Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004440

Physical Location & Seq

Genomic Coordinates Reverse (-)

24134325 .. 24137677

Gene Structure 3353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1274900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3096 bp

ATGCATTTTTCACTATGGAAGCCCCTATCCTACTGCGCTGCTCTGTTCCTGGACAGGAAGAGCAGCACCAGCGGGAAGAAAAGCGGGTCGGATTCGGACTCCGACGCCAAGAGAAACCCGTCAATTCTCCGGAAGATTCAAGAAAACAAGCTCAGAGAGGCTCTGGAGGAAGCTTCGGAAGATGGGTTTCTCTTCAAATCTCAGGACATGGAGTCTGAGGCCATTGCCAACCAGGACGAGGGGATTGGACGGTCCAGATCGCTCGCCAGGCTCCATGCTCAGCGGGAGTTTCTCTGTGCCACTGCCCTTGCTGCTGACCGGATTTTTGAGTCTGAAGACGCCATCCCTGACCTCCATGAAGCATTCACGAAGTTCCTTACCATGTACTCGAATTACCAGTCTTCGGAGAAGATCGATCAGCTGAGGGTAGAGGAGTATGCACATTTGTCTCCAAAGGTATGCCTTGATTACTGCGGTTTCGGGCTTTTTTCGTACCTTCAGACACTGCACTATTGGGATTCTTCAACATTTAGCTTGTCTGAGATAACTGCAAATTTGAATAATCATGCACTTTATGGCGGTGCTGAGAAAGGCACTGTGGAACATGATATAAAAACTAGGATTATGGATTATTTAAACATTCCTGAGAGTGAATATGGTCTTGTTTTTACTGTGAGTAGAGGTTCTGCATTTAAATTGTTGGCCGAATCGTACCCTTTTCATACGAACAAGAAATTGTTGACAATGTTCGATTATGAGAGCCAGTCTGTGAATTGGATGGCTCAGAGTGCTAGAGAGAAAGGTGCAAAGGTTCACAGTGCTTGGTTTAAGTGGCCAACATTGAAACTCTGCACCACTGATTTGAGAAAGGAGATTTCGATTAAGAAGAGGAGGAAGAAGGATTCTGCGGCCGGGCTTTTTGTGTTTCCGGTACAGTCTAGGGTTACTGGGGCCAAGTATTCTTACCAGTGGATGGCACTGGCTCAGCAGAACAATTGGCATGTCTTGCTTGATGCAGGGTCGTTGGGTCCAAAGGACATGGATTCACTTGGACTGTCCCTTTTCCGGCCTGATTTTATTATCACATCGTTCTACAAGGTTTTTGGGTTTGATCCAACTGGATTTGGATGTCTTCTGATTAAGAAGTCAGTAGTCGGATGCCTTCAAAATCAGTCAGGGTCAACTGGGTCTGGAATGGTGAAGATTACCCCTGAATACCCATTATATCTTAGTGATTCGATAGATGGTCTGGATAAATTGGCCGGAACTGAGGATCATGAATTAGCTGATGATGGTGAGATAACTACTGAAACTCAGCAGGGAAAGCCGATGCCTGCTTTCTCTGGAGCATACACATCTTCTCAGGTGAGGGATGTATTTGAGACTGAGATGGAGCATGATAACAGCTCTGACAGGGATGGGACGAGCGCCTTATTTGAAGAAGCTGAGAGTGTCTCAGCTGGGGAGGTTATGAAGAGCCCAATCTTCAGTGAAGACGATTCATCTGACAATTCGTATTGGATTGATTTGGGTCAGAGCCCAATGGGTTCCGACCATTCTGGTCAGATAAACAAACATAAGATTGCCTCGCCTCTGCCTCCATTTTGGTTTTCTGGCCAGAAGAATCGTAAGCAAGTTTCCCCAAAACCTGCTTCTAGGCTGTATGGCAGCCCCATATTTGATGATAAAAAGGTAAACTCAGGGCTACACGATGACTGTCATGTGTTATCATTTGACGCCGCTGTCCTATCAATTTCTCAGGAGCTGGACTCTGTGAAGGAGGTCAATGAAGAACAATTTGCAGAAGCAGGTCCCACTTCACGAAATGATAAAAGGGCTTCTGATCAGTGTAATGGAGAGATCCAAGAAGAATGCGGAACCATTGAACCCTTGTCCAATGGGTCACTGTTGAATTCTGGCACAAATGGATTTTGTCACGAAAATTCATCTTCCACTTCTCAGCATCAGAACCTAGAAAATGGATCAACCGTTGAAAGTTGCAGAGAGATTAGAGGTTGCACCATAAGAAGAGAAACTGAAGGTGAGTTTAGGTTGTTAGGGAGAAGGGAGGGGAGTAAATTTGGAAATGGTAGGTTTTTTGGATTGGAAGAGAACGAGCAACCAAGCCGGGGGAGAAGGGTGTCCTTTAGCACTGAAAAAGACCATGTAAGCCATAATCTTGAAACAGGAGAAATTTCTGTGACTAGTCTGGAGGATGAAGATTCCGCTAGTGATGGGGAATATGGTGATGGGCAAGACTGGGACAGGAGGGAACCTGAGATAATATGTCGGCATCTTGATCATGTCAATACGTTAGGTCTCAATAAAACCACCTCCCGGCTTCGATTTTTGGTCAATTGGCTTGTGACCTCTTTGCTACAACTAAGATTGCCTGGATCAGATGGAGACAAAAGAACAAATCTTGTTCACATCTATGGCCCAAAAATAAAATACGAAAGGGGAGCAGCTGTAGCTTTCAATGTGAAAGACCGGAATAGAGGGCTAATCAATCCAGAAGTTGTACAGAAACTGGCTGAAAAAGAAGGAATCGCGCTTGGCATTGGTTTCCTCAGTCACATACGAATCATGGATAGTCCAAGACAGAAAAATGGAGTTTTGAATCTTCAAGATACTACCCTTTGCCGGCCAATGGAGAATGGCAGAAATGGTAGAAAAAGCGAGTTCGTACGGCTTGAGGTTGTTACAGCTTCTTTGGGATTCCTAACCAACTTTGAGGATGTTTACAAGTTATGGGCTTTTGTAGCAAATTTTCTTAATCCAACCTTTATCAGAGACGGTGGGCTGTCAACTGTCGATGAAGAATCTGAGACGAAATCTGTTACATCTGTCAATGATATTGTTCAAAAAGGAAAGGGTTGTTGTAGAGTTGGTCTAGCAGAATTAGATTGGAATTGTTCCCATTACTCACTCTGCTCTTGTACAATTCATGGTATAATTGACTTGTTGCAAAAGAAGATTCATGGGTTTTGCACTCTTTTTCTTTTTAGCATTGTTCTTCTGAACATGTGTGATAAGTTTCACCCTAGGGACTTGGAAATCCGGCCAACCGAGCTGGCTAATGACGGTTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

No domains found.

