superfamily protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G23520 |
| fragaria_vesca | FvH4_1g14760 |
| malus_domestica | MD02G1160700.v1.1 MD02G1160800.v1.1 MD15G1274900.v1.1 |
| prunus_persica | Prupe.7G142800_v2.0.a1 Prupe.7G142900_v2.0.a1 |
| pyrus_communis | pycom02g12670 pycom02g12680 pycom02g12690 pycom15g23800 |
| rosa_chinensis | RchiOBHm_Chr2g0103691 RchiOBHm_Chr2g0103701 |
| rosa_laevigata | RLG00000017249 RLG00000017250 |
| rosa_multiflora | Rmu_sc0001852.1_g000009 Rmu_sc0001852.1_g000010 |
| rosa_roxburghii | Rroxscaffold_2G00139470 Rroxscaffold_2G00139480 Rroxscaffold_5G00365360 |
| rosa_rugosa | Rorug02G0116600 Rorug02G0116700 |
| rosa_samantha | Rh2AG165300 Rh2AG165400 Rh2BG172500 Rh2BG172600 Rh2CG171400 Rh2CG171500 Rh2DG170900 Rh2DG171000 |
| rosa_wichuraiana | Rw2G012950 Rw2G012960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 184, 745 |
| AccI | GTMKAC | 3 cut(s) | 953, 1122, 2534 |
| AciI | CCGC | 5 cut(s) | 1370, 1512, 1709, 1838, 2526 |
| AclWI | GGATC | 3 cut(s) | 878, 1173, 1327 |
| AcoI | YGGCCR | 1 cut(s) | 605 |
| AcsI | RAATTY | 4 cut(s) | 371, 1017, 1654, 2494 |
| AcuI | CTGAAG | 5 cut(s) | 135, 1581, 1776, 2262, 2283 |
| AfaI | GTAC | 3 cut(s) | 365, 416, 485 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 184, 745, 837, 1847 |
| AflIII | ACRYGT | 1 cut(s) | 1125 |
| AgsI | TTSAA | 8 cut(s) | 90, 99, 616, 938, 1154, 1211, 2206, 2354 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 187 |
| AhlI | ACTAGT | 1 cut(s) | 1931 |
| AjiI | CACGTC | 1 cut(s) | 1128 |
| AjnI | CCWGG | 5 cut(s) | 177, 210, 245, 593, 2119 |
| Alw26I | GTCTC | 7 cut(s) | 168, 188, 1904, 1983, 2127, 2320, 2549 |
| AlwI | GGATC | 3 cut(s) | 878, 1173, 1327 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1537, 2003, 2257 |
| AoxI | GGCC | 7 cut(s) | 605, 723, 839, 1475, 2044, 2164, 2227 |
| ApeKI | GCWGC | 7 cut(s) | 38, 63, 290, 1440, 1716, 2104, 2192 |
| ApoI | RAATTY | 4 cut(s) | 371, 1017, 1654, 2494 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 362, 394 |
| AseI | ATTAAT | 2 cut(s) | 2082, 2235 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1612, 2247 |
| AspLEI | GCGC | 2 cut(s) | 1739, 2073 |
| AspS9I | GGNCC | 7 cut(s) | 231, 723, 800, 1475, 1555, 2044, 2165 |
| AsuC2I | CCSGG | 1 cut(s) | 1079 |
| AsuHPI | GGTGA | 6 cut(s) | 847, 982, 1150, 1252, 1466, 1772 |
| AsuII | TTCGAA | 3 cut(s) | 106, 650, 1097 |
| AvaII | GGWCC | 3 cut(s) | 231, 800, 1555 |
| BanII | GRGCYC | 1 cut(s) | 1313 |
| BbsI | GAAGAC | 1 cut(s) | 1272 |
| BbvCI | CCTCAGC | 1 cut(s) | 401 |
| BbvI | GCAGC | 7 cut(s) | 25, 75, 302, 1452, 1703, 2091, 2204 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 377, 411 |
| BciT130I | CCWGG | 5 cut(s) | 179, 212, 247, 595, 2121 |
| BclI | TGATCA | 3 cut(s) | 202, 1132, 2026 |
