pycom15g14090

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
9604898 .. 9606697
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g14090.1

Sequence Viewer

Length: 1221 bp
ATGGCAAGCCACAACTTTTTGCATGTTCTCTTTCTCTTATGTTCCTTGATGATCATAAACACCGGCTGCACGGCCGAGGCTCCACCGGCGGTGAAAGCGGCATATTATCCTTCGTTTTCGCCGGATGCTTTCCCACCTTCAGCCATAAACACATCATTCTTCACCCACATTTTCTATGCTTTTCTTGTGCCAAATAATGTCACTTTCAAATTTGACTTGCCAAATTCTACGGCTTTGCTCCTCTCCAATTTCACCACCACTCTCCGCCACAAAACTCCGCCAGTGAAGACCCTTTTGTCCATCGGCGGCGCAGCAGACGGCGTGGTACTGCCATTCGTCTTTGCTCGCTTGGCCTCAAAAGCTTCGTCACGTTCACAATTCATACAATCTGCCATAGAGGTTGCACGTAAGTTTGGGTTTGATGGGCTGGACCTTGATTGGGAATTCCCTCAAAGCCCAAAAGAAATGAAGGATTTGGGCCACCTGCTAAAAGAATGGCGCCACGCGCTCAAGGAGGAGTCCAAATCCACGGCCCGCCCTCCTCTCCTCCTCACAGCCGCCGTTTACTTCTCGGCCGACTTCTTCTTGGATGCCGTCCTCCGATCCTACCCGGCGTCGTCACTGAAAAAGTACTTGGACTGGATCAATCCAATGTGCTACGACTACAACGGGGCTTGGAGCAATACCACAGGGCCCAATGCAGCATTGTGGAACCCGAATAGTAACGTAAACTCAATATATGGGCTTAGGTCATGGATCAAGGCCGGGATACCCCCGGAGAAATTGGTTATGGGCCTGGCCCTCTACGGCCGGTCGTGGGAGCTCCAAAACCCGAAAAATCACAGCTTTGGAGCCACCGCTATTGGGCCAGGCCCAGGAGCAGGGATGCTGTTTTACCATCAAGTCGAGACGCTACTAAACCAATCGGGCGCAACTGTAGTGTATGACGTGGACACTGTATCCGTATATTCGTACAACGGGTCCACGTGGGTTTCGTACGATGATGCCTTCACCACGGCCGCGAAGATAGGGTTTGCTCAGGCCCTTGGGCTTCGTGGATACTTCTTTTGGGCCCTCAGTTTTGATAGTGACTGGAAGATTTCGGCCCAAGATCGAATTCCCTACGGCAAACTCGCATCGAAACGAAAACAAAACCCCTCAAGCACAAATGGTTTGGTAGTAGAACCGATTGGCGGAATTGTTGACAAGCCCTGCAAATAG

Protein Analysis

407

Amino Acids

44.67

Weight (kDa)

8.81

Isoelectric Point (pI)

