Rroxscaffold_5G00365360
ERF Family

superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004440
Physical Location & Seq
Forward (+)
46907204 .. 46907880
677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00365360.1

Sequence Viewer

Length: 606 bp
ATGTATTTGAGTGATTCTGTAGATGGTCTGGATAAGTTGGCTGGAACTGAAGACGATGAAGTAGTTAGGGATGCTGAAAAAAGTTATGATGCTGAAAAAAGTGGTTCTGGTCATAATAGAGAGATCCAGGAAGAATGTGGCAGCAGCAATTCATTGCCTAATGGGACGGTGCTGAACTCTACAACAAATGGTTTTTATCACATTGTTTCAACTCCTACTTCCCGACATCACAGACTAGAGAGAGTGCCATCAGAAGAGAAACTGAAGAATGAGTCATCAAACAGGGGGACCAGGGTATCCTTTAGCATAAAAGATAACCATAAAGATCATGCAAGCCAAAATTTTGATACTGGAGAAATATCTATGACTAGTCTGGAAGATGAAGACTACACTAGTGATGGGGAATATGCTAATGGACAAGACTGCGACAGGACTAAGATAATTTGCCGGCATATTGATCATGTTAATATGTTGGGCCTCAACAAGACCACCTCTCGACTACGATTTCTGATCAATTGGCTTGTGACCTTGTTGCTGCAATTAAGATTGTCTGGTTCTGATAGAGACAACAGAAGGACGCTAGCAGTGGCGGACTCTGGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.53

Weight (kDa)