| BcnI | CCSGG | 1 cut(s) | 1079 |
| BcoDI | GTCTC | 7 cut(s) | 168, 188, 1904, 1983, 2127, 2320, 2549 |
| BcuI | ACTAGT | 1 cut(s) | 1931 |
| BfaI | CTAG | 4 cut(s) | 711, 1197, 1685, 1932 |
| BisI | GCNGC | 9 cut(s) | 39, 64, 291, 1370, 1441, 1512, 1717, 2105, 2193 |
| BlpI | GCTNAGC | 1 cut(s) | 294 |
| BlsI | GCNGC | 9 cut(s) | 40, 65, 292, 1371, 1442, 1513, 1718, 2106, 2194 |
| BmcAI | AGTACT | 1 cut(s) | 416 |
| Bme1390I | CCNGG | 6 cut(s) | 179, 212, 247, 595, 1079, 2121 |
| Bme18I | GGWCC | 3 cut(s) | 231, 800, 1555 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 187 |
| BmgBI | CACGTC | 1 cut(s) | 1128 |
| BmgT120I | GGNCC | 7 cut(s) | 231, 723, 800, 1475, 1555, 2044, 2165 |
| BmiI | GGNNCC | 6 cut(s) | 430, 724, 801, 802, 1557, 1615 |
| BmrFI | CCNGG | 6 cut(s) | 179, 212, 247, 595, 1079, 2121 |
| BmrI | ACTGGG | 1 cut(s) | 966 |
| BmsI | GCATC | 9 cut(s) | 775, 890, 1180, 1367, 1498, 1559, 1684, 2029, 2283 |
| BmuI | ACTGGG | 1 cut(s) | 966 |
| BoxI | GACNNNNGTC | 1 cut(s) | 213 |
| BpiI | GAAGAC | 1 cut(s) | 1272 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1454, 1486 |
| BpmI | CTGGAG | 3 cut(s) | 1032, 1137, 1958 |
| Bpu10I | CCTNAGC | 2 cut(s) | 128, 401 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 294 |
| Bpu14I | TTCGAA | 3 cut(s) | 106, 650, 1097 |
| BpuEI | CTTGAG | 2 cut(s) | 161, 1928 |
| BpuMI | CCSGG | 1 cut(s) | 1079 |
| BsaI | GGTCTC | 1 cut(s) | 168 |
| BsaJI | CCNNGG | 4 cut(s) | 177, 211, 804, 1077 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 184, 745, 837, 1847 |
| Bse118I | RCCGGY | 1 cut(s) | 2016 |
| Bse1I | ACTGG | 7 cut(s) | 739, 756, 895, 961, 1253, 1542, 2154 |
| Bse3DI | GCAATG | 2 cut(s) | 437, 2099 |
| BseBI | CCWGG | 5 cut(s) | 179, 212, 247, 595, 2121 |
| BseDI | CCNNGG | 4 cut(s) | 177, 211, 804, 1077 |
| BseGI | GGATG | 8 cut(s) | 321, 555, 750, 905, 1051, 1150, 1948, 2507 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 184, 745, 837, 1847 |
| BseMI | GCAATG | 2 cut(s) | 437, 2099 |
| BseNI | ACTGG | 7 cut(s) | 739, 756, 895, 961, 1253, 1542, 2154 |
| BseRI | GAGGAG | 3 cut(s) | 329, 1261, 2001 |
| BseXI | GCAGC | 7 cut(s) | 25, 75, 302, 1452, 1703, 2091, 2204 |
| BseYI | CCCAGC | 1 cut(s) | 788 |
| BsgI | GTGCAG | 5 cut(s) | 340, 605, 1702, 2211, 2389 |
| BshFI | GGCC | 7 cut(s) | 607, 725, 841, 1477, 2046, 2166, 2229 |
| BsiSI | CCGG | 2 cut(s) | 1079, 2017 |
| BslFI | GGGAC | 4 cut(s) | 786, 1541, 2353, 2567 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 184, 745, 837, 1847 |
| BsmAI | GTCTC | 7 cut(s) | 168, 188, 1904, 1983, 2127, 2320, 2549 |
| BsmBI | CGTCTC | 2 cut(s) | 1904, 2549 |
| BsmFI | GGGAC | 4 cut(s) | 786, 1541, 2353, 2567 |
| BsnI | GGCC | 7 cut(s) | 607, 725, 841, 1477, 2046, 2166, 2229 |
| Bso31I | GGTCTC | 1 cut(s) | 168 |