Protein Analysis

1032

Amino Acids

115.2

Weight (kDa)

5.46

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23520
fragaria_vesca	FvH4_1g14760
malus_domestica	MD02G1160700.v1.1 MD02G1160800.v1.1 MD15G1274900.v1.1
prunus_persica	Prupe.7G142800_v2.0.a1 Prupe.7G142900_v2.0.a1
pyrus_communis	pycom02g12670 pycom02g12680 pycom02g12690 pycom15g23800
rosa_chinensis	RchiOBHm_Chr2g0103691 RchiOBHm_Chr2g0103701
rosa_laevigata	RLG00000017249 RLG00000017250
rosa_multiflora	Rmu_sc0001852.1_g000009 Rmu_sc0001852.1_g000010
rosa_roxburghii	Rroxscaffold_2G00139470 Rroxscaffold_2G00139480 Rroxscaffold_5G00365360
rosa_rugosa	Rorug02G0116600 Rorug02G0116700
rosa_samantha	Rh2AG165300 Rh2AG165400 Rh2BG172500 Rh2BG172600 Rh2CG171400 Rh2CG171500 Rh2DG170900 Rh2DG171000
rosa_wichuraiana	Rw2G012950 Rw2G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1742
Acc36I	ACCTGC	2 cut(s)	1657, 1799
AccB7I	CCANNNNNTGG	1 cut(s)	973
AccII	CGCG	1 cut(s)	2552
AccIII	TCCGGA	1 cut(s)	129
AciI	CCGC	9 cut(s)	72, 84, 283, 474, 579, 908, 1740, 1875, 2226
AclWI	GGATC	5 cut(s)	1106, 1281, 1855, 1990, 2404
AcoI	YGGCCR	7 cut(s)	702, 833, 909, 1260, 1615, 2645, 3062
AcsI	RAATTY	6 cut(s)	553, 1912, 1942, 2078, 2193, 2767
AcuI	CTGAAG	4 cut(s)	354, 482, 1471, 2058
AcyI	GRCGYC	3 cut(s)	105, 339, 1737
AfaI	GTAC	7 cut(s)	386, 494, 713, 933, 2523, 2688, 2941
AfiI	CCNNNNNNNGG	8 cut(s)	238, 403, 973, 1065, 2129, 2337, 2643, 2650
AflIII	ACRYGT	1 cut(s)	3024
AhdI	GACNNNNNGTC	1 cut(s)	211
AhlI	ACTAGT	1 cut(s)	2204
AjnI	CCWGG	4 cut(s)	48, 231, 266, 2392
AjuI	GAANNNNNNNTTGG	2 cut(s)	1636, 1668
Alw26I	GTCTC	7 cut(s)	453, 1376, 1459, 2324, 2400, 2787, 2822
AlwI	GGATC	5 cut(s)	1106, 1281, 1855, 1990, 2404
AlwNI	CAGNNNCTG	3 cut(s)	505, 1765, 2530
Aor13HI	TCCGGA	1 cut(s)	129
ApeKI	GCWGC	5 cut(s)	38, 63, 311, 1668, 2465
ApoI	RAATTY	6 cut(s)	553, 1912, 1942, 2078, 2193, 2767
ArsI	GACNNNNNNTTYG	4 cut(s)	308, 340, 383, 415
AspA2I	CCTAGG	1 cut(s)	3044
AspLEI	GCGC	3 cut(s)	38, 1430, 2554
AspS9I	GGNCC	5 cut(s)	252, 951, 1028, 1811, 2438
AsuC2I	CCSGG	3 cut(s)	913, 2129, 2338
AsuHPI	GGTGA	6 cut(s)	1210, 1307, 1378, 2054, 2258, 3032
AvaII	GGWCC	3 cut(s)	252, 1028, 1811
AvrII	CCTAGG	1 cut(s)	3044
BalI	TGGCCA	2 cut(s)	835, 1617
BanII	GRGCYC	2 cut(s)	1481, 1541
BbsI	GAAGAC	4 cut(s)	342, 393, 1124, 1500
