Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013730

Physical Location & Seq

Genomic Coordinates Forward (+)

11617254 .. 11617643

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1156500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGATCAAGGCCGGGATACCCCGGCAAAATTGGTTATGGGCCTGGCCCTCTACGGCCGGTCGTGGGAGCTCCAAAATCTGAAAACTCACAGCTTTGGAGCCATTGCTATTGGGCCAGGGCCAGGAGCAGGGATGTTGTTTTACCACCAAGTCGAGACGCTACTAAACCAATCGGGCGCAACTGTAGTGTATGACATGGACACTGTATTCGTGTATTTGTACAACGGGTCCACGTGGGTTTCGTATGATGATGCCTTCACCACGGCCGCTAAGATAGGGTTTGCTCAGGCCCTTGGGCTTCGTGGATACTTCTTTTGGGCCCTCAGTTTTGATAGCGACTGGAAGATTTCGGCCCAAGGTAAACTAACCCACTTTTCCATGATAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0003824 GO:0004553 GO:0004568 GO:0005488 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006022 GO:0006026 GO:0006030 GO:0006032 GO:0006040 GO:0006807 GO:0006810 GO:0006887 GO:0006955 GO:0007586 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0008843 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016192 GO:0016787 GO:0016798 GO:0017144 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0031983 GO:0032501 GO:0032940 GO:0034774 GO:0035580 GO:0036230 GO:0042119 GO:0042581 GO:0042737 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044237 GO:0044245 GO:0044248 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046348 GO:0046903 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060205 GO:0070013 GO:0070820 GO:0071704 GO:0097367 GO:0097708 GO:0099503 GO:1901071 GO:1901072 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1904724

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

130

Amino Acids

14.25

Weight (kDa)

5.79

Isoelectric Point (pI)

14.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	6 - 111	1.2e-17	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013730)

