RLG00000015750

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
1180587 .. 1181830
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015750

Sequence Viewer

Length: 1146 bp
ATGCCAAGCCTCAACAACTTTGTGCATCTTATTATTCTTTTTCTCCTATGTTGCTTGACGATGATCACAACCGGAAGTGCGGCAGAGTCCTCGTCGGATAACCCTCCAGTGGTGAAATCAGGCTATTATCCACCTTCGGATAATTTCCCACCTTCAGCTATAGACACTACTTTCTTTACACACGTCTACTATGCCTTTCTTGTGCCGAGCAACGTTACATTTAGATTTGAGCTGTCAAATGAAACGGCTTTACTCCTCTCGAACTTCACCACCGCCCTCCGCCACAAGACTCCGCCGGTGAAGACCATGTTGTCCATAGGTGGCGGTGCCGGAGAAGAAGTGGCACACATCTTTGCTAGCATGGCATCAAACCCGTCCTCACGGTCAAACTTCATTGACTCGGCTATAGAAGTTGCACGTAAGTTTGGGTTTGATGGGCTAGACCTGGACTGGGAATACCCTGGAAGCCCAATAGAAATGAAGGCCTTGGGCCACTTGCTAAAGCAATGGCGCCGCGAAATCAAGAAAGAGGCCCAGGCCACAAATAGCCAGCCTCTACTGCTCACCGCCGCCGTCTACTTCTCCGCCGAGTTCTTCTTGGACGTCGTCATCCGCTCGTACCCTATTAAGTACATGGAAAAGTACTTGGATTGGGCCAATGTAATGTGCTTCGACTATCATGGGGCTTGGAGCAATATTACAGGGCCCAATGCACCATTATTTGACCCAAATAGTAATGTGAACTCCATCTACGGGCTTAGGTCATGGATCAATGGTGGCATGACCCCAAACAAGCTCGTAATGGGCTTGCCACTCTATGGCCGGACATGGGTGCTCAAAGACCCTAAAGATAACGGTATTGGATCCATTGCTATAGGCCCAGGCCCAGGAAATGGTTCACTAGGCTTCAACGAGTTGGAGGCCCTAAATGAGGAGTCGAGCGCCACCGTGGTATATGACGCCGACACCGTATCGGTATATTCTGTTAATGGGTCGAGTTGGATTGCATTTGATGATGCCTTTACAACAACCTCCAAGATAGGGTTTGCTCAAGCTCTTGGGCTTCGTGGGTACTTCTTTTGGTCCATCGTTCATGATAGCAATTGGAAGATCTCGGCCCAAGCTTCAAAATCATGGATTCTTTGA

Protein Analysis

382

Amino Acids

41.93

Weight (kDa)

