superfamily protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G23520 |
| fragaria_vesca | FvH4_1g14760 |
| malus_domestica | MD02G1160700.v1.1 MD02G1160800.v1.1 MD15G1274900.v1.1 |
| prunus_persica | Prupe.7G142800_v2.0.a1 Prupe.7G142900_v2.0.a1 |
| pyrus_communis | pycom02g12670 pycom02g12680 pycom02g12690 pycom15g23800 |
| rosa_chinensis | RchiOBHm_Chr2g0103691 RchiOBHm_Chr2g0103701 |
| rosa_laevigata | RLG00000017249 RLG00000017250 |
| rosa_multiflora | Rmu_sc0001852.1_g000009 Rmu_sc0001852.1_g000010 |
| rosa_roxburghii | Rroxscaffold_2G00139470 Rroxscaffold_2G00139480 Rroxscaffold_5G00365360 |
| rosa_rugosa | Rorug02G0116600 Rorug02G0116700 |
| rosa_samantha | Rh2AG165300 Rh2AG165400 Rh2BG172500 Rh2BG172600 Rh2CG171400 Rh2CG171500 Rh2DG170900 Rh2DG171000 |
| rosa_wichuraiana | Rw2G012950 Rw2G012960 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1080 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 925 |
| AccBSI | CCGCTC | 1 cut(s) | 271 |
| AccI | GTMKAC | 1 cut(s) | 2047 |
| AciI | CCGC | 3 cut(s) | 271, 858, 1830 |
| AclWI | GGATC | 6 cut(s) | 151, 1058, 1282, 1353, 1810, 1945 |
| AcoI | YGGCCR | 2 cut(s) | 785, 1570 |
| AcsI | RAATTY | 3 cut(s) | 505, 2140, 2547 |
| AcuI | CTGAAG | 5 cut(s) | 80, 434, 1242, 1764, 2013 |
| AfaI | GTAC | 7 cut(s) | 338, 347, 389, 446, 767, 1381, 2391 |
| AfeI | AGCGCT | 1 cut(s) | 315 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 190, 925, 1017, 2199 |
| AjnI | CCWGG | 6 cut(s) | 159, 183, 773, 1269, 1818, 2356 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1591, 1623 |
| Alw21I | GWGCWC | 1 cut(s) | 306 |
| Alw26I | GTCTC | 4 cut(s) | 170, 1328, 2141, 2364 |
| AlwI | GGATC | 6 cut(s) | 151, 1058, 1282, 1353, 1810, 1945 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 774, 2494 |
| Ama87I | CYCGRG | 1 cut(s) | 1654 |
| Aor51HI | AGCGCT | 1 cut(s) | 315 |
| AoxI | GGCC | 8 cut(s) | 785, 903, 1019, 1570, 2281, 2401, 2557, 2609 |
| ApoI | RAATTY | 3 cut(s) | 505, 2140, 2547 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 335, 367 |
| AseI | ATTAAT | 1 cut(s) | 2319 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2484 |
| AspLEI | GCGC | 1 cut(s) | 316 |
| AspS9I | GGNCC | 7 cut(s) | 204, 903, 980, 2281, 2402, 2452, 2558 |
| AsuC2I | CCSGG | 1 cut(s) | 901 |
| AsuHPI | GGTGA | 6 cut(s) | 322, 1162, 1259, 1330, 2009, 2680 |
| AvaI | CYCGRG | 1 cut(s) | 1654 |
| AvaII | GGWCC | 3 cut(s) | 204, 980, 2452 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2796, 2829 |
| BalI | TGGCCA | 1 cut(s) | 787 |
