4 cut(s) 446, 536, 882, 888
BseDI CCNNGG 7 cut(s) 486, 534, 880, 886, 948, 1120, 1134
BseGI GGATG 3 cut(s) 374, 607, 609
BseMI GCAATG 1 cut(s) 867
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 2 cut(s) 245, 947
BseSI GKGCMC 1 cut(s) 708
BseXI GCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 3 cut(s) 92, 382, 516
Bsh1285I CGRYCG 2 cut(s) 72, 942
BshNI GGYRCC 2 cut(s) 326, 510
BsiEI CGRYCG 2 cut(s) 72, 942
BsiHKAI GWGCWC 2 cut(s) 837, 1143
BsiSI CCGG 4 cut(s) 72, 330, 823, 1151
BsmAI GTCTC 1 cut(s) 1208
Bsp120I GGGCCC 1 cut(s) 704
Bsp1286I GDGCHC 4 cut(s) 90, 708, 837, 1143
Bsp143I GATC 4 cut(s) 63, 768, 863, 1110
BspFNI CGCG 3 cut(s) 92, 382, 516
BspHI TCATGA 1 cut(s) 1093
BspLI GGNNCC 4 cut(s) 328, 512, 706, 865
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 3 cut(s) 776, 858, 871
BspT107I GGYRCC 2 cut(s) 326, 510
BsrBI CCGCTC 1 cut(s) 615
BsrDI GCAATG 1 cut(s) 867
BsrI ACTGG 1 cut(s) 455
BssECI CCNNGG 7 cut(s) 486, 534, 880, 886, 948, 1120, 1134
BssMI GATC 4 cut(s) 63, 768, 863, 1110
BssNI GRCGYC 2 cut(s) 511, 960
BssT1I CCWWGG 3 cut(s) 486, 1120, 1134
Bst2UI CCWGG 4 cut(s) 446, 536, 882, 888
Bst4CI ACNGT 4 cut(s) 776, 949, 970, 1159
BstACI GRCGYC 2 cut(s) 511, 960
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 3 cut(s) 90, 358, 809
BstDEI CTNAG 2 cut(s) 758, 1224
BstDSI CCRYGG 1 cut(s) 948
BstENI CCTNNNNNAGG 1 cut(s) 929
BstF5I GGATG 3 cut(s) 374, 607, 609
BstFNI CGCG 3 cut(s) 92, 382, 516
BstH2I RGCGCY 1 cut(s) 514
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 4 cut(s) 66, 771, 866, 1113
BstMAI GTCTC 1 cut(s) 1208
BstMBI GATC 4 cut(s) 63, 768, 863, 1110
BstMCI CGRYCG 2 cut(s) 72, 942
BstMWI GCNNNNNNNGC 3 cut(s) 89, 362, 1124
BstNI CCWGG 4 cut(s) 446, 536, 882, 888
BstSCI CCNGG 4 cut(s) 444, 534, 880, 886
BstSFI CTRYAG 2 cut(s) 405, 873
BstSLI GKGCMC 1 cut(s) 708
BstUI CGCG 3 cut(s) 92, 382, 516
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 2 cut(s) 863, 1110
BstYI RGATCY 2 cut(s) 863, 1110
BtgI CCRYGG 1 cut(s) 948
BtrI CACGTC 2 cut(s) 184, 828
BtsCI GGATG 3 cut(s) 374, 607, 609
Cac8I GCNNGC 3 cut(s) 90, 358, 809
CciI TCATGA 1 cut(s) 1093
CfoI GCGC 1 cut(s) 513
CseI GACGC 2 cut(s) 81, 968
Csp6I GTAC 4 cut(s) 619, 631, 643, 1072
CviAII CATG 6 cut(s) 307, 361, 634, 765, 781, 1094
CviQI GTAC 4 cut(s) 619, 631, 643, 1072
DdeI CTNAG 2 cut(s) 758, 1224
DinI GGCGCC 1 cut(s) 512
DpnI GATC 4 cut(s) 65, 770, 865, 1112
DpnII GATC 4 cut(s) 63, 768, 863, 1110
DrdI GACNNNNNNGTC 1 cut(s) 310
DseDI GACNNNNNNGTC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 820
EciI GGCGGA 2 cut(s) 269, 574
Ecl136II GAGCTC 1 cut(s) 835
Eco130I CCWWGG 3 cut(s) 486, 1120, 1134
Eco147I AGGCCT 1 cut(s) 485
Eco24I GRGCYC 3 cut(s) 90, 708, 837