5.39

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 41 - 366 1.2e-66 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 310
AatII GACGTC 1 cut(s) 606
AccB1I GGYRCC 2 cut(s) 326, 510
AccB7I CCANNNNNTGG 2 cut(s) 818, 893
AccBSI CCGCTC 1 cut(s) 615
AccI GTMKAC 2 cut(s) 186, 576
AccII CGCG 1 cut(s) 516
AclI AACGTT 1 cut(s) 213
AclWI GGATC 3 cut(s) 776, 858, 871
AcoI YGGCCR 1 cut(s) 820
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 3 cut(s) 511, 603, 960
AfaI GTAC 4 cut(s) 620, 632, 644, 1073
AfiI CCNNNNNNNGG 9 cut(s) 109, 451, 753, 818, 829, 887, 893, 931, 1041
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 2 cut(s) 910, 1128
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 5 cut(s) 444, 460, 534, 880, 886
AluBI AGCT 5 cut(s) 158, 232, 796, 1055, 1124
AluI AGCT 5 cut(s) 158, 232, 796, 1055, 1124
Alw21I GWGCWC 1 cut(s) 837
AlwI GGATC 3 cut(s) 776, 858, 871
ApaI GGGCCC 1 cut(s) 708
Asp700I GAANNNNTTC 1 cut(s) 895
AspLEI GCGC 2 cut(s) 513, 944
AsuHPI GGTGA 4 cut(s) 124, 259, 310, 556
AsuNHI GCTAGC 1 cut(s) 356
AvaII GGWCC 1 cut(s) 1083
BaeGI GKGCMC 1 cut(s) 708
BamHI GGATCC 1 cut(s) 863
BanI GGYRCC 2 cut(s) 326, 510
BanII GRGCYC 1 cut(s) 708
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 837
BccI CCATC 3 cut(s) 428, 755, 1094
BceAI ACGGC 2 cut(s) 261, 557
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BciT130I CCWGG 5 cut(s) 446, 462, 536, 882, 888
BclI TGATCA 1 cut(s) 63
BfaI CTAG 3 cut(s) 357, 440, 902
BfmI CTRYAG 3 cut(s) 159, 405, 873
BfoI RGCGCY 2 cut(s) 514, 945
BglII AGATCT 1 cut(s) 1110
BisI GCNGC 3 cut(s) 81, 514, 570
BlsI GCNGC 3 cut(s) 82, 515, 571
BmcAI AGTACT 1 cut(s) 644
Bme1390I CCNGG 5 cut(s) 446, 462, 536, 882, 888
Bme18I GGWCC 1 cut(s) 1083
BmgBI CACGTC 1 cut(s) 184
BmiI GGNNCC 4 cut(s) 328, 512, 706, 865
BmrFI CCNGG 5 cut(s) 446, 462, 536, 882, 888
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 3 cut(s) 34, 374, 1006
BmtI GCTAGC 1 cut(s) 360
BmuI ACTGGG 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 308
BpmI CTGGAG 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 758
BpuEI CTTGAG 1 cut(s) 1035
BsaAI YACGTR 1 cut(s) 419
BsaHI GRCGYC 3 cut(s) 511, 603, 960
BsaJI CCNNGG 6 cut(s) 460, 486, 534, 880, 886, 948
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 9 cut(s) 109, 451, 753, 818, 829, 887, 893, 931, 1041
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 2 cut(s) 107, 455
Bse3DI GCAATG 2 cut(s) 512, 867
BseBI CCWGG 5 cut(s) 446, 462, 536, 882, 888
BseDI CCNNGG 6 cut(s) 460, 486, 534, 880, 886, 948
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 9 cut(s) 109, 451, 753, 818, 829, 887, 893, 931, 1041
BseMI GCAATG 2 cut(s) 512, 867
BseNI ACTGG 2 cut(s) 107, 455
BseRI GAGGAG 2 cut(s) 245, 947
BseSI GKGCMC 1 cut(s) 708
Bsh1236I CGCG 1 cut(s) 516
BshNI GGYRCC 2 cut(s) 326, 510
BsiHKAI GWGCWC 1 cut(s) 837
BsiSI CCGG 4 cut(s) 72, 296, 330, 823
BslI CCNNNNNNNGG 9 cut(s) 109, 451, 753, 818, 829, 887, 893, 931, 1041
Bsp120I GGGCCC 1 cut(s) 704
Bsp1286I GDGCHC 2 cut(s) 708, 837
Bsp143I GATC 4 cut(s) 63, 768, 863, 1110
BspFNI CGCG 1 cut(s) 516
BspHI TCATGA 1 cut(s) 1093
BspLI GGNNCC 4 cut(s) 328, 512, 706, 865
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 3 cut(s) 776, 858, 871
BspT107I GGYRCC 2 cut(s) 326, 510
BsrBI CCGCTC 1 cut(s) 615
BsrDI GCAATG 2 cut(s) 512, 867
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 2 cut(s) 107, 455