| BanI | GGYRCC | 1 cut(s) | 1080 |
| BanII | GRGCYC | 3 cut(s) | 306, 1436, 1496 |
| BbsI | GAAGAC | 2 cut(s) | 345, 2190 |
| Bbv12I | GWGCWC | 1 cut(s) | 306 |
| BbvCI | CCTCAGC | 1 cut(s) | 374 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 64, 98, 2408, 2442 |
| BciT130I | CCWGG | 6 cut(s) | 161, 185, 775, 1271, 1820, 2358 |
| BciVI | GTATCC | 1 cut(s) | 2107 |
| BclI | TGATCA | 2 cut(s) | 367, 2263 |
| BcnI | CCSGG | 1 cut(s) | 901 |
| BcoDI | GTCTC | 4 cut(s) | 170, 1328, 2141, 2364 |
| BfaI | CTAG | 7 cut(s) | 122, 219, 416, 570, 1928, 2169, 2552 |
| BfmI | CTRYAG | 2 cut(s) | 1191, 2163 |
| BfoI | RGCGCY | 1 cut(s) | 317 |
| BfuI | GTATCC | 1 cut(s) | 2107 |
| BlpI | GCTNAGC | 1 cut(s) | 267 |
| Bme1390I | CCNGG | 7 cut(s) | 161, 185, 775, 901, 1271, 1820, 2358 |
| Bme18I | GGWCC | 3 cut(s) | 204, 980, 2452 |
| BmeT110I | CYCGRG | 1 cut(s) | 1654 |
| BmgT120I | GGNCC | 7 cut(s) | 204, 903, 980, 2281, 2402, 2452, 2558 |
| BmrFI | CCNGG | 7 cut(s) | 161, 185, 775, 901, 1271, 1820, 2358 |
| BmrI | ACTGGG | 1 cut(s) | 2233 |
| BmsI | GCATC | 7 cut(s) | 140, 955, 1100, 1252, 1272, 1927, 2520 |
| BmuI | ACTGGG | 1 cut(s) | 2233 |
| BpiI | GAAGAC | 2 cut(s) | 345, 2190 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 228, 260, 1637, 1669 |
| BpmI | CTGGAG | 1 cut(s) | 1317 |
| Bpu10I | CCTNAGC | 4 cut(s) | 110, 300, 374, 1314 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 267 |
| BpuMI | CCSGG | 1 cut(s) | 901 |
| BsaI | GGTCTC | 2 cut(s) | 170, 2141 |
| BsaJI | CCNNGG | 4 cut(s) | 159, 900, 984, 1270 |
| BsaWI | WCCGGW | 2 cut(s) | 880, 2150 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 190, 925, 1017, 2199 |
| Bse118I | RCCGGY | 1 cut(s) | 2253 |
| Bse1I | ACTGG | 8 cut(s) | 868, 919, 936, 1075, 1141, 1219, 2193, 2228 |
| Bse3DI | GCAATG | 2 cut(s) | 455, 1844 |
| BseBI | CCWGG | 6 cut(s) | 161, 185, 775, 1271, 1820, 2358 |
| BseDI | CCNNGG | 4 cut(s) | 159, 900, 984, 1270 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 190, 925, 1017, 2199 |
| BseMI | GCAATG | 2 cut(s) | 455, 1844 |
| BseNI | ACTGG | 8 cut(s) | 868, 919, 936, 1075, 1141, 1219, 2193, 2228 |
| BseYI | CCCAGC | 2 cut(s) | 968, 1238 |
| BsgI | GTGCAG | 3 cut(s) | 1977, 2448, 2626 |
| BshFI | GGCC | 8 cut(s) | 787, 905, 1021, 1572, 2283, 2403, 2559, 2611 |
| BshNI | GGYRCC | 1 cut(s) | 1080 |
| BsiHKAI | GWGCWC | 1 cut(s) | 306 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1654 |
| BsiSI | CCGG | 5 cut(s) | 881, 900, 1573, 2151, 2254 |
