Rw2G001420

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
1213937 .. 1215177
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G001420.1

Sequence Viewer

Length: 1041 bp
ATGCCAAGCCTCAACAACTTTGTGCACCTTATTATTCTTTTTCTCCTATGTTGCTTGACGATGATCACAACCGGAAGTGCAGCAGAGCCCGCGTCGGAAAACCCTCCAGCGGTGAAATCAGGCTATTATCCACCTTCGGATAATTTCCCACCTTCAGCCATAGACACTACTTTCTTTACTCACGTCTACTATGCCTTTCTTGTGCCGAGCAACGTTACATTTAGATTTGAGCTGTCAAATGAAACGGCTTTACTCCTCTCGAACTTCACCACCGCCCTCCGCCACAAGACTCCGCCAGTGAAGACCATGTTGTCCATAGGTGGCGGTGCCGGAGAAGAAGTGGCACACATCTTTGCTAGCATGGCATCAAACCCGTCCTCACGGTCAAACTTCATTGACTCGGCTATAGAAGTTGCACGTAAGTTTGGGTTTGATGGGCTGGACCTCGACTGGGAATACCCTGAAAGCCCAATAGAAATGAAGGCCTTGGGCCACTTGCTAAAACAATGGCGCCGCGAAATCAAGAAAGAGGCCCAGGCTACAAATAGACAACCTCTACTGCTCACCGCCGCTGTCTACTTCTCCGCCGAGTTCTTCTTGGATGCCGTCATCCGCTCGTACCCGATTAAGTACATGGAAAACAATATTACAGGGCCCAATGCACCATTATTTGACCCAAATAGTAATGTGAACTCGGTTTACGGGCTTAGGTCATGGATCAACGGTGGCATGACCCCAAACAAGCTCGTAATGGGCTTGCCACTCTATGGCCGGACATGGGAGCTCAAAGACCCTAAAGATAACGGTATTGGATCCATTGCTATAGGCCCAGGCCCAGGAAATGGTTCACTCGGCTTCAACGAGTTGGAGGCCCTAAATAAGGAGTCGACCGCCACCGTGGTATATGACGCCGACACCGTATCGGTATATTCTATAGGGTTTGCTCAAGCTCTTGGGCTTCGTGGGTACTTCTTTTGGGCCATCATTCATGATAGCAATTGGAAGATCTCGGCCCAAGCTTCAAAGTCATGGATTCTTTGA

Protein Analysis

346

Amino Acids

38.04

Weight (kDa)