| Bsp119I | TTCGAA | 3 cut(s) | 106, 650, 1097 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1313 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 294 |
| BspACI | CCGC | 5 cut(s) | 1370, 1512, 1709, 1838, 2526 |
| BspANI | GGCC | 7 cut(s) | 607, 725, 841, 1477, 2046, 2166, 2229 |
| BspHI | TCATGA | 1 cut(s) | 115 |
| BspLI | GGNNCC | 6 cut(s) | 430, 724, 801, 802, 1557, 1615 |
| BspPI | GGATC | 3 cut(s) | 878, 1173, 1327 |
| BspQI | GCTCTTC | 1 cut(s) | 53 |
| BspT104I | TTCGAA | 3 cut(s) | 106, 650, 1097 |
| BspTNI | GGTCTC | 1 cut(s) | 168 |
| BsrDI | GCAATG | 2 cut(s) | 437, 2099 |
| BsrFI | RCCGGY | 1 cut(s) | 2016 |
| BsrI | ACTGG | 7 cut(s) | 739, 756, 895, 961, 1253, 1542, 2154 |
| BssAI | RCCGGY | 1 cut(s) | 2016 |
| BssECI | CCNNGG | 4 cut(s) | 177, 211, 804, 1077 |
| BssNAI | GTATAC | 1 cut(s) | 1123 |
| BssT1I | CCWWGG | 1 cut(s) | 804 |
| Bst1107I | GTATAC | 1 cut(s) | 1123 |
| Bst2UI | CCWGG | 5 cut(s) | 179, 212, 247, 595, 2121 |
| Bst4CI | ACNGT | 6 cut(s) | 35, 231, 1883, 1894, 2115, 2539 |
| Bst6I | CTCTTC | 4 cut(s) | 53, 662, 1557, 1821 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 778 |
| BstBI | TTCGAA | 3 cut(s) | 106, 650, 1097 |
| BstC8I | GCNNGC | 5 cut(s) | 243, 1107, 2018, 2259, 2528 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 835 |
| BstF5I | GGATG | 8 cut(s) | 321, 555, 750, 905, 1051, 1150, 1948, 2507 |
| BstHHI | GCGC | 2 cut(s) | 1739, 2073 |
| BstMAI | GTCTC | 7 cut(s) | 168, 188, 1904, 1983, 2127, 2320, 2549 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 247, 290, 560, 778, 2198, 2489 |
| BstNI | CCWGG | 5 cut(s) | 179, 212, 247, 595, 2121 |
| BstNSI | RCATGY | 1 cut(s) | 776 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 213 |
| BstSCI | CCNGG | 6 cut(s) | 177, 210, 245, 593, 1077, 2119 |
| BstV1I | GCAGC | 7 cut(s) | 25, 75, 302, 1452, 1703, 2091, 2204 |
| BstV2I | GAAGAC | 1 cut(s) | 1272 |
| BstX2I | RGATCY | 1 cut(s) | 1319 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 218, 811 |
| BstYI | RGATCY | 1 cut(s) | 1319 |
| BstZ17I | GTATAC | 1 cut(s) | 1123 |
| BsuRI | GGCC | 7 cut(s) | 607, 725, 841, 1477, 2046, 2166, 2229 |
| BtrI | CACGTC | 1 cut(s) | 1128 |
| BtsCI | GGATG | 8 cut(s) | 321, 555, 750, 905, 1051, 1150, 1948, 2507 |
| BtsI | GCAGTG | 3 cut(s) | 279, 1963, 2202 |
| BtsIMutI | CAGTG | 8 cut(s) | 31, 279, 746, 749, 1267, 1963, 2147, 2202 |
| Cac8I | GCNNGC | 5 cut(s) | 243, 1107, 2018, 2259, 2528 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1537, 2003, 2257 |
| CciI | TCATGA | 1 cut(s) | 115 |
| CfoI | GCGC | 2 cut(s) | 1739, 2073 |
| Cfr10I | RCCGGY | 1 cut(s) | 2016 |
| Cfr13I | GGNCC | 7 cut(s) | 231, 723, 800, 1475, 1555, 2044, 2165 |
| Csp6I | GTAC | 3 cut(s) | 364, 415, 484 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 268, 303 |
