Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013730

Physical Location & Seq

Genomic Coordinates Forward (+)

11629635 .. 11630562

Gene Structure 928 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1156800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCAAGCCACAACTTTTTGCATATTCTCTTGCTCTTATGTTCCTTGATGGTCATAAACACCGGCTGCACGGCCGAGGCTCCACCGACGGTGGAAGCGGCGTATTATCCTTCGTTTTCGCCGGATTTCCCACCTTCAGCCATAAACACATCATTCTTCACCCACATTTTCTATGCTTTTCTTGTGCCAAATAATGTCACTTTCAAATTTGACTTGTCAAATTCTACGGCTTTGCTCCTCTCCAATTTCACCACCACTCTCCGCCACAAAACTCCGCCGGTGAAGACCCTTTTGTCCATCGGCGGCGCAGCAGACGGCGTGGTTGCACGTAAGTTTGGGTTTGATGGGCTGGACCTTGATTGGGAGTTCCTTCAAAGCCCAAAAGAAATGAAGGATTTGAGCCACTTGTTAAAAGAATGGCACCACGAGCTCAAGGAGTCCAAATCCACGGCCCGCCCTCCGCTACTCCTCACCGCTGCCGTTTACTTCTCGGCCGACTTCTTCTTGGACGCCGTCCCCCGATCGTACCCGGCGTCGTCTCTGAAAAAGTACTTGGACTGGATCAATCCAATGTGCTACGACTACAAAGGGGCTTGGAGCAATACCACAGGGCCCAATGCAGCATTGTGGAACCCGTTTAGTAACGTAAATTCAATATATGGGCTTAAGTCATGGATCAAGGCCGGGATACACCCGGCGAAATTGGTTATGGGCTTGGCCCTCTACGGCCGGTCGTGGGAGCTCCAAAACCCGAAAAATCACGGCTTTGGAGCCACCGATATTGGGCCAGGCCCAGGAGCAGGGATGTTGTTTTACCACCAAGTCGAATTGTTACTAAACCAAAAGGGCCAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0007586 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0008843 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016192 GO:0016787 GO:0016798 GO:0017144 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032501 GO:0032940 GO:0034774 GO:0035580 GO:0036230 GO:0042119 GO:0042581 GO:0042737 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044237 GO:0044245 GO:0044248 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046348 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060205 GO:0070013 GO:0070820 GO:0071704 GO:0097367 GO:0097708 GO:0099503 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1904724

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

286

Amino Acids

31.59

Weight (kDa)

7.76

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	35 - 254	3.7e-39	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013730)