Eco47I GGWCC 2 cut(s) 442, 1238
Eco53kI GAGCTC 1 cut(s) 835
Eco57I CTGAAG 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 835
EcoNI CCTNNNNNAGG 1 cut(s) 929
EcoO109I RGGNCCY 3 cut(s) 704, 922, 1238
EcoRII CCWGG 4 cut(s) 444, 534, 880, 886
EcoT14I CCWWGG 3 cut(s) 486, 1120, 1134
EcoT38I GRGCYC 3 cut(s) 90, 708, 837
EgeI GGCGCC 1 cut(s) 512
EheI GGCGCC 1 cut(s) 512
ErhI CCWWGG 3 cut(s) 486, 1120, 1134
FaeI CATG 6 cut(s) 310, 364, 637, 768, 784, 1097
FatI CATG 6 cut(s) 306, 360, 633, 764, 780, 1093
FauI CCCGC 1 cut(s) 97
FbaI TGATCA 1 cut(s) 63
FblI GTMKAC 3 cut(s) 186, 576, 938
Fnu4HI GCNGC 4 cut(s) 81, 514, 570, 1128
FokI GGATG 3 cut(s) 361, 596, 614
FriOI GRGCYC 3 cut(s) 90, 708, 837
Fsp4HI GCNGC 4 cut(s) 81, 514, 570, 1128
FspBI CTAG 1 cut(s) 357
GlaI GCGC 1 cut(s) 512
GluI GCNGC 4 cut(s) 81, 514, 570, 1128
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 514
HapII CCGG 4 cut(s) 72, 330, 823, 1151
HgaI GACGC 2 cut(s) 81, 968
HhaI GCGC 1 cut(s) 513
Hin1I GRCGYC 2 cut(s) 511, 960
Hin1II CATG 6 cut(s) 310, 364, 637, 768, 784, 1097
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HincII GTYRAC 1 cut(s) 939
HindII GTYRAC 1 cut(s) 939
HinfI GANTC 3 cut(s) 289, 398, 935
HpaII CCGG 4 cut(s) 72, 330, 823, 1151
HphI GGTGA 3 cut(s) 124, 259, 556
Hpy166II GTNNAC 6 cut(s) 187, 577, 742, 751, 899, 939
Hpy188I TCNGA 2 cut(s) 97, 139
Hpy188III TCNNGA 4 cut(s) 67, 259, 523, 1094
Hpy8I GTNNAC 6 cut(s) 187, 577, 742, 751, 899, 939
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 144, 162, 475
HpyCH4III ACNGT 4 cut(s) 776, 949, 970, 1159
HpyCH4IV ACGT 4 cut(s) 183, 213, 418, 827
HpyCH4V TGCA 6 cut(s) 25, 80, 416, 713, 1007, 1230
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 362, 1124
HpyF3I CTNAG 2 cut(s) 758, 1224
HpySE526I ACGT 4 cut(s) 183, 213, 418, 827
Hsp92I GRCGYC 2 cut(s) 511, 960
Hsp92II CATG 6 cut(s) 310, 364, 637, 768, 784, 1097
HspAI GCGC 1 cut(s) 511
KasI GGCGCC 1 cut(s) 510
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 4 cut(s) 63, 768, 863, 1110
LmnI GCTCC 2 cut(s) 690, 832
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 3 cut(s) 34, 592, 1006
MaeI CTAG 1 cut(s) 357
MaeII ACGT 4 cut(s) 183, 213, 418, 827
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 65, 770, 865, 1112
MbiI CCGCTC 1 cut(s) 615
MboI GATC 4 cut(s) 63, 768, 863, 1110
MboII GAAGA 4 cut(s) 313, 347, 586, 1120
MfeI CAATTG 2 cut(s) 1102, 1256
MflI RGATCY 2 cut(s) 863, 1110
MhlI GDGCHC 4 cut(s) 90, 708, 837, 1143
MluCI AATT 6 cut(s) 142, 858, 1102, 1146, 1248, 1256
Mly113I GGCGCC 1 cut(s) 511
MlyI GAGTC 3 cut(s) 283, 392, 944
MmeI TCCRAC 3 cut(s) 75, 897, 980
MroXI GAANNNNTTC 1 cut(s) 895
MseI TTAA 2 cut(s) 627, 987
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 4 cut(s) 72, 330, 823, 1151