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 6 cut(s) 460, 486, 534, 880, 886, 948
BssMI GATC 4 cut(s) 63, 768, 863, 1110
BssNI GRCGYC 3 cut(s) 511, 603, 960
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 5 cut(s) 446, 462, 536, 882, 888
Bst4CI ACNGT 4 cut(s) 384, 857, 949, 970
BstACI GRCGYC 3 cut(s) 511, 603, 960
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 3 cut(s) 358, 551, 809
BstDEI CTNAG 1 cut(s) 758
BstDSI CCRYGG 1 cut(s) 948
BstENI CCTNNNNNAGG 1 cut(s) 929
BstF5I GGATG 1 cut(s) 609
BstFNI CGCG 1 cut(s) 516
BstH2I RGCGCY 2 cut(s) 514, 945
BstHHI GCGC 2 cut(s) 513, 944
BstKTI GATC 4 cut(s) 66, 771, 866, 1113
BstMBI GATC 4 cut(s) 63, 768, 863, 1110
BstMWI GCNNNNNNNGC 2 cut(s) 362, 559
BstNI CCWGG 5 cut(s) 446, 462, 536, 882, 888
BstSCI CCNGG 5 cut(s) 444, 460, 534, 880, 886
BstSFI CTRYAG 3 cut(s) 159, 405, 873
BstSLI GKGCMC 1 cut(s) 708
BstUI CGCG 1 cut(s) 516
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 2 cut(s) 863, 1110
BstYI RGATCY 2 cut(s) 863, 1110
BtgI CCRYGG 1 cut(s) 948
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 1 cut(s) 609
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 3 cut(s) 358, 551, 809
CciI TCATGA 1 cut(s) 1093
CfoI GCGC 2 cut(s) 513, 944
Cfr10I RCCGGY 1 cut(s) 295
CseI GACGC 1 cut(s) 968
Csp6I GTAC 4 cut(s) 619, 631, 643, 1072
CviAII CATG 9 cut(s) 307, 361, 634, 680, 765, 781, 828, 1094, 1134
CviQI GTAC 4 cut(s) 619, 631, 643, 1072
DdeI CTNAG 1 cut(s) 758
DinI GGCGCC 1 cut(s) 512
DpnI GATC 4 cut(s) 65, 770, 865, 1112
DpnII GATC 4 cut(s) 63, 768, 863, 1110
DrdI GACNNNNNNGTC 1 cut(s) 310
DseDI GACNNNNNNGTC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 820
EciI GGCGGA 3 cut(s) 269, 282, 574
Eco130I CCWWGG 1 cut(s) 486
Eco147I AGGCCT 1 cut(s) 485
Eco24I GRGCYC 1 cut(s) 708
Eco47I GGWCC 1 cut(s) 1083
Eco57I CTGAAG 1 cut(s) 138
EcoNI CCTNNNNNAGG 1 cut(s) 929
EcoO109I RGGNCCY 2 cut(s) 704, 922
EcoRII CCWGG 5 cut(s) 444, 460, 534, 880, 886
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 708
EgeI GGCGCC 1 cut(s) 512
EheI GGCGCC 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 9 cut(s) 310, 364, 637, 683, 768, 784, 831, 1097, 1137
FatI CATG 9 cut(s) 306, 360, 633, 679, 764, 780, 827, 1093, 1133
FbaI TGATCA 1 cut(s) 63
FblI GTMKAC 2 cut(s) 186, 576
Fnu4HI GCNGC 3 cut(s) 81, 514, 570
FokI GGATG 1 cut(s) 596
FriOI GRGCYC 1 cut(s) 708
Fsp4HI GCNGC 3 cut(s) 81, 514, 570
FspBI CTAG 3 cut(s) 357, 440, 902
GlaI GCGC 2 cut(s) 512, 943
GluI GCNGC 3 cut(s) 81, 514, 570
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 2 cut(s) 514, 945
HapII CCGG 4 cut(s) 72, 296, 330, 823
HgaI GACGC 1 cut(s) 968
HhaI GCGC 2 cut(s) 513, 944
Hin1I GRCGYC 3 cut(s) 511, 603, 960
Hin1II CATG 9 cut(s) 310, 364, 637, 683, 768, 784, 831, 1097, 1137
Hin6I GCGC 2 cut(s) 511, 942
HinP1I GCGC 2 cut(s) 511, 942
HindIII AAGCTT 1 cut(s) 1122
HinfI GANTC 5 cut(s) 86, 289, 398, 935, 1138
HpaII CCGG 4 cut(s) 72, 296, 330, 823
HphI GGTGA 4 cut(s) 124, 259, 310, 556
Hpy166II GTNNAC 4 cut(s) 187, 577, 742, 899
Hpy188I TCNGA 2 cut(s) 97, 139
Hpy188III TCNNGA 3 cut(s) 259, 523, 1094
Hpy8I GTNNAC 4 cut(s) 187, 577, 742, 899
Hpy99I CGWCG 2 cut(s) 97, 608
HpyAV CCTTC 3 cut(s) 144, 162, 475
HpyCH4III ACNGT 4 cut(s) 384, 857, 949, 970
HpyCH4IV ACGT 4 cut(s) 183, 213, 418, 603
HpyCH4V TGCA 4 cut(s) 25, 416, 713, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 362, 559
HpyF3I CTNAG 1 cut(s) 758
HpySE526I ACGT 4 cut(s) 183, 213, 418, 603