5.72

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 41 - 315 8e-44 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 310
AccB1I GGYRCC 2 cut(s) 326, 510
AccB7I CCANNNNNTGG 2 cut(s) 767, 842
AccBSI CCGCTC 1 cut(s) 615
AccI GTMKAC 3 cut(s) 186, 576, 887
AccII CGCG 2 cut(s) 92, 516
AclI AACGTT 1 cut(s) 213
AclWI GGATC 3 cut(s) 725, 807, 820
AcoI YGGCCR 1 cut(s) 769
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 2 cut(s) 511, 909
AfaI GTAC 3 cut(s) 620, 632, 968
AfiI CCNNNNNNNGG 7 cut(s) 109, 451, 767, 778, 836, 842, 880
AgsI TTSAA 2 cut(s) 859, 1023
AjiI CACGTC 1 cut(s) 184
AjnI CCWGG 3 cut(s) 534, 829, 835
AluBI AGCT 5 cut(s) 232, 745, 784, 950, 1019
AluI AGCT 5 cut(s) 232, 745, 784, 950, 1019
Alw21I GWGCWC 2 cut(s) 27, 786
Alw44I GTGCAC 1 cut(s) 23
AlwI GGATC 3 cut(s) 725, 807, 820
ApaI GGGCCC 1 cut(s) 657
ApaLI GTGCAC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 844
AspLEI GCGC 1 cut(s) 513
AsuHPI GGTGA 3 cut(s) 124, 259, 556
AsuNHI GCTAGC 1 cut(s) 356
AvaII GGWCC 1 cut(s) 442
BaeGI GKGCMC 2 cut(s) 27, 657
BamHI GGATCC 1 cut(s) 812
BanI GGYRCC 2 cut(s) 326, 510
BanII GRGCYC 3 cut(s) 90, 657, 786
BbsI GAAGAC 1 cut(s) 308
Bbv12I GWGCWC 2 cut(s) 27, 786
BbvI GCAGC 1 cut(s) 92
BccI CCATC 2 cut(s) 428, 989
BceAI ACGGC 2 cut(s) 261, 590
BciT130I CCWGG 3 cut(s) 536, 831, 837
BclI TGATCA 1 cut(s) 63
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 3 cut(s) 405, 822, 933
BfoI RGCGCY 1 cut(s) 514
BglII AGATCT 1 cut(s) 1005
BisI GCNGC 3 cut(s) 81, 514, 570
BlsI GCNGC 3 cut(s) 82, 515, 571
Bme1390I CCNGG 3 cut(s) 536, 831, 837
Bme18I GGWCC 1 cut(s) 442
BmgBI CACGTC 1 cut(s) 184
BmiI GGNNCC 4 cut(s) 328, 512, 655, 814
BmrFI CCNGG 3 cut(s) 536, 831, 837
BmrI ACTGGG 1 cut(s) 460
BmsI GCATC 2 cut(s) 374, 592
BmtI GCTAGC 1 cut(s) 360
BmuI ACTGGG 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 308
BpmI CTGGAG 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 707
BpuEI CTTGAG 1 cut(s) 930
BsaAI YACGTR 1 cut(s) 419
BsaHI GRCGYC 2 cut(s) 511, 909
BsaJI CCNNGG 5 cut(s) 486, 534, 829, 835, 897
BsaWI WCCGGW 1 cut(s) 71
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 7 cut(s) 109, 451, 767, 778, 836, 842, 880
Bse1I ACTGG 2 cut(s) 296, 455
Bse3DI GCAATG 1 cut(s) 816
BseBI CCWGG 3 cut(s) 536, 831, 837
BseDI CCNNGG 5 cut(s) 486, 534, 829, 835, 897
BseGI GGATG 2 cut(s) 607, 609
BseLI CCNNNNNNNGG 7 cut(s) 109, 451, 767, 778, 836, 842, 880
BseMI GCAATG 1 cut(s) 816
BseNI ACTGG 2 cut(s) 296, 455
BseRI GAGGAG 1 cut(s) 245
BseSI GKGCMC 2 cut(s) 27, 657
BseXI GCAGC 1 cut(s) 92
BsgI GTGCAG 1 cut(s) 99
Bsh1236I CGCG 2 cut(s) 92, 516
Bsh1285I CGRYCG 1 cut(s) 891
BshNI GGYRCC 2 cut(s) 326, 510
BsiEI CGRYCG 1 cut(s) 891
BsiHKAI GWGCWC 2 cut(s) 27, 786
BsiSI CCGG 3 cut(s) 72, 330, 772
BslI CCNNNNNNNGG 7 cut(s) 109, 451, 767, 778, 836, 842, 880
Bsp120I GGGCCC 1 cut(s) 653
Bsp1286I GDGCHC 4 cut(s) 27, 90, 657, 786
Bsp143I GATC 4 cut(s) 63, 717, 812, 1005
BspFNI CGCG 2 cut(s) 92, 516
BspHI TCATGA 1 cut(s) 988
BspLI GGNNCC 4 cut(s) 328, 512, 655, 814
BspOI GCTAGC 1 cut(s) 360
BspPI GGATC 3 cut(s) 725, 807, 820
BspT107I GGYRCC 2 cut(s) 326, 510
BsrBI CCGCTC 1 cut(s) 615
BsrDI GCAATG 1 cut(s) 816
BsrI ACTGG 2 cut(s) 296, 455
BssECI CCNNGG 5 cut(s) 486, 534, 829, 835, 897
BssMI GATC 4 cut(s) 63, 717, 812, 1005
BssNI GRCGYC 2 cut(s) 511, 909
BssT1I CCWWGG 1 cut(s) 486