37.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 34 - 362 3.4e-68 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 492
AasI GACNNNNNNGTC 1 cut(s) 295
Acc36I ACCTGC 1 cut(s) 492
AccB1I GGYRCC 1 cut(s) 498
AccII CGCG 2 cut(s) 506, 1022
AclWI GGATC 3 cut(s) 597, 650, 764
AcoI YGGCCR 4 cut(s) 72, 573, 808, 1017
AcsI RAATTY 4 cut(s) 209, 223, 443, 1116
AcuI CTGAAG 1 cut(s) 123
AcvI CACGTG 1 cut(s) 987
AcyI GRCGYC 2 cut(s) 499, 614
AfaI GTAC 4 cut(s) 327, 632, 974, 998
AfiI CCNNNNNNNGG 6 cut(s) 439, 817, 864, 875, 881, 1193
AgsI TTSAA 1 cut(s) 208
AjiI CACGTC 1 cut(s) 949
AjnI CCWGG 3 cut(s) 795, 868, 874
AjuI GAANNNNNNNTTGG 4 cut(s) 617, 649, 1101, 1133
AluBI AGCT 3 cut(s) 362, 823, 846
AluI AGCT 3 cut(s) 362, 823, 846
Alw21I GWGCWC 1 cut(s) 825
Alw26I GTCTC 1 cut(s) 902
AlwI GGATC 3 cut(s) 597, 650, 764
ApaI GGGCCC 2 cut(s) 696, 1075
ApeKI GCWGC 3 cut(s) 66, 311, 701
ApoI RAATTY 4 cut(s) 209, 223, 443, 1116
ArsI GACNNNNNNTTYG 2 cut(s) 350, 382
AspLEI GCGC 4 cut(s) 311, 501, 508, 932
AsuC2I CCSGG 3 cut(s) 611, 766, 776
AsuHPI GGTGA 4 cut(s) 103, 154, 244, 1003
AvaII GGWCC 2 cut(s) 430, 981
BaeGI GKGCMC 2 cut(s) 696, 1075
BanI GGYRCC 1 cut(s) 498
BanII GRGCYC 3 cut(s) 696, 825, 1075
BbrPI CACGTG 1 cut(s) 987
BbsI GAAGAC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 3 cut(s) 53, 323, 713
BccI CCATC 3 cut(s) 308, 416, 906
BceAI ACGGC 9 cut(s) 87, 246, 334, 545, 546, 578, 823, 1032, 1141
BciT130I CCWGG 3 cut(s) 797, 870, 876
BciVI GTATCC 3 cut(s) 762, 970, 1052
BclI TGATCA 1 cut(s) 51
BcnI CCSGG 3 cut(s) 611, 766, 776
BcoDI GTCTC 1 cut(s) 902
BfmI CTRYAG 1 cut(s) 936
BfoI RGCGCY 1 cut(s) 502
BfuAI ACCTGC 1 cut(s) 492
BfuI GTATCC 3 cut(s) 762, 970, 1052
BisI GCNGC 7 cut(s) 67, 99, 307, 312, 558, 702, 1020
BlsI GCNGC 7 cut(s) 68, 100, 308, 313, 559, 703, 1021
BmcAI AGTACT 1 cut(s) 632
Bme1390I CCNGG 6 cut(s) 611, 766, 776, 797, 870, 876
Bme18I GGWCC 2 cut(s) 430, 981
BmgBI CACGTC 1 cut(s) 949
BmiI GGNNCC 7 cut(s) 81, 500, 694, 713, 853, 982, 1073
BmrFI CCNGG 6 cut(s) 611, 766, 776, 797, 870, 876
BmsI GCATC 5 cut(s) 115, 580, 876, 994, 1145
BpiI GAAGAC 1 cut(s) 293
Bpu10I CCTNAGC 2 cut(s) 746, 1038
BpuEI CTTGAG 2 cut(s) 494, 1144
BpuMI CCSGG 3 cut(s) 611, 766, 776
BsaAI YACGTR 2 cut(s) 407, 987
BsaHI GRCGYC 2 cut(s) 499, 614
BsaJI CCNNGG 6 cut(s) 75, 528, 774, 874, 1014, 1045
Bsc4I CCNNNNNNNGG 6 cut(s) 439, 817, 864, 875, 881, 1193
Bse118I RCCGGY 3 cut(s) 62, 85, 810
Bse1I ACTGG 3 cut(s) 281, 644, 1097
BseBI CCWGG 3 cut(s) 797, 870, 876
BseDI CCNNGG 6 cut(s) 75, 528, 774, 874, 1014, 1045
BseGI GGATG 3 cut(s) 130, 595, 891
BseLI CCNNNNNNNGG 6 cut(s) 439, 817, 864, 875, 881, 1193
BseMII CTCAG 2 cut(s) 1052, 1090