| BslFI | GGGAC | 6 cut(s) | 142, 966, 1672, 1870, 2240, 2465 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 190, 925, 1017, 2199 |
| BsmAI | GTCTC | 4 cut(s) | 170, 1328, 2141, 2364 |
| BsmFI | GGGAC | 6 cut(s) | 142, 966, 1672, 1870, 2240, 2465 |
| BsmI | GAATGC | 1 cut(s) | 1832 |
| BsnI | GGCC | 8 cut(s) | 787, 905, 1021, 1572, 2283, 2403, 2559, 2611 |
| Bso31I | GGTCTC | 2 cut(s) | 170, 2141 |
| BsoBI | CYCGRG | 1 cut(s) | 1654 |
| Bsp1286I | GDGCHC | 3 cut(s) | 306, 1436, 1496 |
| Bsp1407I | TGTACA | 1 cut(s) | 765 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 267 |
| BspACI | CCGC | 3 cut(s) | 271, 858, 1830 |
| BspANI | GGCC | 8 cut(s) | 787, 905, 1021, 1572, 2283, 2403, 2559, 2611 |
| BspHI | TCATGA | 1 cut(s) | 1348 |
| BspMAI | CTGCAG | 1 cut(s) | 2167 |
| BspPI | GGATC | 6 cut(s) | 151, 1058, 1282, 1353, 1810, 1945 |
| BspQI | GCTCTTC | 2 cut(s) | 5, 1424 |
| BspT107I | GGYRCC | 1 cut(s) | 1080 |
| BspTNI | GGTCTC | 2 cut(s) | 170, 2141 |
| BsrBI | CCGCTC | 1 cut(s) | 271 |
| BsrDI | GCAATG | 2 cut(s) | 455, 1844 |
| BsrFI | RCCGGY | 1 cut(s) | 2253 |
| BsrGI | TGTACA | 1 cut(s) | 765 |
| BsrI | ACTGG | 8 cut(s) | 868, 919, 936, 1075, 1141, 1219, 2193, 2228 |
| BssAI | RCCGGY | 1 cut(s) | 2253 |
| BssECI | CCNNGG | 4 cut(s) | 159, 900, 984, 1270 |
| BssT1I | CCWWGG | 1 cut(s) | 984 |
| Bst2UI | CCWGG | 6 cut(s) | 161, 185, 775, 1271, 1820, 2358 |
| Bst4CI | ACNGT | 7 cut(s) | 204, 425, 550, 625, 770, 1861, 2776 |
| Bst6I | CTCTTC | 7 cut(s) | 5, 836, 1424, 1978, 2014, 2058, 2775 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 958, 1955, 2435 |
| BstAUI | TGTACA | 1 cut(s) | 765 |
| BstC8I | GCNNGC | 7 cut(s) | 216, 1267, 1287, 2134, 2255, 2496, 2609 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1015 |
| BstH2I | RGCGCY | 1 cut(s) | 317 |
| BstHHI | GCGC | 1 cut(s) | 316 |
| BstMAI | GTCTC | 4 cut(s) | 170, 1328, 2141, 2364 |
| BstNI | CCWGG | 6 cut(s) | 161, 185, 775, 1271, 1820, 2358 |
| BstNSI | RCATGY | 2 cut(s) | 956, 2253 |
| BstSCI | CCNGG | 7 cut(s) | 159, 183, 773, 899, 1269, 1818, 2356 |
| BstSFI | CTRYAG | 2 cut(s) | 1191, 2163 |
| BstV2I | GAAGAC | 2 cut(s) | 345, 2190 |
| BstX2I | RGATCY | 1 cut(s) | 1815 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 991 |
| BstYI | RGATCY | 1 cut(s) | 1815 |
| BsuI | GTATCC | 1 cut(s) | 2107 |
| BsuRI | GGCC | 8 cut(s) | 787, 905, 1021, 1572, 2283, 2403, 2559, 2611 |
| BtsI | GCAGTG | 2 cut(s) | 252, 1944 |
| Cac8I | GCNNGC | 7 cut(s) | 216, 1267, 1287, 2134, 2255, 2496, 2609 |
| CaiI | CAGNNNCTG | 2 cut(s) | 774, 2494 |