BbvCI	CCTCAGC	1 cut(s)	422
BbvI	GCAGC	5 cut(s)	25, 75, 298, 1680, 2477
BceAI	ACGGC	1 cut(s)	2705
BciT130I	CCWGG	4 cut(s)	50, 233, 268, 2394
BclI	TGATCA	2 cut(s)	1843, 2299
BcnI	CCSGG	3 cut(s)	913, 2129, 2338
BcoDI	GTCTC	7 cut(s)	453, 1376, 1459, 2324, 2400, 2787, 2822
BcuI	ACTAGT	1 cut(s)	2204
BfaI	CTAG	9 cut(s)	618, 792, 939, 1656, 1973, 2205, 2229, 2894, 3045
BfmI	CTRYAG	1 cut(s)	2469
BfoI	RGCGCY	1 cut(s)	1431
BfuAI	ACCTGC	2 cut(s)	1657, 1799
BisI	GCNGC	7 cut(s)	39, 64, 312, 909, 1669, 1740, 2466
BlnI	CCTAGG	1 cut(s)	3044
BlpI	GCTNAGC	2 cut(s)	279, 984
BlsI	GCNGC	7 cut(s)	40, 65, 313, 910, 1670, 1741, 2467
Bme1390I	CCNGG	7 cut(s)	50, 233, 268, 913, 2129, 2338, 2394
Bme18I	GGWCC	3 cut(s)	252, 1028, 1811
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmgT120I	GGNCC	5 cut(s)	252, 951, 1028, 1811, 2438
BmiI	GGNNCC	7 cut(s)	272, 952, 1029, 1549, 1813, 1879, 2274
BmrFI	CCNGG	7 cut(s)	50, 233, 268, 913, 2129, 2338, 2394
BmrI	ACTGGG	3 cut(s)	957, 1194, 2269
BmsI	GCATC	5 cut(s)	1003, 1148, 1320, 1972, 2302
BmuI	ACTGGG	3 cut(s)	957, 1194, 2269
BpiI	GAAGAC	4 cut(s)	342, 393, 1124, 1500
BplI	GAGNNNNNCTC	4 cut(s)	1439, 1471, 1754, 1786
BpmI	CTGGAG	3 cut(s)	185, 1365, 2231
Bpu10I	CCTNAGC	1 cut(s)	422
Bpu1102I	GCTNAGC	2 cut(s)	279, 984
BpuEI	CTTGAG	1 cut(s)	2714
BpuMI	CCSGG	3 cut(s)	913, 2129, 2338
Bsa29I	ATCGAT	1 cut(s)	414
BsaHI	GRCGYC	3 cut(s)	105, 339, 1737
BsaI	GGTCTC	1 cut(s)	2324
BsaJI	CCNNGG	2 cut(s)	2128, 3044
BsaWI	WCCGGW	4 cut(s)	129, 318, 928, 2490
BsaXI	ACNNNNNCTCC	2 cut(s)	2454, 2484
Bsc4I	CCNNNNNNNGG	8 cut(s)	238, 403, 973, 1065, 2129, 2337, 2643, 2650
Bse118I	RCCGGY	1 cut(s)	2643
Bse1I	ACTGG	9 cut(s)	397, 763, 952, 967, 984, 1123, 1189, 2264, 2535
Bse3DI	GCAATG	1 cut(s)	222
BseAI	TCCGGA	1 cut(s)	129
BseBI	CCWGG	4 cut(s)	50, 233, 268, 2394
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	2128, 3044
BseGI	GGATG	9 cut(s)	342, 783, 978, 1133, 1163, 1378, 1423, 2221, 2743
BseLI	CCNNNNNNNGG	8 cut(s)	238, 403, 973, 1065, 2129, 2337, 2643, 2650
BseMI	GCAATG	1 cut(s)	222
BseNI	ACTGG	9 cut(s)	397, 763, 952, 967, 984, 1123, 1189, 2264, 2535
BseRI	GAGGAG	2 cut(s)	446, 904
BseX3I	CGGCCG	1 cut(s)	909
BseXI	GCAGC	5 cut(s)	25, 75, 298, 1680, 2477
BseYI	CCCAGC	1 cut(s)	1460
BsgI	GTGCAG	2 cut(s)	491, 835