BseNI ACTGG 3 cut(s) 281, 644, 1097
BseRI GAGGAG 5 cut(s) 230, 530, 531, 536, 539
BseSI GKGCMC 2 cut(s) 696, 1075
BseX3I CGGCCG 4 cut(s) 72, 573, 808, 1017
BseXI GCAGC 3 cut(s) 53, 323, 713
BsgI GTGCAG 1 cut(s) 52
Bsh1236I CGCG 2 cut(s) 506, 1022
Bsh1285I CGRYCG 5 cut(s) 75, 576, 811, 815, 1020
BshNI GGYRCC 1 cut(s) 498
BsiEI CGRYCG 5 cut(s) 75, 576, 811, 815, 1020
BsiHKAI GWGCWC 1 cut(s) 825
BsiSI CCGG 7 cut(s) 63, 86, 122, 611, 765, 776, 811
BsiWI CGTACG 1 cut(s) 996
BslI CCNNNNNNNGG 6 cut(s) 439, 817, 864, 875, 881, 1193
BsmAI GTCTC 1 cut(s) 902
BsmBI CGTCTC 1 cut(s) 902
Bsp120I GGGCCC 2 cut(s) 692, 1071
Bsp1286I GDGCHC 3 cut(s) 696, 825, 1075
Bsp143I GATC 5 cut(s) 51, 602, 642, 756, 1111
BspCNI CTCAG 2 cut(s) 1051, 1089
BspFNI CGCG 2 cut(s) 506, 1022
BspLI GGNNCC 7 cut(s) 81, 500, 694, 713, 853, 982, 1073
BspMI ACCTGC 1 cut(s) 492
BspPI GGATC 3 cut(s) 597, 650, 764
BspT107I GGYRCC 1 cut(s) 498
BsrFI RCCGGY 3 cut(s) 62, 85, 810
BsrI ACTGG 3 cut(s) 281, 644, 1097
BssAI RCCGGY 3 cut(s) 62, 85, 810
BssECI CCNNGG 6 cut(s) 75, 528, 774, 874, 1014, 1045
BssMI GATC 5 cut(s) 51, 602, 642, 756, 1111
BssNI GRCGYC 2 cut(s) 499, 614
BssT1I CCWWGG 1 cut(s) 1045
Bst2UI CCWGG 3 cut(s) 797, 870, 876
Bst4CI ACNGT 2 cut(s) 937, 958
BstACI GRCGYC 2 cut(s) 499, 614
BstBAI YACGTR 2 cut(s) 407, 987
BstC8I GCNNGC 3 cut(s) 7, 346, 535
BstDEI CTNAG 3 cut(s) 746, 1038, 1076
BstDSI CCRYGG 2 cut(s) 528, 1014
BstF5I GGATG 3 cut(s) 130, 595, 891
BstFNI CGCG 2 cut(s) 506, 1022
BstH2I RGCGCY 1 cut(s) 502
BstHHI GCGC 4 cut(s) 311, 501, 508, 932
BstKTI GATC 5 cut(s) 54, 605, 645, 759, 1114
BstMAI GTCTC 1 cut(s) 902
BstMBI GATC 5 cut(s) 51, 602, 642, 756, 1111
BstMCI CGRYCG 5 cut(s) 75, 576, 811, 815, 1020
BstMWI GCNNNNNNNGC 5 cut(s) 86, 95, 350, 359, 505
BstNI CCWGG 3 cut(s) 797, 870, 876
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 6 cut(s) 609, 764, 774, 795, 868, 874
BstSFI CTRYAG 1 cut(s) 936
BstSLI GKGCMC 2 cut(s) 696, 1075
BstUI CGCG 2 cut(s) 506, 1022
BstV1I GCAGC 3 cut(s) 53, 323, 713
BstV2I GAAGAC 1 cut(s) 293
BstZI CGGCCG 4 cut(s) 72, 573, 808, 1017
BsuI GTATCC 3 cut(s) 762, 970, 1052
BtgI CCRYGG 2 cut(s) 528, 1014
BtrI CACGTC 1 cut(s) 949
BtsCI GGATG 3 cut(s) 130, 595, 891
BtsIMutI CAGTG 3 cut(s) 288, 620, 954
BveI ACCTGC 1 cut(s) 492
Cac8I GCNNGC 3 cut(s) 7, 346, 535
CfoI GCGC 4 cut(s) 311, 501, 508, 932
Cfr10I RCCGGY 3 cut(s) 62, 85, 810
CseI GACGC 2 cut(s) 603, 919
Csp6I GTAC 4 cut(s) 326, 631, 973, 997
CspCI CAANNNNNGTGG 2 cut(s) 844, 879
CviAII CATG 2 cut(s) 23, 753
CviQI GTAC 4 cut(s) 326, 631, 973, 997
DdeI CTNAG 3 cut(s) 746, 1038, 1076
DinI GGCGCC 1 cut(s) 500
DpnI GATC 5 cut(s) 53, 604, 644, 758, 1113
DpnII GATC 5 cut(s) 51, 602, 642, 756, 1111