| CciI | TCATGA | 1 cut(s) | 1348 |
| CfoI | GCGC | 1 cut(s) | 316 |
| Cfr10I | RCCGGY | 1 cut(s) | 2253 |
| Cfr13I | GGNCC | 7 cut(s) | 204, 903, 980, 2281, 2402, 2452, 2558 |
| CseI | GACGC | 1 cut(s) | 1700 |
| Csp6I | GTAC | 7 cut(s) | 337, 346, 388, 445, 766, 1380, 2390 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 241, 276, 1057, 1092, 1372, 1407 |
| CviQI | GTAC | 7 cut(s) | 337, 346, 388, 445, 766, 1380, 2390 |
| EaeI | YGGCCR | 2 cut(s) | 785, 1570 |
| Eam1104I | CTCTTC | 7 cut(s) | 5, 836, 1424, 1978, 2014, 2058, 2775 |
| EarI | CTCTTC | 7 cut(s) | 5, 836, 1424, 1978, 2014, 2058, 2775 |
| Ecl136II | GAGCTC | 1 cut(s) | 304 |
| Eco130I | CCWWGG | 1 cut(s) | 984 |
| Eco147I | AGGCCT | 1 cut(s) | 1021 |
| Eco24I | GRGCYC | 3 cut(s) | 306, 1436, 1496 |
| Eco31I | GGTCTC | 2 cut(s) | 170, 2141 |
| Eco47I | GGWCC | 3 cut(s) | 204, 980, 2452 |
| Eco47III | AGCGCT | 1 cut(s) | 315 |
| Eco53kI | GAGCTC | 1 cut(s) | 304 |
| Eco57I | CTGAAG | 5 cut(s) | 80, 434, 1242, 1764, 2013 |
| Eco88I | CYCGRG | 1 cut(s) | 1654 |
| EcoICRI | GAGCTC | 1 cut(s) | 304 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1015 |
| EcoO109I | RGGNCCY | 1 cut(s) | 980 |
| EcoRI | GAATTC | 1 cut(s) | 2547 |
| EcoRII | CCWGG | 6 cut(s) | 159, 183, 773, 1269, 1818, 2356 |
| EcoT14I | CCWWGG | 1 cut(s) | 984 |
| EcoT38I | GRGCYC | 3 cut(s) | 306, 1436, 1496 |
| ErhI | CCWWGG | 1 cut(s) | 984 |
| FaqI | GGGAC | 6 cut(s) | 142, 966, 1672, 1870, 2240, 2465 |
| FbaI | TGATCA | 2 cut(s) | 367, 2263 |
| FblI | GTMKAC | 1 cut(s) | 2047 |
| FriOI | GRGCYC | 3 cut(s) | 306, 1436, 1496 |
| FspBI | CTAG | 7 cut(s) | 122, 219, 416, 570, 1928, 2169, 2552 |
| GlaI | GCGC | 1 cut(s) | 315 |
| GsaI | CCCAGC | 2 cut(s) | 972, 1242 |
| GsuI | CTGGAG | 1 cut(s) | 1317 |
| HaeII | RGCGCY | 1 cut(s) | 317 |
| HaeIII | GGCC | 8 cut(s) | 787, 905, 1021, 1572, 2283, 2403, 2559, 2611 |
| HapII | CCGG | 5 cut(s) | 881, 900, 1573, 2151, 2254 |
| HgaI | GACGC | 1 cut(s) | 1700 |
| HhaI | GCGC | 1 cut(s) | 316 |
| Hin6I | GCGC | 1 cut(s) | 314 |
| HinP1I | GCGC | 1 cut(s) | 314 |
| HincII | GTYRAC | 3 cut(s) | 693, 1134, 1212 |
| HindII | GTYRAC | 3 cut(s) | 693, 1134, 1212 |
| HpaI | GTTAAC | 1 cut(s) | 693 |
| HpaII | CCGG | 5 cut(s) | 881, 900, 1573, 2151, 2254 |
| HphI | GGTGA | 6 cut(s) | 322, 1162, 1259, 1330, 2009, 2680 |
| Hpy166II | GTNNAC | 8 cut(s) | 621, 693, 766, 1134, 1212, 2048, 2392, 2707 |
| Hpy8I | GTNNAC | 8 cut(s) | 621, 693, 766, 1134, 1212, 2048, 2392, 2707 |