Species	Orthologous Gene IDs
malus_domestica	MD15G1156400.v1.1 MD15G1156500.v1.1 MD15G1156800.v1.1 MD15G1157100.v1.1
prunus_persica	Prupe.7G258400_v2.0.a1
pyrus_communis	pycom15g14090
rosa_chinensis	RchiOBHm_Chr2g0086331
rosa_laevigata	RLG00000015750
rosa_multiflora	Rmu_co8445245.1_g000001 Rmu_sc0004510.1_g000019 Rmu_sc0005127.1_g000013
rosa_roxburghii	Rroxscaffold_2G00154690
rosa_rugosa	Rorug01G0466600
rosa_samantha	Rh2AG016800 Rh2BG016600 Rh2CG017700 Rh2DG018400
rosa_wichuraiana	Rw2G001420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	267
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	2 cut(s)	55, 264
AcvI	CACGTG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	3 cut(s)	64, 122, 128
AjnI	CCWGG	3 cut(s)	42, 115, 121
AluBI	AGCT	2 cut(s)	70, 93
AluI	AGCT	2 cut(s)	70, 93
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	12
ApaI	GGGCCC	1 cut(s)	322
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	9 cut(s)	40, 46, 113, 119, 228, 289, 318, 319, 352
AsuC2I	CCSGG	2 cut(s)	14, 23
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	322
BanII	GRGCYC	2 cut(s)	72, 322
BbrPI	CACGTG	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	72
BceAI	ACGGC	2 cut(s)	70, 279
BciT130I	CCWGG	3 cut(s)	44, 117, 123
BciVI	GTATCC	2 cut(s)	10, 299
BcnI	CCSGG	2 cut(s)	14, 23
BcoDI	GTCTC	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	183
BfuI	GTATCC	2 cut(s)	10, 299
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme1390I	CCNGG	5 cut(s)	14, 23, 44, 117, 123
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	9 cut(s)	40, 46, 113, 119, 228, 289, 318, 319, 352
BmiI	GGNNCC	3 cut(s)	100, 229, 320
BmrFI	CCNGG	5 cut(s)	14, 23, 44, 117, 123
BmsI	GCATC	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	285
BpuMI	CCSGG	2 cut(s)	14, 23
BsaAI	YACGTR	1 cut(s)	234
BsaJI	CCNNGG	5 cut(s)	21, 116, 261, 292, 355
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 122, 128
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	344
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	3 cut(s)	44, 117, 123
BseDI	CCNNGG	5 cut(s)	21, 116, 261, 292, 355
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	3 cut(s)	64, 122, 128
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	2 cut(s)	299, 337
BseNI	ACTGG	1 cut(s)	344
BseSI	GKGCMC	1 cut(s)	322
BseX3I	CGGCCG	2 cut(s)	55, 264
Bsh1285I	CGRYCG	3 cut(s)	58, 62, 267
BsiEI	CGRYCG	3 cut(s)	58, 62, 267
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	3 cut(s)	13, 23, 58
BslI	CCNNNNNNNGG	3 cut(s)	64, 122, 128
BsmAI	GTCTC	1 cut(s)	149
BsmBI	CGTCTC	1 cut(s)	149
Bsp120I	GGGCCC	1 cut(s)	318
Bsp1286I	GDGCHC	2 cut(s)	72, 322
Bsp1407I	TGTACA	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	267
BspCNI	CTCAG	2 cut(s)	298, 336
BspLI	GGNNCC	3 cut(s)	100, 229, 320
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	5 cut(s)	21, 116, 261, 292, 355
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	2 cut(s)	292, 355
Bst2UI	CCWGG	3 cut(s)	44, 117, 123
Bst4CI	ACNGT	2 cut(s)	184, 205
BstAUI	TGTACA	1 cut(s)	219
BstBAI	YACGTR	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	270, 285, 323
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	138
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	4
BstMCI	CGRYCG	3 cut(s)	58, 62, 267
BstNI	CCWGG	3 cut(s)	44, 117, 123
BstSCI	CCNGG	5 cut(s)	12, 21, 42, 115, 121
BstSFI	CTRYAG	1 cut(s)	183
BstSLI	GKGCMC	1 cut(s)	322
BstZI	CGGCCG	2 cut(s)	55, 264
BsuI	GTATCC	2 cut(s)	10, 299
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	201
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	9 cut(s)	40, 46, 113, 119, 228, 289, 318, 319, 352
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	196, 379
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	270, 285, 323
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EaeI	YGGCCR	2 cut(s)	55, 264
EagI	CGGCCG	2 cut(s)	55, 264
Ecl136II	GAGCTC	1 cut(s)	70
EclXI	CGGCCG	2 cut(s)	55, 264
Eco130I	CCWWGG	2 cut(s)	292, 355
Eco24I	GRGCYC	2 cut(s)	72, 322
Eco47I	GGWCC	1 cut(s)	228
Eco52I	CGGCCG	2 cut(s)	55, 264
Eco53kI	GAGCTC	1 cut(s)	70
Eco72I	CACGTG	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	70
EcoO109I	RGGNCCY	2 cut(s)	289, 319
EcoRII	CCWGG	3 cut(s)	42, 115, 121
EcoT14I	CCWWGG	2 cut(s)	292, 355
EcoT38I	GRGCYC	2 cut(s)	72, 322
ErhI	CCWWGG	2 cut(s)	292, 355
Esp3I	CGTCTC	1 cut(s)	149
FaeI	CATG	2 cut(s)	199, 382
FaiI	YATR	5 cut(s)	38, 192, 197, 246, 380
FatI	CATG	2 cut(s)	195, 378
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	145
FriOI	GRGCYC	2 cut(s)	72, 322
Fsp4HI	GCNGC	1 cut(s)	267
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	267
HapII	CCGG	3 cut(s)	13, 23, 58
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	199, 382
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HpaII	CCGG	3 cut(s)	13, 23, 58
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	2 cut(s)	231, 362
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	154
Hpy8I	GTNNAC	2 cut(s)	231, 362
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	184, 205
HpyCH4IV	ACGT	1 cut(s)	233
HpyF3I	CTNAG	3 cut(s)	270, 285, 323
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	2 cut(s)	199, 382
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	4 cut(s)	67, 75, 98, 125
LweI	GCATC	1 cut(s)	241
MaeII	ACGT	1 cut(s)	233
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	355
MhlI	GDGCHC	2 cut(s)	72, 322
MluCI	AATT	2 cut(s)	29, 384
MnlI	CCTC	2 cut(s)	59, 332
MspI	CCGG	3 cut(s)	13, 23, 58
MspR9I	CCNGG	5 cut(s)	14, 23, 44, 117, 123
MvaI	CCWGG	3 cut(s)	44, 117, 123
NciI	CCSGG	2 cut(s)	14, 23
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	199, 382
NlaIV	GGNNCC	3 cut(s)	100, 229, 320
PcsI	WCGNNNNNNNCGW	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	268
PmaCI	CACGTG	1 cut(s)	234
PmlI	CACGTG	1 cut(s)	234
Ppu21I	YACGTR	1 cut(s)	234
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	3 cut(s)	42, 115, 121
PspCI	CACGTG	1 cut(s)	234
PspGI	CCWGG	3 cut(s)	42, 115, 121
PspN4I	GGNNCC	3 cut(s)	100, 229, 320
PspOMI	GGGCCC	1 cut(s)	318
PspPI	GGNCC	9 cut(s)	40, 46, 113, 119, 228, 289, 318, 319, 352
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SacI	GAGCTC	1 cut(s)	72
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	9 cut(s)	40, 46, 113, 119, 228, 289, 318, 319, 352
ScrFI	CCNGG	5 cut(s)	14, 23, 44, 117, 123
SduI	GDGCHC	2 cut(s)	72, 322
SetI	ASST	4 cut(s)	72, 95, 236, 361
SfaNI	GCATC	1 cut(s)	241
SfcI	CTRYAG	1 cut(s)	183
SinI	GGWCC	1 cut(s)	228
Sse9I	AATT	2 cut(s)	29, 384
SsiI	CCGC	1 cut(s)	267
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	5 cut(s)	12, 21, 42, 115, 121
StyI	CCWWGG	2 cut(s)	292, 355
TaaI	ACNGT	2 cut(s)	184, 205
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	153
TasI	AATT	2 cut(s)	29, 384
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	269
TscAI	CASTG	1 cut(s)	208
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.