DrdI GACNNNNNNGTC 1 cut(s) 295
DseDI GACNNNNNNGTC 1 cut(s) 295
EaeI YGGCCR 4 cut(s) 72, 573, 808, 1017
EagI CGGCCG 4 cut(s) 72, 573, 808, 1017
EciI GGCGGA 3 cut(s) 254, 267, 1209
Ecl136II GAGCTC 1 cut(s) 823
EclXI CGGCCG 4 cut(s) 72, 573, 808, 1017
Eco130I CCWWGG 1 cut(s) 1045
Eco24I GRGCYC 3 cut(s) 696, 825, 1075
Eco47I GGWCC 2 cut(s) 430, 981
Eco52I CGGCCG 4 cut(s) 72, 573, 808, 1017
Eco53kI GAGCTC 1 cut(s) 823
Eco57I CTGAAG 1 cut(s) 123
Eco72I CACGTG 1 cut(s) 987
EcoICRI GAGCTC 1 cut(s) 823
EcoO109I RGGNCCY 3 cut(s) 692, 1042, 1072
EcoRI GAATTC 2 cut(s) 443, 1116
EcoRII CCWGG 3 cut(s) 795, 868, 874
EcoT14I CCWWGG 1 cut(s) 1045
EcoT38I GRGCYC 3 cut(s) 696, 825, 1075
EgeI GGCGCC 1 cut(s) 500
EheI GGCGCC 1 cut(s) 500
ErhI CCWWGG 1 cut(s) 1045
Esp3I CGTCTC 1 cut(s) 902
FaeI CATG 2 cut(s) 26, 756
FatI CATG 2 cut(s) 22, 752
FauI CCCGC 1 cut(s) 542
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 7 cut(s) 67, 99, 307, 312, 558, 702, 1020
FokI GGATG 3 cut(s) 137, 602, 898
FriOI GRGCYC 3 cut(s) 696, 825, 1075
Fsp4HI GCNGC 7 cut(s) 67, 99, 307, 312, 558, 702, 1020
GlaI GCGC 4 cut(s) 310, 500, 507, 931
GluI GCNGC 7 cut(s) 67, 99, 307, 312, 558, 702, 1020
HaeII RGCGCY 1 cut(s) 502
HapII CCGG 7 cut(s) 63, 86, 122, 611, 765, 776, 811
HgaI GACGC 2 cut(s) 603, 919
HhaI GCGC 4 cut(s) 311, 501, 508, 932
Hin1I GRCGYC 2 cut(s) 499, 614
Hin1II CATG 2 cut(s) 26, 756
Hin6I GCGC 4 cut(s) 309, 499, 506, 930
HinP1I GCGC 4 cut(s) 309, 499, 506, 930
HincII GTYRAC 1 cut(s) 1204
HindII GTYRAC 1 cut(s) 1204
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 1 cut(s) 518
HpaII CCGG 7 cut(s) 63, 86, 122, 611, 765, 776, 811
HphI GGTGA 4 cut(s) 103, 154, 244, 1003
Hpy166II GTNNAC 6 cut(s) 374, 565, 730, 952, 984, 1204
Hpy188I TCNGA 1 cut(s) 602
Hpy188III TCNNGA 1 cut(s) 907
Hpy8I GTNNAC 6 cut(s) 374, 565, 730, 952, 984, 1204
Hpy99I CGWCG 1 cut(s) 619
HpyAV CCTTC 4 cut(s) 120, 147, 463, 1018
HpyCH4III ACNGT 2 cut(s) 937, 958
HpyCH4IV ACGT 5 cut(s) 370, 406, 726, 948, 986
HpyCH4V TGCA 5 cut(s) 22, 69, 404, 701, 1215
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 95, 350, 359, 505
HpyF3I CTNAG 3 cut(s) 746, 1038, 1076
HpySE526I ACGT 5 cut(s) 370, 406, 726, 948, 986
Hsp92I GRCGYC 2 cut(s) 499, 614
Hsp92II CATG 2 cut(s) 26, 756
HspAI GCGC 4 cut(s) 309, 499, 506, 930
KasI GGCGCC 1 cut(s) 498
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 5 cut(s) 51, 602, 642, 756, 1111
LmnI GCTCC 7 cut(s) 85, 243, 678, 820, 828, 851, 878
Lsp1109I GCAGC 3 cut(s) 53, 323, 713
LweI GCATC 5 cut(s) 115, 580, 876, 994, 1145
MaeII ACGT 5 cut(s) 370, 406, 726, 948, 986
MaeIII GTNAC 5 cut(s) 199, 366, 618, 722, 1088
MalI GATC 5 cut(s) 53, 604, 644, 758, 1113