Species	Orthologous Gene IDs
malus_domestica	MD15G1156400.v1.1 MD15G1156500.v1.1 MD15G1156800.v1.1 MD15G1157100.v1.1
prunus_persica	Prupe.7G258400_v2.0.a1
pyrus_communis	pycom15g14090
rosa_chinensis	RchiOBHm_Chr2g0086331
rosa_laevigata	RLG00000015750
rosa_multiflora	Rmu_co8445245.1_g000001 Rmu_sc0004510.1_g000019 Rmu_sc0005127.1_g000013
rosa_roxburghii	Rroxscaffold_2G00154690
rosa_rugosa	Rorug01G0466600
rosa_samantha	Rh2AG016800 Rh2BG016600 Rh2CG017700 Rh2DG018400
rosa_wichuraiana	Rw2G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	420
AciI	CCGC	7 cut(s)	98, 262, 275, 303, 454, 461, 474
AclWI	GGATC	2 cut(s)	569, 683
AcoI	YGGCCR	3 cut(s)	72, 492, 727
AcsI	RAATTY	3 cut(s)	206, 220, 649
AcuI	CTGAAG	1 cut(s)	120
AcyI	GRCGYC	2 cut(s)	510, 533
AfaI	GTAC	2 cut(s)	527, 551
AfiI	CCNNNNNNNGG	5 cut(s)	361, 736, 783, 794, 800
AflII	CTTAAG	1 cut(s)	665
AgsI	TTSAA	3 cut(s)	205, 374, 654
AjnI	CCWGG	2 cut(s)	787, 793
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	2 cut(s)	430, 742
AluI	AGCT	2 cut(s)	430, 742
Alw21I	GWGCWC	2 cut(s)	432, 744
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	569, 683
ApaI	GGGCCC	1 cut(s)	615
ApeKI	GCWGC	4 cut(s)	66, 308, 476, 620
ApoI	RAATTY	3 cut(s)	206, 220, 649
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	8 cut(s)	352, 451, 611, 612, 718, 785, 791, 847
AsuC2I	CCSGG	3 cut(s)	530, 685, 695
AsuHPI	GGTGA	4 cut(s)	151, 241, 292, 463
AvaII	GGWCC	1 cut(s)	352
BaeGI	GKGCMC	1 cut(s)	615
BanI	GGYRCC	1 cut(s)	420
BanII	GRGCYC	3 cut(s)	432, 615, 744
BauI	CACGAG	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	290
Bbv12I	GWGCWC	2 cut(s)	432, 744
BbvI	GCAGC	4 cut(s)	53, 320, 463, 632
BccI	CCATC	3 cut(s)	43, 305, 338
BceAI	ACGGC	8 cut(s)	87, 243, 331, 464, 465, 497, 742, 778
BciT130I	CCWGG	2 cut(s)	789, 795
BciVI	GTATCC	1 cut(s)	681
BcnI	CCSGG	3 cut(s)	530, 685, 695
BcoDI	GTCTC	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	854
BfrI	CTTAAG	1 cut(s)	665
BfuI	GTATCC	1 cut(s)	681
BisI	GCNGC	6 cut(s)	67, 99, 304, 309, 477, 621
BlsI	GCNGC	6 cut(s)	68, 100, 305, 310, 478, 622
BmcAI	AGTACT	1 cut(s)	551
Bme1390I	CCNGG	5 cut(s)	530, 685, 695, 789, 795
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	8 cut(s)	352, 451, 611, 612, 718, 785, 791, 847
BmiI	GGNNCC	5 cut(s)	81, 422, 613, 632, 772
BmrFI	CCNGG	5 cut(s)	530, 685, 695, 789, 795
BpiI	GAAGAC	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	3 cut(s)	530, 685, 695
BsaAI	YACGTR	1 cut(s)	329
BsaHI	GRCGYC	2 cut(s)	510, 533
BsaJI	CCNNGG	3 cut(s)	75, 447, 793
Bsc4I	CCNNNNNNNGG	5 cut(s)	361, 736, 783, 794, 800
Bse118I	RCCGGY	3 cut(s)	62, 277, 729
Bse1I	ACTGG	1 cut(s)	563
BseBI	CCWGG	2 cut(s)	789, 795
BseDI	CCNNGG	3 cut(s)	75, 447, 793
BseGI	GGATG	1 cut(s)	810
BseLI	CCNNNNNNNGG	5 cut(s)	361, 736, 783, 794, 800
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	2 cut(s)	227, 458
BseSI	GKGCMC	1 cut(s)	615
BseX3I	CGGCCG	3 cut(s)	72, 492, 727
BseXI	GCAGC	4 cut(s)	53, 320, 463, 632
BsgI	GTGCAG	1 cut(s)	52
Bsh1285I	CGRYCG	5 cut(s)	75, 495, 524, 730, 734
BshNI	GGYRCC	1 cut(s)	420
BsiEI	CGRYCG	5 cut(s)	75, 495, 524, 730, 734
BsiHKAI	GWGCWC	2 cut(s)	432, 744
BsiSI	CCGG	7 cut(s)	63, 122, 278, 530, 684, 695, 730