| HpyCH4III | ACNGT | 7 cut(s) | 204, 425, 550, 625, 770, 1861, 2776 |
| HspAI | GCGC | 1 cut(s) | 314 |
| KflI | GGGWCCC | 1 cut(s) | 980 |
| KroI | GCCGGC | 1 cut(s) | 2253 |
| KroNI | GCCGGC | 1 cut(s) | 2255 |
| Ksp22I | TGATCA | 2 cut(s) | 367, 2263 |
| KspAI | GTTAAC | 1 cut(s) | 693 |
| LguI | GCTCTTC | 2 cut(s) | 5, 1424 |
| LmnI | GCTCC | 5 cut(s) | 90, 228, 809, 1298, 1775 |
| LweI | GCATC | 7 cut(s) | 140, 955, 1100, 1252, 1272, 1927, 2520 |
| MaeI | CTAG | 7 cut(s) | 122, 219, 416, 570, 1928, 2169, 2552 |
| MaeIII | GTNAC | 8 cut(s) | 895, 1033, 1121, 1372, 1889, 2329, 2665, 2812 |
| MbiI | CCGCTC | 1 cut(s) | 271 |
| MfeI | CAATTG | 1 cut(s) | 946 |
| MflI | RGATCY | 1 cut(s) | 1815 |
| MhlI | GDGCHC | 3 cut(s) | 306, 1436, 1496 |
| MlsI | TGGCCA | 1 cut(s) | 787 |
| MluNI | TGGCCA | 1 cut(s) | 787 |
| MlyI | GAGTC | 6 cut(s) | 290, 1463, 1664, 1718, 2081, 2377 |
| Mox20I | TGGCCA | 1 cut(s) | 787 |
| MroNI | GCCGGC | 1 cut(s) | 2253 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2484 |
| MscI | TGGCCA | 1 cut(s) | 787 |
| MseI | TTAA | 9 cut(s) | 153, 398, 692, 780, 1092, 2271, 2319, 2348, 2442 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2397 |
| Msp20I | TGGCCA | 1 cut(s) | 787 |
| MspA1I | CMGCKG | 4 cut(s) | 266, 373, 1238, 2432 |
| MspI | CCGG | 5 cut(s) | 881, 900, 1573, 2151, 2254 |
| MspR9I | CCNGG | 7 cut(s) | 161, 185, 775, 901, 1271, 1820, 2358 |
| MunI | CAATTG | 1 cut(s) | 946 |
| Mva1269I | GAATGC | 1 cut(s) | 1832 |
| MvaI | CCWGG | 6 cut(s) | 161, 185, 775, 1271, 1820, 2358 |
| NaeI | GCCGGC | 1 cut(s) | 2255 |
| NciI | CCSGG | 1 cut(s) | 901 |
| NgoMIV | GCCGGC | 1 cut(s) | 2253 |
| NmeAIII | GCCGAG | 1 cut(s) | 1894 |
| NmuCI | GTSAC | 5 cut(s) | 1033, 1121, 1889, 2329, 2812 |
| NspI | RCATGY | 2 cut(s) | 956, 2253 |
| PagI | TCATGA | 1 cut(s) | 1348 |
| PceI | AGGCCT | 1 cut(s) | 1021 |
| PciSI | GCTCTTC | 2 cut(s) | 5, 1424 |
| PctI | GAATGC | 1 cut(s) | 1832 |
| PdiI | GCCGGC | 1 cut(s) | 2255 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2484 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 925 |
| PfoI | TCCNGGA | 1 cut(s) | 1818 |
| PleI | GAGTC | 6 cut(s) | 289, 1462, 1664, 1718, 2080, 2377 |
| PpsI | GAGTC | 6 cut(s) | 289, 1462, 1664, 1718, 2080, 2377 |
| PpuMI | RGGWCCY | 1 cut(s) | 980 |
| PshBI | ATTAAT | 1 cut(s) | 2319 |
| Psp124BI | GAGCTC | 1 cut(s) | 306 |
| Psp5II | RGGWCCY | 1 cut(s) | 980 |
| Psp6I | CCWGG | 6 cut(s) | 159, 183, 773, 1269, 1818, 2356 |
| PspFI | CCCAGC | 2 cut(s) | 968, 1238 |