Bsh1236I	CGCG	1 cut(s)	2552
Bsh1285I	CGRYCG	1 cut(s)	912
BshVI	ATCGAT	1 cut(s)	414
BsiEI	CGRYCG	1 cut(s)	912
BsiWI	CGTACG	1 cut(s)	2686
BslFI	GGGAC	5 cut(s)	1042, 1435, 1797, 2276, 3062
BslI	CCNNNNNNNGG	8 cut(s)	238, 403, 973, 1065, 2129, 2337, 2643, 2650
BsmAI	GTCTC	7 cut(s)	453, 1376, 1459, 2324, 2400, 2787, 2822
BsmBI	CGTCTC	2 cut(s)	2787, 2822
BsmFI	GGGAC	5 cut(s)	1042, 1435, 1797, 2276, 3062
BsmI	GAATGC	2 cut(s)	362, 1877
Bso31I	GGTCTC	1 cut(s)	2324
Bsp1286I	GDGCHC	2 cut(s)	1481, 1541
Bsp13I	TCCGGA	1 cut(s)	129
Bsp1407I	TGTACA	2 cut(s)	2521, 2939
Bsp1720I	GCTNAGC	2 cut(s)	279, 984
BspACI	CCGC	9 cut(s)	72, 84, 283, 474, 579, 908, 1740, 1875, 2226
BspDI	ATCGAT	1 cut(s)	414
BspEI	TCCGGA	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	2552
BspHI	TCATGA	1 cut(s)	1276
BspLI	GGNNCC	7 cut(s)	272, 952, 1029, 1549, 1813, 1879, 2274
BspMI	ACCTGC	2 cut(s)	1657, 1799
BspPI	GGATC	5 cut(s)	1106, 1281, 1855, 1990, 2404
BspQI	GCTCTTC	2 cut(s)	53, 1469
BspTNI	GGTCTC	1 cut(s)	2324
BsrDI	GCAATG	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	2643
BsrGI	TGTACA	2 cut(s)	2521, 2939
BsrI	ACTGG	9 cut(s)	397, 763, 952, 967, 984, 1123, 1189, 2264, 2535
BssAI	RCCGGY	1 cut(s)	2643
BssECI	CCNNGG	2 cut(s)	2128, 3044
BssNI	GRCGYC	3 cut(s)	105, 339, 1737
BssT1I	CCWWGG	1 cut(s)	3044
Bst2UI	CCWGG	4 cut(s)	50, 233, 268, 2394
Bst6I	CTCTTC	6 cut(s)	53, 197, 881, 1469, 2023, 2103
BstACI	GRCGYC	3 cut(s)	105, 339, 1737
BstAPI	GCANNNNNTGC	1 cut(s)	1006
BstAUI	TGTACA	2 cut(s)	2521, 2939
BstC8I	GCNNGC	4 cut(s)	264, 1335, 2645, 3075
BstF5I	GGATG	9 cut(s)	342, 783, 978, 1133, 1163, 1378, 1423, 2221, 2743
BstFNI	CGCG	1 cut(s)	2552
BstH2I	RGCGCY	1 cut(s)	1431
BstHHI	GCGC	3 cut(s)	38, 1430, 2554
BstMAI	GTCTC	7 cut(s)	453, 1376, 1459, 2324, 2400, 2787, 2822
BstMCI	CGRYCG	1 cut(s)	912
BstMWI	GCNNNNNNNGC	9 cut(s)	69, 268, 311, 788, 1006, 1324, 2471, 2762, 3070
BstNI	CCWGG	4 cut(s)	50, 233, 268, 2394
BstNSI	RCATGY	2 cut(s)	1004, 3028
BstSCI	CCNGG	7 cut(s)	48, 231, 266, 911, 2127, 2336, 2392
BstSFI	CTRYAG	1 cut(s)	2469
BstUI	CGCG	1 cut(s)	2552
BstV1I	GCAGC	5 cut(s)	25, 75, 298, 1680, 2477
BstV2I	GAAGAC	4 cut(s)	342, 393, 1124, 1500
BstX2I	RGATCY	1 cut(s)	1860
BstYI	RGATCY	1 cut(s)	1860
BstZI	CGGCCG	1 cut(s)	909
Bsu15I	ATCGAT	1 cut(s)	414
BsuTUI	ATCGAT	1 cut(s)	414