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	5 cut(s)	361, 736, 783, 794, 800
BsmAI	GTCTC	1 cut(s)	543
BsmBI	CGTCTC	1 cut(s)	543
BsmFI	GGGAC	1 cut(s)	500
Bsp120I	GGGCCC	1 cut(s)	611
Bsp1286I	GDGCHC	3 cut(s)	432, 615, 744
Bsp143I	GATC	3 cut(s)	521, 561, 675
BspACI	CCGC	7 cut(s)	98, 262, 275, 303, 454, 461, 474
BspLI	GGNNCC	5 cut(s)	81, 422, 613, 632, 772
BspPI	GGATC	2 cut(s)	569, 683
BspT107I	GGYRCC	1 cut(s)	420
BspTI	CTTAAG	1 cut(s)	665
BsrFI	RCCGGY	3 cut(s)	62, 277, 729
BsrI	ACTGG	1 cut(s)	563
BssAI	RCCGGY	3 cut(s)	62, 277, 729
BssECI	CCNNGG	3 cut(s)	75, 447, 793
BssMI	GATC	3 cut(s)	521, 561, 675
BssNI	GRCGYC	2 cut(s)	510, 533
BssSI	CACGAG	1 cut(s)	425
Bst2BI	CACGAG	1 cut(s)	425
Bst2UI	CCWGG	2 cut(s)	789, 795
Bst4CI	ACNGT	2 cut(s)	91, 855
BstACI	GRCGYC	2 cut(s)	510, 533
BstAFI	CTTAAG	1 cut(s)	665
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	7, 454
BstDSI	CCRYGG	1 cut(s)	447
BstF5I	GGATG	1 cut(s)	810
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	3 cut(s)	524, 564, 678
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	3 cut(s)	521, 561, 675
BstMCI	CGRYCG	5 cut(s)	75, 495, 524, 730, 734
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNI	CCWGG	2 cut(s)	789, 795
BstSCI	CCNGG	5 cut(s)	528, 683, 693, 787, 793
BstSFI	CTRYAG	1 cut(s)	854
BstSLI	GKGCMC	1 cut(s)	615
BstV1I	GCAGC	4 cut(s)	53, 320, 463, 632
BstV2I	GAAGAC	1 cut(s)	290
BstZI	CGGCCG	3 cut(s)	72, 492, 727
BsuI	GTATCC	1 cut(s)	681
BtgI	CCRYGG	1 cut(s)	447
BtsCI	GGATG	1 cut(s)	810
Cac8I	GCNNGC	2 cut(s)	7, 454
CfoI	GCGC	1 cut(s)	308
Cfr10I	RCCGGY	3 cut(s)	62, 277, 729
Cfr13I	GGNCC	8 cut(s)	352, 451, 611, 612, 718, 785, 791, 847
CseI	GACGC	2 cut(s)	518, 522
Csp6I	GTAC	2 cut(s)	526, 550
CspCI	CAANNNNNGTGG	2 cut(s)	763, 798
CviAII	CATG	1 cut(s)	672
CviQI	GTAC	2 cut(s)	526, 550
DpnI	GATC	3 cut(s)	523, 563, 677
DpnII	GATC	3 cut(s)	521, 561, 675
DrdI	GACNNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	292
EaeI	YGGCCR	3 cut(s)	72, 492, 727
EagI	CGGCCG	3 cut(s)	72, 492, 727
EciI	GGCGGA	2 cut(s)	251, 264
Ecl136II	GAGCTC	2 cut(s)	430, 742
EclXI	CGGCCG	3 cut(s)	72, 492, 727
Eco24I	GRGCYC	3 cut(s)	432, 615, 744
Eco47I	GGWCC	1 cut(s)	352
Eco52I	CGGCCG	3 cut(s)	72, 492, 727
Eco53kI	GAGCTC	2 cut(s)	430, 742
Eco57I	CTGAAG	1 cut(s)	120
EcoICRI	GAGCTC	2 cut(s)	430, 742
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	2 cut(s)	787, 793
EcoT38I	GRGCYC	3 cut(s)	432, 615, 744
Esp3I	CGTCTC	1 cut(s)	543
FaeI	CATG	1 cut(s)	675
FaiI	YATR	9 cut(s)	24, 40, 56, 143, 174, 658, 660, 673, 710
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	1 cut(s)	671
FauI	CCCGC	1 cut(s)	461
Fnu4HI	GCNGC	6 cut(s)	67, 99, 304, 309, 477, 621
FokI	GGATG	1 cut(s)	817
FriOI	GRGCYC	3 cut(s)	432, 615, 744
Fsp4HI	GCNGC	6 cut(s)	67, 99, 304, 309, 477, 621
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	6 cut(s)	67, 99, 304, 309, 477, 621
HapII	CCGG	7 cut(s)	63, 122, 278, 530, 684, 695, 730
HgaI	GACGC	2 cut(s)	518, 522
HhaI	GCGC	1 cut(s)	308
Hin1I	GRCGYC	2 cut(s)	510, 533
Hin1II	CATG	1 cut(s)	675
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HinfI	GANTC	1 cut(s)	437
HpaII	CCGG	7 cut(s)	63, 122, 278, 530, 684, 695, 730
HphI	GGTGA	4 cut(s)	151, 241, 292, 463