5.24

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 590
AclWI GGATC 1 cut(s) 118
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 2 cut(s) 69, 284
AgsI TTSAA 1 cut(s) 210
AhlI ACTAGT 2 cut(s) 368, 392
AjnI CCWGG 2 cut(s) 126, 290
Alw26I GTCTC 1 cut(s) 558
AlwI GGATC 1 cut(s) 118
AoxI GGCC 1 cut(s) 475
ApeKI GCWGC 3 cut(s) 141, 144, 535
ApoI RAATTY 1 cut(s) 340
AspS9I GGNCC 2 cut(s) 288, 475
AsuNHI GCTAGC 1 cut(s) 580
AvaII GGWCC 1 cut(s) 288
BaeI ACNNNNGTAYC 2 cut(s) 279, 312
BbsI GAAGAC 2 cut(s) 57, 390
BbvI GCAGC 3 cut(s) 153, 156, 522
BccI CCATC 3 cut(s) 17, 256, 392
BciT130I CCWGG 2 cut(s) 128, 292
BciVI GTATCC 1 cut(s) 307
BclI TGATCA 2 cut(s) 457, 510
BcoDI GTCTC 1 cut(s) 558
BcuI ACTAGT 2 cut(s) 368, 392
BfaI CTAG 4 cut(s) 236, 369, 393, 581
BfmI CTRYAG 1 cut(s) 18
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 3 cut(s) 142, 145, 536
BlsI GCNGC 3 cut(s) 143, 146, 537
Bme1390I CCNGG 2 cut(s) 128, 292
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 2 cut(s) 288, 475
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 2 cut(s) 128, 292
BmsI GCATC 2 cut(s) 61, 79
BmtI GCTAGC 1 cut(s) 584
BpiI GAAGAC 2 cut(s) 57, 390
BpmI CTGGAG 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 291
Bse118I RCCGGY 1 cut(s) 447
Bse1I ACTGG 1 cut(s) 355
Bse3DI GCAATG 1 cut(s) 152
BseBI CCWGG 2 cut(s) 128, 292
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 76
BseMI GCAATG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 355
BseXI GCAGC 3 cut(s) 153, 156, 522
BshFI GGCC 1 cut(s) 477
BsiSI CCGG 1 cut(s) 448
BslFI GGGAC 2 cut(s) 178, 301
BsmAI GTCTC 1 cut(s) 558
BsmFI GGGAC 2 cut(s) 178, 301
BsnI GGCC 1 cut(s) 477
Bsp143I GATC 4 cut(s) 123, 325, 457, 510
BspACI CCGC 1 cut(s) 590
BspANI GGCC 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 289
BspOI GCTAGC 1 cut(s) 584
BspPI GGATC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 152
BsrFI RCCGGY 1 cut(s) 447
BsrI ACTGG 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 447
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 4 cut(s) 123, 325, 457, 510
Bst2UI CCWGG 2 cut(s) 128, 292
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 249
BstC8I GCNNGC 3 cut(s) 334, 449, 582
BstDEI CTNAG 1 cut(s) 435
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 4 cut(s) 126, 328, 460, 513
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 4 cut(s) 123, 325, 457, 510
BstNI CCWGG 2 cut(s) 128, 292
BstSCI CCNGG 2 cut(s) 126, 290
BstSFI CTRYAG 1 cut(s) 18
BstV1I GCAGC 3 cut(s) 153, 156, 522
BstV2I GAAGAC 2 cut(s) 57, 390
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 1 cut(s) 477
BtsCI GGATG 1 cut(s) 76
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 1 cut(s) 591
Cac8I GCNNGC 3 cut(s) 334, 449, 582
Cfr10I RCCGGY 1 cut(s) 447
Cfr13I GGNCC 2 cut(s) 288, 475
CseI GACGC 1 cut(s) 586
CviAII CATG 2 cut(s) 329, 461
CviJI RGCY 4 cut(s) 41, 336, 477, 520
CviKI_1 RGCY 4 cut(s) 41, 336, 477, 520
DdeI CTNAG 1 cut(s) 435
DpnI GATC 4 cut(s) 125, 327, 459, 512
DpnII GATC 4 cut(s) 123, 325, 457, 510
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
EciI GGCGGA 1 cut(s) 605
Eco47I GGWCC 1 cut(s) 288
Eco57I CTGAAG 2 cut(s) 69, 284
EcoRII CCWGG 2 cut(s) 126, 290
FaeI CATG 2 cut(s) 332, 464
FaqI GGGAC 2 cut(s) 178, 301
FatI CATG 2 cut(s) 328, 460
FbaI TGATCA 2 cut(s) 457, 510
Fnu4HI GCNGC 3 cut(s) 142, 145, 536
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 3 cut(s) 142, 145, 536
FspBI CTAG 4 cut(s) 236, 369, 393, 581
GluI GCNGC 3 cut(s) 142, 145, 536
GsuI CTGGAG 1 cut(s) 372
HaeIII GGCC 1 cut(s) 477
HapII CCGG 1 cut(s) 448
HgaI GACGC 1 cut(s) 586
Hin1II CATG 2 cut(s) 332, 464
HinfI GANTC 3 cut(s) 14, 272, 593
HpaII CCGG 1 cut(s) 448
Hpy188I TCNGA 3 cut(s) 253, 510, 559
Hpy188III TCNNGA 5 cut(s) 29, 222, 374, 495, 597
HpyAV CCTTC 1 cut(s) 567
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 2 cut(s) 332, 538
HpyF3I CTNAG 1 cut(s) 435
Hsp92II CATG 2 cut(s) 332, 464
KroI GCCGGC 1 cut(s) 447
KroNI GCCGGC 1 cut(s) 449
Ksp22I TGATCA 2 cut(s) 457, 510
Kzo9I GATC 4 cut(s) 123, 325, 457, 510
Lsp1109I GCAGC 3 cut(s) 153, 156, 522
LweI GCATC 2 cut(s) 61, 79
MaeI CTAG 4 cut(s) 236, 369, 393, 581
MaeIII GTNAC 1 cut(s) 523
MalI GATC 4 cut(s) 125, 327, 459, 512
MboI GATC 4 cut(s) 123, 325, 457, 510
MboII GAAGA 6 cut(s) 62, 143, 266, 277, 389, 395
MfeI CAATTG 1 cut(s) 514
MflI RGATCY 1 cut(s) 123
MluCI AATT 5 cut(s) 148, 340, 441, 514, 539
MlyI GAGTC 2 cut(s) 281, 587
MnlI CCTC 2 cut(s) 488, 502
MroNI GCCGGC 1 cut(s) 447
MseI TTAA 3 cut(s) 465, 542, 604
MspI CCGG 1 cut(s) 448
MspR9I CCNGG 2 cut(s) 128, 292
MunI CAATTG 1 cut(s) 514
MvaI CCWGG 2 cut(s) 128, 292
NaeI GCCGGC 1 cut(s) 449
NdeII GATC 4 cut(s) 123, 325, 457, 510
NgoMIV GCCGGC 1 cut(s) 447
NheI GCTAGC 1 cut(s) 580
NlaIII CATG 2 cut(s) 332, 464
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 523
PdiI GCCGGC 1 cut(s) 449
PfeI GAWTC 1 cut(s) 14
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 3 cut(s) 143, 146, 537
PleI GAGTC 2 cut(s) 280, 587
PpsI GAGTC 2 cut(s) 280, 587
Psp6I CCWGG 2 cut(s) 126, 290
PspGI CCWGG 2 cut(s) 126, 290
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 2 cut(s) 288, 475
PsuI RGATCY 1 cut(s) 123
SaqAI TTAA 3 cut(s) 465, 542, 604
SatI GCNGC 3 cut(s) 142, 145, 536
Sau3AI GATC 4 cut(s) 123, 325, 457, 510
Sau96I GGNCC 2 cut(s) 288, 475
SchI GAGTC 2 cut(s) 281, 587
ScrFI CCNGG 2 cut(s) 128, 292
SetI ASST 2 cut(s) 494, 530
SfaNI GCATC 2 cut(s) 61, 79
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 288
SpeI ACTAGT 2 cut(s) 368, 392
Sse9I AATT 5 cut(s) 148, 340, 441, 514, 539
SsiI CCGC 1 cut(s) 590
SspMI CTAG 4 cut(s) 236, 369, 393, 581
StyD4I CCNGG 2 cut(s) 126, 290
TaaI ACNGT 1 cut(s) 169
TaqI TCGA 1 cut(s) 496
TasI AATT 5 cut(s) 148, 340, 441, 514, 539
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 3 cut(s) 465, 542, 604
Tru9I TTAA 3 cut(s) 465, 542, 604
TscAI CASTG 1 cut(s) 591
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 3 cut(s) 141, 144, 535
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 3 cut(s) 72, 141, 396
TspRI CASTG 1 cut(s) 591
VpaK11BI GGWCC 1 cut(s) 288
XapI RAATTY 1 cut(s) 340
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XspI CTAG 4 cut(s) 236, 369, 393, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.