BtsCI	GGATG	9 cut(s)	342, 783, 978, 1133, 1163, 1378, 1423, 2221, 2743
BtsI	GCAGTG	2 cut(s)	300, 503
BveI	ACCTGC	2 cut(s)	1657, 1799
Cac8I	GCNNGC	4 cut(s)	264, 1335, 2645, 3075
CaiI	CAGNNNCTG	3 cut(s)	505, 1765, 2530
CciI	TCATGA	1 cut(s)	1276
CfoI	GCGC	3 cut(s)	38, 1430, 2554
Cfr10I	RCCGGY	1 cut(s)	2643
Cfr13I	GGNCC	5 cut(s)	252, 951, 1028, 1811, 2438
ClaI	ATCGAT	1 cut(s)	414
CseI	GACGC	3 cut(s)	113, 347, 1745
Csp6I	GTAC	7 cut(s)	385, 493, 712, 932, 2522, 2687, 2940
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviQI	GTAC	7 cut(s)	385, 493, 712, 932, 2522, 2687, 2940
DraI	TTTAAA	2 cut(s)	636, 694
DrdI	GACNNNNNNGTC	1 cut(s)	1742
DriI	GACNNNNNGTC	1 cut(s)	211
DseDI	GACNNNNNNGTC	1 cut(s)	1742
EaeI	YGGCCR	7 cut(s)	702, 833, 909, 1260, 1615, 2645, 3062
EagI	CGGCCG	1 cut(s)	909
Eam1104I	CTCTTC	6 cut(s)	53, 197, 881, 1469, 2023, 2103
Eam1105I	GACNNNNNGTC	1 cut(s)	211
EarI	CTCTTC	6 cut(s)	53, 197, 881, 1469, 2023, 2103
EclXI	CGGCCG	1 cut(s)	909
Eco130I	CCWWGG	1 cut(s)	3044
Eco24I	GRGCYC	2 cut(s)	1481, 1541
Eco31I	GGTCTC	1 cut(s)	2324
Eco47I	GGWCC	3 cut(s)	252, 1028, 1811
Eco52I	CGGCCG	1 cut(s)	909
Eco57I	CTGAAG	4 cut(s)	354, 482, 1471, 2058
EcoO109I	RGGNCCY	1 cut(s)	1811
EcoRI	GAATTC	1 cut(s)	1912
EcoRII	CCWGG	4 cut(s)	48, 231, 266, 2392
EcoT14I	CCWWGG	1 cut(s)	3044
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	1481, 1541
ErhI	CCWWGG	1 cut(s)	3044
Esp3I	CGTCTC	2 cut(s)	2787, 2822
FaqI	GGGAC	5 cut(s)	1042, 1435, 1797, 2276, 3062
FauI	CCCGC	3 cut(s)	65, 77, 276
FbaI	TGATCA	2 cut(s)	1843, 2299
Fnu4HI	GCNGC	7 cut(s)	39, 64, 312, 909, 1669, 1740, 2466
FokI	GGATG	9 cut(s)	329, 790, 985, 1140, 1170, 1385, 1430, 2228, 2750
FriOI	GRGCYC	2 cut(s)	1481, 1541
Fsp4HI	GCNGC	7 cut(s)	39, 64, 312, 909, 1669, 1740, 2466
FspBI	CTAG	9 cut(s)	618, 792, 939, 1656, 1973, 2205, 2229, 2894, 3045
GlaI	GCGC	3 cut(s)	37, 1429, 2553
GluI	GCNGC	7 cut(s)	39, 64, 312, 909, 1669, 1740, 2466
GsaI	CCCAGC	1 cut(s)	1464
GsuI	CTGGAG	3 cut(s)	185, 1365, 2231
HaeII	RGCGCY	1 cut(s)	1431
HgaI	GACGC	3 cut(s)	113, 347, 1745
HhaI	GCGC	3 cut(s)	38, 1430, 2554
Hin1I	GRCGYC	3 cut(s)	105, 339, 1737
Hin6I	GCGC	3 cut(s)	36, 1428, 2552
HinP1I	GCGC	3 cut(s)	36, 1428, 2552
HincII	GTYRAC	3 cut(s)	741, 1182, 2808
HindII	GTYRAC	3 cut(s)	741, 1182, 2808
HindIII	AAGCTT	1 cut(s)	171