| CviQI | GTAC | 3 cut(s) | 364, 415, 484 |
| DriI | GACNNNNNGTC | 1 cut(s) | 187 |
| EaeI | YGGCCR | 1 cut(s) | 605 |
| Eam1104I | CTCTTC | 4 cut(s) | 53, 662, 1557, 1821 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 187 |
| EarI | CTCTTC | 4 cut(s) | 53, 662, 1557, 1821 |
| Eco130I | CCWWGG | 1 cut(s) | 804 |
| Eco147I | AGGCCT | 2 cut(s) | 841, 2229 |
| Eco24I | GRGCYC | 1 cut(s) | 1313 |
| Eco31I | GGTCTC | 1 cut(s) | 168 |
| Eco47I | GGWCC | 3 cut(s) | 231, 800, 1555 |
| Eco57I | CTGAAG | 5 cut(s) | 135, 1581, 1776, 2262, 2283 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 835 |
| EcoO109I | RGGNCCY | 2 cut(s) | 800, 1555 |
| EcoRII | CCWGG | 5 cut(s) | 177, 210, 245, 593, 2119 |
| EcoT14I | CCWWGG | 1 cut(s) | 804 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| EcoT38I | GRGCYC | 1 cut(s) | 1313 |
| ErhI | CCWWGG | 1 cut(s) | 804 |
| Esp3I | CGTCTC | 2 cut(s) | 1904, 2549 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1576, 1608 |
| FaqI | GGGAC | 4 cut(s) | 786, 1541, 2353, 2567 |
| FauI | CCCGC | 1 cut(s) | 2519 |
| FbaI | TGATCA | 3 cut(s) | 202, 1132, 2026 |
| FblI | GTMKAC | 3 cut(s) | 953, 1122, 2534 |
| Fnu4HI | GCNGC | 9 cut(s) | 39, 64, 291, 1370, 1441, 1512, 1717, 2105, 2193 |
| FokI | GGATG | 8 cut(s) | 308, 562, 757, 912, 1058, 1157, 1955, 2494 |
| FriOI | GRGCYC | 1 cut(s) | 1313 |
| Fsp4HI | GCNGC | 9 cut(s) | 39, 64, 291, 1370, 1441, 1512, 1717, 2105, 2193 |
| FspBI | CTAG | 4 cut(s) | 711, 1197, 1685, 1932 |
| GlaI | GCGC | 2 cut(s) | 1738, 2072 |
| GluI | GCNGC | 9 cut(s) | 39, 64, 291, 1370, 1441, 1512, 1717, 2105, 2193 |
| GsaI | CCCAGC | 1 cut(s) | 792 |
| GsuI | CTGGAG | 3 cut(s) | 1032, 1137, 1958 |
| HaeIII | GGCC | 7 cut(s) | 607, 725, 841, 1477, 2046, 2166, 2229 |
| HapII | CCGG | 2 cut(s) | 1079, 2017 |
| HhaI | GCGC | 2 cut(s) | 1739, 2073 |
| Hin6I | GCGC | 2 cut(s) | 1737, 2071 |
| HinP1I | GCGC | 2 cut(s) | 1737, 2071 |
| HincII | GTYRAC | 2 cut(s) | 513, 1468 |
| HindII | GTYRAC | 2 cut(s) | 513, 1468 |
| HindIII | AAGCTT | 2 cut(s) | 110, 147 |
| HpaI | GTTAAC | 1 cut(s) | 1468 |
| HpaII | CCGG | 2 cut(s) | 1079, 2017 |
| HphI | GGTGA | 6 cut(s) | 847, 982, 1150, 1252, 1466, 1772 |
| Hpy166II | GTNNAC | 8 cut(s) | 513, 954, 1123, 1468, 1835, 2155, 2470, 2535 |
| Hpy8I | GTNNAC | 8 cut(s) | 513, 954, 1123, 1468, 1835, 2155, 2470, 2535 |
| Hpy99I | CGWCG | 1 cut(s) | 385 |
| HpyAV | CCTTC | 8 cut(s) | 105, 944, 1120, 1543, 1751, 1776, 2258, 2400 |
| HpyCH4III | ACNGT | 6 cut(s) | 35, 231, 1883, 1894, 2115, 2539 |
| HpyCH4IV | ACGT | 1 cut(s) | 1127 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 247, 290, 560, 778, 2198, 2489 |
| HpySE526I | ACGT | 1 cut(s) | 1127 |
| HspAI | GCGC | 2 cut(s) | 1737, 2071 |
| KflI | GGGWCCC | 1 cut(s) | 800 |