Hsp92I GRCGYC 3 cut(s) 511, 603, 960
Hsp92II CATG 9 cut(s) 310, 364, 637, 683, 768, 784, 831, 1097, 1137
HspAI GCGC 2 cut(s) 511, 942
KasI GGCGCC 1 cut(s) 510
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 4 cut(s) 63, 768, 863, 1110
LmnI GCTCC 1 cut(s) 690
LweI GCATC 3 cut(s) 34, 374, 1006
MaeI CTAG 3 cut(s) 357, 440, 902
MaeII ACGT 4 cut(s) 183, 213, 418, 603
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 65, 770, 865, 1112
MbiI CCGCTC 1 cut(s) 615
MboI GATC 4 cut(s) 63, 768, 863, 1110
MboII GAAGA 4 cut(s) 313, 347, 586, 1120
MfeI CAATTG 1 cut(s) 1102
MflI RGATCY 2 cut(s) 863, 1110
MhlI GDGCHC 2 cut(s) 708, 837
MluCI AATT 2 cut(s) 142, 1102
Mly113I GGCGCC 1 cut(s) 511
MlyI GAGTC 4 cut(s) 95, 283, 392, 944
MmeI TCCRAC 3 cut(s) 75, 897, 980
MroXI GAANNNNTTC 1 cut(s) 895
MseI TTAA 2 cut(s) 627, 987
MspI CCGG 4 cut(s) 72, 296, 330, 823
MspR9I CCNGG 5 cut(s) 446, 462, 536, 882, 888
MunI CAATTG 1 cut(s) 1102
MvaI CCWGG 5 cut(s) 446, 462, 536, 882, 888
MvnI CGCG 1 cut(s) 516
MwoI GCNNNNNNNGC 2 cut(s) 362, 559
NarI GGCGCC 1 cut(s) 511
NdeII GATC 4 cut(s) 63, 768, 863, 1110
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 9 cut(s) 310, 364, 637, 683, 768, 784, 831, 1097, 1137
NlaIV GGNNCC 4 cut(s) 328, 512, 706, 865
NmeAIII GCCGAG 4 cut(s) 231, 380, 613, 1094
PagI TCATGA 1 cut(s) 1093
PceI AGGCCT 1 cut(s) 485
PcsI WCGNNNNNNNCGW 1 cut(s) 966
PdmI GAANNNNTTC 1 cut(s) 895
PfeI GAWTC 1 cut(s) 1138
PflFI GACNNNGTC 1 cut(s) 605
PflMI CCANNNNNTGG 2 cut(s) 818, 893
PkrI GCNGC 3 cut(s) 82, 515, 571
PleI GAGTC 4 cut(s) 94, 283, 392, 943
PluTI GGCGCC 1 cut(s) 514
PpsI GAGTC 4 cut(s) 94, 283, 392, 943
Ppu21I YACGTR 1 cut(s) 419
Psp1406I AACGTT 1 cut(s) 213
Psp6I CCWGG 5 cut(s) 444, 460, 534, 880, 886
PspGI CCWGG 5 cut(s) 444, 460, 534, 880, 886
PspN4I GGNNCC 4 cut(s) 328, 512, 706, 865
PspOMI GGGCCC 1 cut(s) 704
PsrI GAACNNNNNNTAC 2 cut(s) 734, 766
PsuI RGATCY 2 cut(s) 863, 1110
PsyI GACNNNGTC 1 cut(s) 605
RsaI GTAC 4 cut(s) 620, 632, 644, 1073
RsaNI GTAC 4 cut(s) 619, 631, 643, 1072
SaqAI TTAA 2 cut(s) 627, 987
SatI GCNGC 3 cut(s) 81, 514, 570
Sau3AI GATC 4 cut(s) 63, 768, 863, 1110
ScaI AGTACT 1 cut(s) 644
SchI GAGTC 4 cut(s) 95, 283, 392, 944
ScrFI CCNGG 5 cut(s) 446, 462, 536, 882, 888
SduI GDGCHC 2 cut(s) 708, 837
SfaNI GCATC 3 cut(s) 34, 374, 1006
SfcI CTRYAG 3 cut(s) 159, 405, 873
SfoI GGCGCC 1 cut(s) 512
SgrAI CRCCGGYG 1 cut(s) 295
SinI GGWCC 1 cut(s) 1083
SmlI CTYRAG 1 cut(s) 1050
SmoI CTYRAG 1 cut(s) 1050
Sse9I AATT 2 cut(s) 142, 1102
SseBI AGGCCT 1 cut(s) 485
SspDI GGCGCC 1 cut(s) 510
SspI AATATT 1 cut(s) 697
SspMI CTAG 3 cut(s) 357, 440, 902
StuI AGGCCT 1 cut(s) 485
StyD4I CCNGG 5 cut(s) 444, 460, 534, 880, 886
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 4 cut(s) 384, 857, 949, 970
TaiI ACGT 4 cut(s) 186, 216, 421, 606
TaqI TCGA 4 cut(s) 260, 672, 938, 995
TasI AATT 2 cut(s) 142, 1102
TatI WGTACW 2 cut(s) 630, 642
TauI GCSGC 3 cut(s) 83, 516, 572
TfiI GAWTC 1 cut(s) 1138
Tru1I TTAA 2 cut(s) 627, 987
Tru9I TTAA 2 cut(s) 627, 987
TscAI CASTG 1 cut(s) 114
TspDTI ATGAA 4 cut(s) 255, 382, 494, 1082
TspRI CASTG 1 cut(s) 114
Tth111I GACNNNGTC 1 cut(s) 605
Van91I CCANNNNNTGG 2 cut(s) 818, 893
VpaK11BI GGWCC 1 cut(s) 1083
XagI CCTNNNNNAGG 1 cut(s) 929
XmiI GTMKAC 2 cut(s) 186, 576
XmnI GAANNNNTTC 1 cut(s) 895
XspI CTAG 3 cut(s) 357, 440, 902
ZraI GACGTC 1 cut(s) 604
ZrmI AGTACT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.