| PspGI | CCWGG | 6 cut(s) | 159, 183, 773, 1269, 1818, 2356 |
| PspPI | GGNCC | 7 cut(s) | 204, 903, 980, 2281, 2402, 2452, 2558 |
| PspPPI | RGGWCCY | 1 cut(s) | 980 |
| PstI | CTGCAG | 1 cut(s) | 2167 |
| PstNI | CAGNNNCTG | 2 cut(s) | 774, 2494 |
| PsuI | RGATCY | 1 cut(s) | 1815 |
| PvuII | CAGCTG | 4 cut(s) | 266, 373, 1238, 2432 |
| RsaI | GTAC | 7 cut(s) | 338, 347, 389, 446, 767, 1381, 2391 |
| RsaNI | GTAC | 7 cut(s) | 337, 346, 388, 445, 766, 1380, 2390 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2397 |
| SacI | GAGCTC | 1 cut(s) | 306 |
| SapI | GCTCTTC | 2 cut(s) | 5, 1424 |
| SaqAI | TTAA | 9 cut(s) | 153, 398, 692, 780, 1092, 2271, 2319, 2348, 2442 |
| Sau96I | GGNCC | 7 cut(s) | 204, 903, 980, 2281, 2402, 2452, 2558 |
| SchI | GAGTC | 6 cut(s) | 290, 1463, 1664, 1718, 2081, 2377 |
| ScrFI | CCNGG | 7 cut(s) | 161, 185, 775, 901, 1271, 1820, 2358 |
| SduI | GDGCHC | 3 cut(s) | 306, 1436, 1496 |
| SfaNI | GCATC | 7 cut(s) | 140, 955, 1100, 1252, 1272, 1927, 2520 |
| SfcI | CTRYAG | 2 cut(s) | 1191, 2163 |
| SinI | GGWCC | 3 cut(s) | 204, 980, 2452 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2397 |
| SseBI | AGGCCT | 1 cut(s) | 1021 |
| SsiI | CCGC | 3 cut(s) | 271, 858, 1830 |
| SspMI | CTAG | 7 cut(s) | 122, 219, 416, 570, 1928, 2169, 2552 |
| SstI | GAGCTC | 1 cut(s) | 306 |
| StuI | AGGCCT | 1 cut(s) | 1021 |
| StyD4I | CCNGG | 7 cut(s) | 159, 183, 773, 899, 1269, 1818, 2356 |
| StyI | CCWWGG | 1 cut(s) | 984 |
| TaaI | ACNGT | 7 cut(s) | 204, 425, 550, 625, 770, 1861, 2776 |
| TaqI | TCGA | 5 cut(s) | 53, 74, 279, 830, 2302 |
| TaqII | GACCGA | 1 cut(s) | 2469 |
| TatI | WGTACW | 2 cut(s) | 345, 765 |
| TauI | GCSGC | 1 cut(s) | 1833 |
| Tru1I | TTAA | 9 cut(s) | 153, 398, 692, 780, 1092, 2271, 2319, 2348, 2442 |
| Tru9I | TTAA | 9 cut(s) | 153, 398, 692, 780, 1092, 2271, 2319, 2348, 2442 |
| TseFI | GTSAC | 5 cut(s) | 1033, 1121, 1889, 2329, 2812 |
| Tsp45I | GTSAC | 5 cut(s) | 1033, 1121, 1889, 2329, 2812 |
| TspDTI | ATGAA | 7 cut(s) | 324, 662, 1245, 1442, 1833, 1892, 2196 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 925 |
| VpaK11BI | GGWCC | 3 cut(s) | 204, 980, 2452 |
| VspI | ATTAAT | 1 cut(s) | 2319 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1015 |
| XapI | RAATTY | 3 cut(s) | 505, 2140, 2547 |
| XbaI | TCTAGA | 2 cut(s) | 121, 2551 |
| XceI | RCATGY | 2 cut(s) | 956, 2253 |
| XmiI | GTMKAC | 1 cut(s) | 2047 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2484 |
| XspI | CTAG | 7 cut(s) | 122, 219, 416, 570, 1928, 2169, 2552 |