HphI	GGTGA	6 cut(s)	1210, 1307, 1378, 2054, 2258, 3032
Hpy166II	GTNNAC	7 cut(s)	741, 814, 1182, 1696, 2428, 2743, 2808
Hpy8I	GTNNAC	7 cut(s)	741, 814, 1182, 1696, 2428, 2743, 2808
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	8 cut(s)	506, 892, 1172, 1771, 2033, 2058, 2130, 2537
HpyCH4IV	ACGT	1 cut(s)	2312
HpyF10VI	GCNNNNNNNGC	9 cut(s)	69, 268, 311, 788, 1006, 1324, 2471, 2762, 3070
HpySE526I	ACGT	1 cut(s)	2312
Hsp92I	GRCGYC	3 cut(s)	105, 339, 1737
HspAI	GCGC	3 cut(s)	36, 1428, 2552
Kpn2I	TCCGGA	1 cut(s)	129
KroI	GCCGGC	1 cut(s)	2643
KroNI	GCCGGC	1 cut(s)	2645
Ksp22I	TGATCA	2 cut(s)	1843, 2299
LguI	GCTCTTC	2 cut(s)	53, 1469
LmnI	GCTCC	5 cut(s)	276, 1346, 1393, 1762, 2462
Lsp1109I	GCAGC	5 cut(s)	25, 75, 298, 1680, 2477
LweI	GCATC	5 cut(s)	1003, 1148, 1320, 1972, 2302
MaeI	CTAG	9 cut(s)	618, 792, 939, 1656, 1973, 2205, 2229, 2894, 3045
MaeII	ACGT	1 cut(s)	2312
MaeIII	GTNAC	8 cut(s)	943, 1902, 1934, 2200, 2365, 2573, 2701, 2839
MfeI	CAATTG	2 cut(s)	994, 2356
MflI	RGATCY	1 cut(s)	1860
MhlI	GDGCHC	2 cut(s)	1481, 1541
MlsI	TGGCCA	2 cut(s)	835, 1617
MluNI	TGGCCA	2 cut(s)	835, 1617
MlyI	GAGTC	4 cut(s)	92, 221, 338, 1763
MmeI	TCCRAC	6 cut(s)	69, 126, 1135, 1139, 1575, 2804
Mox20I	TGGCCA	2 cut(s)	835, 1617
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	129
MroNI	GCCGGC	1 cut(s)	2643
MscI	TGGCCA	2 cut(s)	835, 1617
MseI	TTAA	6 cut(s)	635, 693, 828, 882, 1140, 2775
MslI	CAYNNNNRTG	1 cut(s)	2433
Msp20I	TGGCCA	2 cut(s)	835, 1617
MspA1I	CMGCKG	6 cut(s)	72, 283, 421, 1460, 1742, 2468
MspR9I	CCNGG	7 cut(s)	50, 233, 268, 913, 2129, 2338, 2394
MunI	CAATTG	2 cut(s)	994, 2356
Mva1269I	GAATGC	2 cut(s)	362, 1877
MvaI	CCWGG	4 cut(s)	50, 233, 268, 2394
MvnI	CGCG	1 cut(s)	2552
MwoI	GCNNNNNNNGC	9 cut(s)	69, 268, 311, 788, 1006, 1324, 2471, 2762, 3070
NaeI	GCCGGC	1 cut(s)	2645
NciI	CCSGG	3 cut(s)	913, 2129, 2338
NgoMIV	GCCGGC	1 cut(s)	2643
NlaIV	GGNNCC	7 cut(s)	272, 952, 1029, 1549, 1813, 1879, 2274
NmuCI	GTSAC	5 cut(s)	1902, 1934, 2200, 2365, 2573
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	1004, 3028
PagI	TCATGA	1 cut(s)	1276
PciI	ACATGT	1 cut(s)	3024
PciSI	GCTCTTC	2 cut(s)	53, 1469
PctI	GAATGC	2 cut(s)	362, 1877
PdiI	GCCGGC	1 cut(s)	2645
Pfl23II	CGTACG	1 cut(s)	2686
PflMI	CCANNNNNTGG	1 cut(s)	973