MspR9I CCNGG 4 cut(s) 446, 536, 882, 888
MunI CAATTG 2 cut(s) 1102, 1256
MvaI CCWGG 4 cut(s) 446, 536, 882, 888
MvnI CGCG 3 cut(s) 92, 382, 516
MwoI GCNNNNNNNGC 3 cut(s) 89, 362, 1124
NarI GGCGCC 1 cut(s) 511
NdeII GATC 4 cut(s) 63, 768, 863, 1110
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 6 cut(s) 310, 364, 637, 768, 784, 1097
NlaIV GGNNCC 4 cut(s) 328, 512, 706, 865
NmeAIII GCCGAG 5 cut(s) 231, 380, 613, 1094, 1201
PagI TCATGA 1 cut(s) 1093
PceI AGGCCT 1 cut(s) 485
PcsI WCGNNNNNNNCGW 2 cut(s) 65, 966
PdmI GAANNNNTTC 1 cut(s) 895
PflMI CCANNNNNTGG 2 cut(s) 818, 893
PkrI GCNGC 4 cut(s) 82, 515, 571, 1129
PleI GAGTC 3 cut(s) 283, 392, 943
PluTI GGCGCC 1 cut(s) 514
PpsI GAGTC 3 cut(s) 283, 392, 943
Ppu21I YACGTR 1 cut(s) 419
PpuMI RGGWCCY 1 cut(s) 1238
PsiI TTATAA 1 cut(s) 1167
Psp124BI GAGCTC 1 cut(s) 837
Psp1406I AACGTT 1 cut(s) 213
Psp5II RGGWCCY 1 cut(s) 1238
Psp6I CCWGG 4 cut(s) 444, 534, 880, 886
PspGI CCWGG 4 cut(s) 444, 534, 880, 886
PspN4I GGNNCC 4 cut(s) 328, 512, 706, 865
PspOMI GGGCCC 1 cut(s) 704
PspPPI RGGWCCY 1 cut(s) 1238
PsrI GAACNNNNNNTAC 2 cut(s) 734, 766
PsuI RGATCY 2 cut(s) 863, 1110
RsaI GTAC 4 cut(s) 620, 632, 644, 1073
RsaNI GTAC 4 cut(s) 619, 631, 643, 1072
SacI GAGCTC 1 cut(s) 837
SalI GTCGAC 1 cut(s) 937
SaqAI TTAA 2 cut(s) 627, 987
SatI GCNGC 4 cut(s) 81, 514, 570, 1128
Sau3AI GATC 4 cut(s) 63, 768, 863, 1110
ScaI AGTACT 1 cut(s) 644
SchI GAGTC 3 cut(s) 283, 392, 944
ScrFI CCNGG 4 cut(s) 446, 536, 882, 888
SduI GDGCHC 4 cut(s) 90, 708, 837, 1143
SfaNI GCATC 3 cut(s) 34, 592, 1006
SfcI CTRYAG 2 cut(s) 405, 873
SfoI GGCGCC 1 cut(s) 512
SinI GGWCC 2 cut(s) 442, 1238
SmlI CTYRAG 1 cut(s) 1050
SmoI CTYRAG 1 cut(s) 1050
Sse9I AATT 6 cut(s) 142, 858, 1102, 1146, 1248, 1256
SseBI AGGCCT 1 cut(s) 485
SspDI GGCGCC 1 cut(s) 510
SspI AATATT 1 cut(s) 697
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 1 cut(s) 837
StuI AGGCCT 1 cut(s) 485
StyD4I CCNGG 4 cut(s) 444, 534, 880, 886
StyI CCWWGG 3 cut(s) 486, 1120, 1134
TaaI ACNGT 4 cut(s) 776, 949, 970, 1159
TaiI ACGT 4 cut(s) 186, 216, 421, 830
TaqI TCGA 4 cut(s) 260, 672, 938, 995
TasI AATT 6 cut(s) 142, 858, 1102, 1146, 1248, 1256
TatI WGTACW 2 cut(s) 630, 642
TauI GCSGC 3 cut(s) 516, 572, 1130
Tru1I TTAA 2 cut(s) 627, 987
Tru9I TTAA 2 cut(s) 627, 987
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 5 cut(s) 255, 382, 494, 1082, 1241
TspGWI ACGGA 2 cut(s) 736, 870
Van91I CCANNNNNTGG 2 cut(s) 818, 893
VpaK11BI GGWCC 2 cut(s) 442, 1238
XagI CCTNNNNNAGG 1 cut(s) 929
XapI RAATTY 1 cut(s) 1146
XmiI GTMKAC 3 cut(s) 186, 576, 938
XmnI GAANNNNTTC 1 cut(s) 895
XspI CTAG 1 cut(s) 357
ZrmI AGTACT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.