MboI GATC 5 cut(s) 51, 602, 642, 756, 1111
MboII GAAGA 5 cut(s) 151, 298, 574, 1036, 1108
MhlI GDGCHC 3 cut(s) 696, 825, 1075
MluCI AATT 8 cut(s) 209, 223, 247, 377, 443, 782, 1116, 1197
Mly113I GGCGCC 1 cut(s) 499
MlyI GAGTC 1 cut(s) 527
MspI CCGG 7 cut(s) 63, 86, 122, 611, 765, 776, 811
MspR9I CCNGG 6 cut(s) 611, 766, 776, 797, 870, 876
MvaI CCWGG 3 cut(s) 797, 870, 876
MvnI CGCG 2 cut(s) 506, 1022
MwoI GCNNNNNNNGC 5 cut(s) 86, 95, 350, 359, 505
NarI GGCGCC 1 cut(s) 499
NciI CCSGG 3 cut(s) 611, 766, 776
NdeII GATC 5 cut(s) 51, 602, 642, 756, 1111
NlaIII CATG 2 cut(s) 26, 756
NlaIV GGNNCC 7 cut(s) 81, 500, 694, 713, 853, 982, 1073
NmeAIII GCCGAG 2 cut(s) 100, 551
NmuCI GTSAC 4 cut(s) 199, 366, 618, 1088
NspI RCATGY 1 cut(s) 26
PaqCI CACCTGC 1 cut(s) 492
PcsI WCGNNNNNNNCGW 1 cut(s) 992
Pfl23II CGTACG 1 cut(s) 996
PkrI GCNGC 7 cut(s) 68, 100, 308, 313, 559, 703, 1021
PleI GAGTC 1 cut(s) 526
PluTI GGCGCC 1 cut(s) 502
PmaCI CACGTG 1 cut(s) 987
PmlI CACGTG 1 cut(s) 987
PpsI GAGTC 1 cut(s) 526
Ppu21I YACGTR 2 cut(s) 407, 987
Psp124BI GAGCTC 1 cut(s) 825
Psp6I CCWGG 3 cut(s) 795, 868, 874
PspCI CACGTG 1 cut(s) 987
PspGI CCWGG 3 cut(s) 795, 868, 874
PspLI CGTACG 1 cut(s) 996
PspN4I GGNNCC 7 cut(s) 81, 500, 694, 713, 853, 982, 1073
PspOMI GGGCCC 2 cut(s) 692, 1071
RsaI GTAC 4 cut(s) 327, 632, 974, 998
RsaNI GTAC 4 cut(s) 326, 631, 973, 997
SacI GAGCTC 1 cut(s) 825
SatI GCNGC 7 cut(s) 67, 99, 307, 312, 558, 702, 1020
Sau3AI GATC 5 cut(s) 51, 602, 642, 756, 1111
ScaI AGTACT 1 cut(s) 632
SchI GAGTC 1 cut(s) 527
ScrFI CCNGG 6 cut(s) 611, 766, 776, 797, 870, 876
SduI GDGCHC 3 cut(s) 696, 825, 1075
SfaNI GCATC 5 cut(s) 115, 580, 876, 994, 1145
SfcI CTRYAG 1 cut(s) 936
SfoI GGCGCC 1 cut(s) 500
SgrAI CRCCGGYG 1 cut(s) 85
SinI GGWCC 2 cut(s) 430, 981
SmlI CTYRAG 2 cut(s) 509, 1159
SmoI CTYRAG 2 cut(s) 509, 1159
Sse9I AATT 8 cut(s) 209, 223, 247, 377, 443, 782, 1116, 1197
SspDI GGCGCC 1 cut(s) 498
SstI GAGCTC 1 cut(s) 825
StyD4I CCNGG 6 cut(s) 609, 764, 774, 795, 868, 874
StyI CCWWGG 1 cut(s) 1045
TaaI ACNGT 2 cut(s) 937, 958
TaiI ACGT 5 cut(s) 373, 409, 729, 951, 989
TaqI TCGA 3 cut(s) 906, 1114, 1139
TasI AATT 8 cut(s) 209, 223, 247, 377, 443, 782, 1116, 1197
TatI WGTACW 1 cut(s) 630
TauI GCSGC 4 cut(s) 101, 309, 560, 1022
TscAI CASTG 3 cut(s) 288, 627, 961
TseFI GTSAC 4 cut(s) 199, 366, 618, 1088
TseI GCWGC 3 cut(s) 66, 311, 701
Tsp45I GTSAC 4 cut(s) 199, 366, 618, 1088
TspDTI ATGAA 2 cut(s) 370, 482
TspGWI ACGGA 1 cut(s) 952
TspRI CASTG 3 cut(s) 288, 627, 961
VpaK11BI GGWCC 2 cut(s) 430, 981
XapI RAATTY 4 cut(s) 209, 223, 443, 1116
XceI RCATGY 1 cut(s) 26
ZrmI AGTACT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.