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	7 cut(s)	40, 65, 313, 910, 1670, 1741, 2467
PleI	GAGTC	4 cut(s)	92, 220, 337, 1763
PpsI	GAGTC	4 cut(s)	92, 220, 337, 1763
PpuMI	RGGWCCY	1 cut(s)	1811
PscI	ACATGT	1 cut(s)	3024
Psp5II	RGGWCCY	1 cut(s)	1811
Psp6I	CCWGG	4 cut(s)	48, 231, 266, 2392
PspFI	CCCAGC	1 cut(s)	1460
PspGI	CCWGG	4 cut(s)	48, 231, 266, 2392
PspLI	CGTACG	1 cut(s)	2686
PspN4I	GGNNCC	7 cut(s)	272, 952, 1029, 1549, 1813, 1879, 2274
PspPI	GGNCC	5 cut(s)	252, 951, 1028, 1811, 2438
PspPPI	RGGWCCY	1 cut(s)	1811
PstNI	CAGNNNCTG	3 cut(s)	505, 1765, 2530
PsuI	RGATCY	1 cut(s)	1860
PvuII	CAGCTG	3 cut(s)	421, 1460, 2468
RsaI	GTAC	7 cut(s)	386, 494, 713, 933, 2523, 2688, 2941
RsaNI	GTAC	7 cut(s)	385, 493, 712, 932, 2522, 2687, 2940
RseI	CAYNNNNRTG	1 cut(s)	2433
SapI	GCTCTTC	2 cut(s)	53, 1469
SaqAI	TTAA	6 cut(s)	635, 693, 828, 882, 1140, 2775
SatI	GCNGC	7 cut(s)	39, 64, 312, 909, 1669, 1740, 2466
Sau96I	GGNCC	5 cut(s)	252, 951, 1028, 1811, 2438
SchI	GAGTC	4 cut(s)	92, 221, 338, 1763
ScrFI	CCNGG	7 cut(s)	50, 233, 268, 913, 2129, 2338, 2394
SduI	GDGCHC	2 cut(s)	1481, 1541
SfaNI	GCATC	5 cut(s)	1003, 1148, 1320, 1972, 2302
SfcI	CTRYAG	1 cut(s)	2469
SinI	GGWCC	3 cut(s)	252, 1028, 1811
SmiI	ATTTAAAT	1 cut(s)	694
SmiMI	CAYNNNNRTG	1 cut(s)	2433
SmlI	CTYRAG	1 cut(s)	2693
SmoI	CTYRAG	1 cut(s)	2693
SpeI	ACTAGT	1 cut(s)	2204
SsiI	CCGC	9 cut(s)	72, 84, 283, 474, 579, 908, 1740, 1875, 2226
SspMI	CTAG	9 cut(s)	618, 792, 939, 1656, 1973, 2205, 2229, 2894, 3045
StyD4I	CCNGG	7 cut(s)	48, 231, 266, 911, 2127, 2336, 2392
StyI	CCWWGG	1 cut(s)	3044
SwaI	ATTTAAAT	1 cut(s)	694
TaiI	ACGT	1 cut(s)	2315
TaqI	TCGA	7 cut(s)	389, 414, 750, 878, 1238, 2344, 2814
TatI	WGTACW	3 cut(s)	384, 2521, 2939
TauI	GCSGC	2 cut(s)	911, 1742
Tru1I	TTAA	6 cut(s)	635, 693, 828, 882, 1140, 2775
Tru9I	TTAA	6 cut(s)	635, 693, 828, 882, 1140, 2775
TseFI	GTSAC	5 cut(s)	1902, 1934, 2200, 2365, 2573
TseI	GCWGC	5 cut(s)	38, 63, 311, 1668, 2465
Tsp45I	GTSAC	5 cut(s)	1902, 1934, 2200, 2365, 2573
Van91I	CCANNNNNTGG	1 cut(s)	973
VpaK11BI	GGWCC	3 cut(s)	252, 1028, 1811
XapI	RAATTY	6 cut(s)	553, 1912, 1942, 2078, 2193, 2767
XceI	RCATGY	2 cut(s)	1004, 3028
XmaJI	CCTAGG	1 cut(s)	3044
XspI	CTAG	9 cut(s)	618, 792, 939, 1656, 1973, 2205, 2229, 2894, 3045
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.