| KroI | GCCGGC | 1 cut(s) | 2016 |
| KroNI | GCCGGC | 1 cut(s) | 2018 |
| Ksp22I | TGATCA | 3 cut(s) | 202, 1132, 2026 |
| KspAI | GTTAAC | 1 cut(s) | 1468 |
| LguI | GCTCTTC | 1 cut(s) | 53 |
| LmnI | GCTCC | 1 cut(s) | 385 |
| Lsp1109I | GCAGC | 7 cut(s) | 25, 75, 302, 1452, 1703, 2091, 2204 |
| LweI | GCATC | 9 cut(s) | 775, 890, 1180, 1367, 1498, 1559, 1684, 2029, 2283 |
| MaeI | CTAG | 4 cut(s) | 711, 1197, 1685, 1932 |
| MaeII | ACGT | 1 cut(s) | 1127 |
| MaeIII | GTNAC | 6 cut(s) | 715, 1454, 1927, 2092, 2300, 2428 |
| MflI | RGATCY | 1 cut(s) | 1319 |
| MhlI | GDGCHC | 1 cut(s) | 1313 |
| MlyI | GAGTC | 6 cut(s) | 197, 317, 488, 1258, 1280, 2335 |
| MmeI | TCCRAC | 3 cut(s) | 63, 363, 911 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroNI | GCCGGC | 1 cut(s) | 2016 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1612, 2247 |
| MseI | TTAA | 6 cut(s) | 600, 912, 1467, 2034, 2082, 2235 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2160 |
| MspA1I | CMGCKG | 2 cut(s) | 293, 1514 |
| MspI | CCGG | 2 cut(s) | 1079, 2017 |
| MspR9I | CCNGG | 6 cut(s) | 179, 212, 247, 595, 1079, 2121 |
| MvaI | CCWGG | 5 cut(s) | 179, 212, 247, 595, 2121 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 247, 290, 560, 778, 2198, 2489 |
| NaeI | GCCGGC | 1 cut(s) | 2018 |
| NciI | CCSGG | 1 cut(s) | 1079 |
| NgoMIV | GCCGGC | 1 cut(s) | 2016 |
| NlaIV | GGNNCC | 6 cut(s) | 430, 724, 801, 802, 1557, 1615 |
| NmuCI | GTSAC | 4 cut(s) | 1454, 1927, 2300, 2428 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 776 |
| NspV | TTCGAA | 3 cut(s) | 106, 650, 1097 |
| PagI | TCATGA | 1 cut(s) | 115 |
| PceI | AGGCCT | 2 cut(s) | 841, 2229 |
| PciSI | GCTCTTC | 1 cut(s) | 53 |
| PdiI | GCCGGC | 1 cut(s) | 2018 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1612, 2247 |
| PfeI | GAWTC | 8 cut(s) | 86, 674, 815, 1007, 1396, 2347, 2503, 2549 |
| PflFI | GACNNNGTC | 1 cut(s) | 2579 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 184, 745 |
| PkrI | GCNGC | 9 cut(s) | 40, 65, 292, 1371, 1442, 1513, 1718, 2106, 2194 |
| PleI | GAGTC | 6 cut(s) | 196, 316, 487, 1257, 1279, 2335 |
| PpsI | GAGTC | 6 cut(s) | 196, 316, 487, 1257, 1279, 2335 |
| PpuMI | RGGWCCY | 2 cut(s) | 800, 1555 |
| PshAI | GACNNNNGTC | 1 cut(s) | 213 |
| PshBI | ATTAAT | 2 cut(s) | 2082, 2235 |
| Psp5II | RGGWCCY | 2 cut(s) | 800, 1555 |
| Psp6I | CCWGG | 5 cut(s) | 177, 210, 245, 593, 2119 |
| PspFI | CCCAGC | 1 cut(s) | 788 |
| PspGI | CCWGG | 5 cut(s) | 177, 210, 245, 593, 2119 |
| PspN4I | GGNNCC | 6 cut(s) | 430, 724, 801, 802, 1557, 1615 |
| PspPI | GGNCC | 7 cut(s) | 231, 723, 800, 1475, 1555, 2044, 2165 |
| PspPPI | RGGWCCY | 2 cut(s) | 800, 1555 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1597, 1629 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1537, 2003, 2257 |