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	1 cut(s)	543
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	2 cut(s)	91, 538
HpyAV	CCTTC	4 cut(s)	120, 144, 380, 385
HpyCH4III	ACNGT	2 cut(s)	91, 855
HpyCH4IV	ACGT	2 cut(s)	328, 645
HpyCH4V	TGCA	4 cut(s)	22, 69, 326, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpySE526I	ACGT	2 cut(s)	328, 645
Hsp92I	GRCGYC	2 cut(s)	510, 533
Hsp92II	CATG	1 cut(s)	675
HspAI	GCGC	1 cut(s)	306
Kzo9I	GATC	3 cut(s)	521, 561, 675
LmnI	GCTCC	7 cut(s)	85, 240, 597, 739, 747, 770, 797
Lsp1109I	GCAGC	4 cut(s)	53, 320, 463, 632
MaeII	ACGT	2 cut(s)	328, 645
MaeIII	GTNAC	3 cut(s)	196, 641, 831
MalI	GATC	3 cut(s)	523, 563, 677
MboI	GATC	3 cut(s)	521, 561, 675
MboII	GAAGA	3 cut(s)	148, 295, 493
MhlI	GDGCHC	3 cut(s)	432, 615, 744
MluCI	AATT	6 cut(s)	206, 220, 244, 649, 701, 827
MlyI	GAGTC	1 cut(s)	446
MnlI	CCTC	5 cut(s)	70, 248, 468, 479, 731
MseI	TTAA	2 cut(s)	410, 666
MspA1I	CMGCKG	1 cut(s)	476
MspCI	CTTAAG	1 cut(s)	665
MspI	CCGG	7 cut(s)	63, 122, 278, 530, 684, 695, 730
MspR9I	CCNGG	5 cut(s)	530, 685, 695, 789, 795
MvaI	CCWGG	2 cut(s)	789, 795
MwoI	GCNNNNNNNGC	1 cut(s)	427
NciI	CCSGG	3 cut(s)	530, 685, 695
NdeII	GATC	3 cut(s)	521, 561, 675
NlaIII	CATG	1 cut(s)	675
NlaIV	GGNNCC	5 cut(s)	81, 422, 613, 632, 772
NmeAIII	GCCGAG	2 cut(s)	100, 470
NmuCI	GTSAC	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	530
PflFI	GACNNNGTC	1 cut(s)	512
PkrI	GCNGC	6 cut(s)	68, 100, 305, 310, 478, 622
Ple19I	CGATCG	1 cut(s)	524
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
Ppu21I	YACGTR	1 cut(s)	329
Psp124BI	GAGCTC	2 cut(s)	432, 744
Psp6I	CCWGG	2 cut(s)	787, 793
PspGI	CCWGG	2 cut(s)	787, 793
PspN4I	GGNNCC	5 cut(s)	81, 422, 613, 632, 772
PspOMI	GGGCCC	1 cut(s)	611
PspPI	GGNCC	8 cut(s)	352, 451, 611, 612, 718, 785, 791, 847
PsyI	GACNNNGTC	1 cut(s)	512
PvuI	CGATCG	1 cut(s)	524
RsaI	GTAC	2 cut(s)	527, 551
RsaNI	GTAC	2 cut(s)	526, 550
SacI	GAGCTC	2 cut(s)	432, 744
SaqAI	TTAA	2 cut(s)	410, 666
SatI	GCNGC	6 cut(s)	67, 99, 304, 309, 477, 621
Sau3AI	GATC	3 cut(s)	521, 561, 675
Sau96I	GGNCC	8 cut(s)	352, 451, 611, 612, 718, 785, 791, 847
ScaI	AGTACT	1 cut(s)	551
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	5 cut(s)	530, 685, 695, 789, 795
SduI	GDGCHC	3 cut(s)	432, 615, 744
SetI	ASST	6 cut(s)	136, 331, 357, 432, 648, 744
SfcI	CTRYAG	1 cut(s)	854
SgrAI	CRCCGGYG	1 cut(s)	277
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	431, 665
SmoI	CTYRAG	2 cut(s)	431, 665
Sse9I	AATT	6 cut(s)	206, 220, 244, 649, 701, 827
SsiI	CCGC	7 cut(s)	98, 262, 275, 303, 454, 461, 474
SstI	GAGCTC	2 cut(s)	432, 744
StyD4I	CCNGG	5 cut(s)	528, 683, 693, 787, 793
TaaI	ACNGT	2 cut(s)	91, 855
TaiI	ACGT	2 cut(s)	331, 648
TaqI	TCGA	1 cut(s)	825
TasI	AATT	6 cut(s)	206, 220, 244, 649, 701, 827
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	2 cut(s)	101, 306
Tru1I	TTAA	2 cut(s)	410, 666
Tru9I	TTAA	2 cut(s)	410, 666
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	4 cut(s)	66, 308, 476, 620
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	404
Tth111I	GACNNNGTC	1 cut(s)	512
Vha464I	CTTAAG	1 cut(s)	665
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	3 cut(s)	206, 220, 649
ZrmI	AGTACT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.