Bst2UI CCWGG 3 cut(s) 536, 831, 837
Bst4CI ACNGT 5 cut(s) 384, 725, 806, 898, 919
BstACI GRCGYC 2 cut(s) 511, 909
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 3 cut(s) 90, 358, 758
BstDEI CTNAG 1 cut(s) 707
BstDSI CCRYGG 1 cut(s) 897
BstENI CCTNNNNNAGG 1 cut(s) 878
BstF5I GGATG 2 cut(s) 607, 609
BstFNI CGCG 2 cut(s) 92, 516
BstH2I RGCGCY 1 cut(s) 514
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 4 cut(s) 66, 720, 815, 1008
BstMBI GATC 4 cut(s) 63, 717, 812, 1005
BstMCI CGRYCG 1 cut(s) 891
BstMWI GCNNNNNNNGC 2 cut(s) 89, 362
BstNI CCWGG 3 cut(s) 536, 831, 837
BstSCI CCNGG 3 cut(s) 534, 829, 835
BstSFI CTRYAG 3 cut(s) 405, 822, 933
BstSLI GKGCMC 2 cut(s) 27, 657
BstUI CGCG 2 cut(s) 92, 516
BstV1I GCAGC 1 cut(s) 92
BstV2I GAAGAC 1 cut(s) 308
BstX2I RGATCY 2 cut(s) 812, 1005
BstYI RGATCY 2 cut(s) 812, 1005
BtgI CCRYGG 1 cut(s) 897
BtrI CACGTC 1 cut(s) 184
BtsCI GGATG 2 cut(s) 607, 609
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 3 cut(s) 90, 358, 758
CciI TCATGA 1 cut(s) 988
CfoI GCGC 1 cut(s) 513
CseI GACGC 2 cut(s) 81, 917
Csp6I GTAC 3 cut(s) 619, 631, 967
CviAII CATG 8 cut(s) 307, 361, 634, 714, 730, 777, 989, 1029
CviQI GTAC 3 cut(s) 619, 631, 967
DdeI CTNAG 1 cut(s) 707
DinI GGCGCC 1 cut(s) 512
DpnI GATC 4 cut(s) 65, 719, 814, 1007
DpnII GATC 4 cut(s) 63, 717, 812, 1005
DrdI GACNNNNNNGTC 1 cut(s) 310
DseDI GACNNNNNNGTC 1 cut(s) 310
EaeI YGGCCR 1 cut(s) 769
EciI GGCGGA 3 cut(s) 269, 282, 574
Ecl136II GAGCTC 1 cut(s) 784
Eco130I CCWWGG 1 cut(s) 486
Eco147I AGGCCT 1 cut(s) 485
Eco24I GRGCYC 3 cut(s) 90, 657, 786
Eco47I GGWCC 1 cut(s) 442
Eco53kI GAGCTC 1 cut(s) 784
Eco57I CTGAAG 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 784
EcoNI CCTNNNNNAGG 1 cut(s) 878
EcoO109I RGGNCCY 2 cut(s) 653, 871
EcoRII CCWGG 3 cut(s) 534, 829, 835
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 3 cut(s) 90, 657, 786
EgeI GGCGCC 1 cut(s) 512
EheI GGCGCC 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 8 cut(s) 310, 364, 637, 717, 733, 780, 992, 1032
FatI CATG 8 cut(s) 306, 360, 633, 713, 729, 776, 988, 1028
FauI CCCGC 1 cut(s) 97
FbaI TGATCA 1 cut(s) 63
FblI GTMKAC 3 cut(s) 186, 576, 887
Fnu4HI GCNGC 3 cut(s) 81, 514, 570
FokI GGATG 2 cut(s) 596, 614
FriOI GRGCYC 3 cut(s) 90, 657, 786
Fsp4HI GCNGC 3 cut(s) 81, 514, 570
FspBI CTAG 1 cut(s) 357
GlaI GCGC 1 cut(s) 512
GluI GCNGC 3 cut(s) 81, 514, 570
GsuI CTGGAG 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 514
HapII CCGG 3 cut(s) 72, 330, 772
HgaI GACGC 2 cut(s) 81, 917
HhaI GCGC 1 cut(s) 513
Hin1I GRCGYC 2 cut(s) 511, 909
Hin1II CATG 8 cut(s) 310, 364, 637, 717, 733, 780, 992, 1032
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HincII GTYRAC 1 cut(s) 888
HindII GTYRAC 1 cut(s) 888
HindIII AAGCTT 1 cut(s) 1017
HinfI GANTC 4 cut(s) 289, 398, 884, 1033
HpaII CCGG 3 cut(s) 72, 330, 772
HphI GGTGA 3 cut(s) 124, 259, 556
Hpy166II GTNNAC 7 cut(s) 25, 187, 577, 691, 700, 848, 888
Hpy188I TCNGA 2 cut(s) 97, 139
Hpy188III TCNNGA 3 cut(s) 259, 523, 989
Hpy8I GTNNAC 7 cut(s) 25, 187, 577, 691, 700, 848, 888
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 3 cut(s) 144, 162, 475
HpyCH4III ACNGT 5 cut(s) 384, 725, 806, 898, 919
HpyCH4IV ACGT 3 cut(s) 183, 213, 418
HpyCH4V TGCA 4 cut(s) 25, 80, 416, 662
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 362
HpyF3I CTNAG 1 cut(s) 707
HpySE526I ACGT 3 cut(s) 183, 213, 418
Hsp92I GRCGYC 2 cut(s) 511, 909
Hsp92II CATG 8 cut(s) 310, 364, 637, 717, 733, 780, 992, 1032
HspAI GCGC 1 cut(s) 511
KasI GGCGCC 1 cut(s) 510
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 4 cut(s) 63, 717, 812, 1005
LmnI GCTCC 1 cut(s) 781
Lsp1109I GCAGC 1 cut(s) 92
LweI GCATC 2 cut(s) 374, 592
MaeI CTAG 1 cut(s) 357
MaeII ACGT 3 cut(s) 183, 213, 418
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 65, 719, 814, 1007
MbiI CCGCTC 1 cut(s) 615
MboI GATC 4 cut(s) 63, 717, 812, 1005
MboII GAAGA 4 cut(s) 313, 347, 586, 1015
MfeI CAATTG 1 cut(s) 997
MflI RGATCY 2 cut(s) 812, 1005
MhlI GDGCHC 4 cut(s) 27, 90, 657, 786
MluCI AATT 2 cut(s) 142, 997
Mly113I GGCGCC 1 cut(s) 511
MlyI GAGTC 3 cut(s) 283, 392, 893
MmeI TCCRAC 2 cut(s) 75, 846
MnlI CCTC 9 cut(s) 20, 114, 266, 287, 388, 455, 523, 564, 862
MroXI GAANNNNTTC 1 cut(s) 844
MseI TTAA 1 cut(s) 627
MspA1I CMGCKG 2 cut(s) 110, 572
MspI CCGG 3 cut(s) 72, 330, 772
MspR9I CCNGG 3 cut(s) 536, 831, 837
MunI CAATTG 1 cut(s) 997
MvaI CCWGG 3 cut(s) 536, 831, 837
MvnI CGCG 2 cut(s) 92, 516
MwoI GCNNNNNNNGC 2 cut(s) 89, 362
NarI GGCGCC 1 cut(s) 511
NdeII GATC 4 cut(s) 63, 717, 812, 1005
NheI GCTAGC 1 cut(s) 356
NlaIII CATG 8 cut(s) 310, 364, 637, 717, 733, 780, 992, 1032
NlaIV GGNNCC 4 cut(s) 328, 512, 655, 814
NmeAIII GCCGAG 5 cut(s) 231, 380, 613, 831, 989
PagI TCATGA 1 cut(s) 988
PceI AGGCCT 1 cut(s) 485
PcsI WCGNNNNNNNCGW 2 cut(s) 858, 915
PdmI GAANNNNTTC 1 cut(s) 844
PfeI GAWTC 1 cut(s) 1033
PflMI CCANNNNNTGG 2 cut(s) 767, 842
PkrI GCNGC 3 cut(s) 82, 515, 571
PleI GAGTC 3 cut(s) 283, 392, 892
PluTI GGCGCC 1 cut(s) 514
PpsI GAGTC 3 cut(s) 283, 392, 892
Ppu21I YACGTR 1 cut(s) 419
Psp124BI GAGCTC 1 cut(s) 786
Psp1406I AACGTT 1 cut(s) 213
Psp6I CCWGG 3 cut(s) 534, 829, 835
PspGI CCWGG 3 cut(s) 534, 829, 835
PspN4I GGNNCC 4 cut(s) 328, 512, 655, 814
PspOMI GGGCCC 1 cut(s) 653
PsrI GAACNNNNNNTAC 2 cut(s) 683, 715
PsuI RGATCY 2 cut(s) 812, 1005
RsaI GTAC 3 cut(s) 620, 632, 968
RsaNI GTAC 3 cut(s) 619, 631, 967
SacI GAGCTC 1 cut(s) 786
SalI GTCGAC 1 cut(s) 886
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 3 cut(s) 81, 514, 570
Sau3AI GATC 4 cut(s) 63, 717, 812, 1005
SchI GAGTC 3 cut(s) 283, 392, 893
ScrFI CCNGG 3 cut(s) 536, 831, 837
SduI GDGCHC 4 cut(s) 27, 90, 657, 786
SfaNI GCATC 2 cut(s) 374, 592
SfcI CTRYAG 3 cut(s) 405, 822, 933
SfoI GGCGCC 1 cut(s) 512
SinI GGWCC 1 cut(s) 442
SmlI CTYRAG 1 cut(s) 945
SmoI CTYRAG 1 cut(s) 945
Sse9I AATT 2 cut(s) 142, 997
SseBI AGGCCT 1 cut(s) 485
SspDI GGCGCC 1 cut(s) 510
SspI AATATT 1 cut(s) 646
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 1 cut(s) 786
StuI AGGCCT 1 cut(s) 485
StyD4I CCNGG 3 cut(s) 534, 829, 835
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 5 cut(s) 384, 725, 806, 898, 919
TaiI ACGT 3 cut(s) 186, 216, 421
TaqI TCGA 3 cut(s) 260, 447, 887
TasI AATT 2 cut(s) 142, 997
TatI WGTACW 1 cut(s) 630
TauI GCSGC 2 cut(s) 516, 572
TfiI GAWTC 1 cut(s) 1033
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 1 cut(s) 303
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 255, 382, 494, 977
TspRI CASTG 1 cut(s) 303
Van91I CCANNNNNTGG 2 cut(s) 767, 842
VneI GTGCAC 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 442
XagI CCTNNNNNAGG 1 cut(s) 878
XmiI GTMKAC 3 cut(s) 186, 576, 887
XmnI GAANNNNTTC 1 cut(s) 844
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.