| PsuI | RGATCY | 1 cut(s) | 1319 |
| PsyI | GACNNNGTC | 1 cut(s) | 2579 |
| PvuII | CAGCTG | 1 cut(s) | 293 |
| RsaI | GTAC | 3 cut(s) | 365, 416, 485 |
| RsaNI | GTAC | 3 cut(s) | 364, 415, 484 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2160 |
| SapI | GCTCTTC | 1 cut(s) | 53 |
| SaqAI | TTAA | 6 cut(s) | 600, 912, 1467, 2034, 2082, 2235 |
| SatI | GCNGC | 9 cut(s) | 39, 64, 291, 1370, 1441, 1512, 1717, 2105, 2193 |
| Sau96I | GGNCC | 7 cut(s) | 231, 723, 800, 1475, 1555, 2044, 2165 |
| ScaI | AGTACT | 1 cut(s) | 416 |
| SchI | GAGTC | 6 cut(s) | 197, 317, 488, 1258, 1280, 2335 |
| ScrFI | CCNGG | 6 cut(s) | 179, 212, 247, 595, 1079, 2121 |
| SduI | GDGCHC | 1 cut(s) | 1313 |
| SfaNI | GCATC | 9 cut(s) | 775, 890, 1180, 1367, 1498, 1559, 1684, 2029, 2283 |
| SfuI | TTCGAA | 3 cut(s) | 106, 650, 1097 |
| SinI | GGWCC | 3 cut(s) | 231, 800, 1555 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2160 |
| SmlI | CTYRAG | 2 cut(s) | 140, 1907 |
| SmoI | CTYRAG | 2 cut(s) | 140, 1907 |
| SpeI | ACTAGT | 1 cut(s) | 1931 |
| SseBI | AGGCCT | 2 cut(s) | 841, 2229 |
| SsiI | CCGC | 5 cut(s) | 1370, 1512, 1709, 1838, 2526 |
| SspMI | CTAG | 4 cut(s) | 711, 1197, 1685, 1932 |
| StuI | AGGCCT | 2 cut(s) | 841, 2229 |
| StyD4I | CCNGG | 6 cut(s) | 177, 210, 245, 593, 1077, 2119 |
| StyI | CCWWGG | 1 cut(s) | 804 |
| TaaI | ACNGT | 6 cut(s) | 35, 231, 1883, 1894, 2115, 2539 |
| TaiI | ACGT | 1 cut(s) | 1130 |
| TaqI | TCGA | 7 cut(s) | 106, 306, 626, 650, 1097, 1638, 2324 |
| TaqII | GACCGA | 1 cut(s) | 933 |
| TatI | WGTACW | 1 cut(s) | 414 |
| TauI | GCSGC | 2 cut(s) | 1372, 1514 |
| TfiI | GAWTC | 8 cut(s) | 86, 674, 815, 1007, 1396, 2347, 2503, 2549 |
| Tru1I | TTAA | 6 cut(s) | 600, 912, 1467, 2034, 2082, 2235 |
| Tru9I | TTAA | 6 cut(s) | 600, 912, 1467, 2034, 2082, 2235 |
| TscAI | CASTG | 8 cut(s) | 38, 286, 746, 756, 1267, 1963, 2154, 2202 |
| TseFI | GTSAC | 4 cut(s) | 1454, 1927, 2300, 2428 |
| TseI | GCWGC | 7 cut(s) | 38, 63, 290, 1440, 1716, 2104, 2192 |
| Tsp45I | GTSAC | 4 cut(s) | 1454, 1927, 2300, 2428 |
| TspRI | CASTG | 8 cut(s) | 38, 286, 746, 756, 1267, 1963, 2154, 2202 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2579 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 184, 745 |
| VpaK11BI | GGWCC | 3 cut(s) | 231, 800, 1555 |
| VspI | ATTAAT | 2 cut(s) | 2082, 2235 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 835 |
| XapI | RAATTY | 4 cut(s) | 371, 1017, 1654, 2494 |
| XbaI | TCTAGA | 1 cut(s) | 710 |
| XceI | RCATGY | 1 cut(s) | 776 |
| XmiI | GTMKAC | 3 cut(s) | 953, 1122, 2534 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1612, 2247 |
| XspI | CTAG | 4 cut(s) | 711, 1197, 1685, 1932 |
| ZrmI | AGTACT | 1 cut(s) | 416 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |