Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004440

Physical Location & Seq

Genomic Coordinates Reverse (-)

13531784 .. 13535569

Gene Structure 3786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2880 bp

ATGCATTTTTCAATATGGAAGCCCCTATATCAGTGTGCTGCTCTGCTTATGGACAAGAAGAGCAGCAGCAGCAGCAAGAAGAAAGATGGCTCAGATTCGACCCTTGACATCAGAAAATCGACATCAATTCTCCGAAAACTTCAGGAGAACAAGCTCAGGGAAGCTCTAGAGGAAGCATCAGAAGATGGATCGCTATTTAAGTCCCAGGATATTGAAGCTGAGACAAACCAGGATGAAGGTCTTGGACGGTCCAGATCGCTTGCTAGGCTCCATGCCCAGAGAGAGTTCCTCAGAGCCACTGCGCTTGCAGCTGAGCGCTATTTCGAGTCTGAGGATGACATCCCTGAGCTCAATGAAGCGCTCTCTAAGTTCCTCACTATGTACCCAAAGTACAAGTCTTCGGAGAAGATTGATCAGCTGAGGATGGATGAGTACGCACATTTAACCCCAAAGGTATGCCTAGACTACTGTGGATTTGGTCTTTTTTCGTACCTTCAGACATTGCATTATTGGGAATCTTCTACATTTAGCTTGTCTGAGATTACTGCAAATTTGAATAATCATGCTCTTTATGGTGGTGCTGAGAAAGGAACTGTGGAACATGATATAAAGACTAGGATTATGGATTATTTGAACATTCCTGAGAACGAGTATGGTCTCGTGTTTACTGTGAGTAGAGGGTCTGCTTTTAGATTGTTGGCTGAATCATACCCTTTTCATACAAACAAAAGGTTGTTAACCATGTTTGATTACGAAAGTCAATCTGTGAATTGGATGGCTCAGAGTGCCAGAGAGAAAGGTGCAAAGGTGTACAGTGCCTGGTTTAAGTGGCCAACCTTGAAACTCTGCTCCACTGATTTGAGAAAGCAGATTTCGAGCAAGAAGAAGAGGAAGAAGGATTCCGCAACTGGTCTTTTTGTGTTTCCGGTTCAGTCCAGAGTTACCGGGGCCAAGTATTCTTACCAGTGGATGGCATTGGCACAGCAGAACAATTGGCATGTCATGCTTGATGCTGGGTCATTGGGTCCCAAGGACATGGATTCACTTGGGTTGTCCTTATTCAGGCCTGATTTTATTGTCACATCATTTTACAGGGTTTTTGGGTTTGATCCCACTGGATTTGGGTGCCTTTTGATTAAGAAATCTGTAATAGGATGCCTTCAAAGTCACTCAGGGTCTACTGGTTCTGGTATGGTGAAAATTACCCCTGAATACCCAATGTATTTGAGTGATTCTGTAGATGGTCTGGATAAGTTGACTGGAACTGAAGATGATGAAGTAGCTGGGGATGGTGAAAAAAGTTCCGATGCTCGCCAGGGATCACAGATGCCTGCCTTCTCTGGAGCATACACGTCTGCTCAGGTGAGGGATGTTTTTGAGACTGAGATGGATCATGATAACAGCTCTGTCATAGATGTAACAAGTACCACCATATTTGAAGAAGCAGAGAGTATGTCAGTAGGGGAGATGATGAAGAGCCCTGTTTTCAGTGAAGATGAGTCATCAGATAATTCCATTTGGATTGATTTGGGTCAGAGCCCAATGGGTTCCGAAAATGGAAACCAGATTTACAAACAGAAGATTTCCTCTCCTTTGCCTCCTTTTTGGTTTCTTGGCCGGAAGAATCATAAGCAACAATCCCCAAAACCTTCTTCTAAGATATATGGCAGCCCCATCTATGATGACAAAGAGATAAACTCGGGGACACATGATGACTCCCATGTGCTGTCATTTGACGCTGCTATCTTATCAGTTTCTATGGAATTGGACTCTGTCAAGGAGGTTCCTGAAGAAGAACAATTTGCACAGACAGGCTCCATCTCACAAAATGGCAAAAGTGGTTCTGGTCATAATAGAGAGATCCAGGAAGAATGCGGCAGCAGCAATTCATTGCCTAATGGGACGGTGTTGAACTCTACAATGAATGGTTTTTGTCACAATGATTCAACTCCTACTTCTCGGCATCATAGACTAGAGAATGGATCAACCACTGCAAGTTGTGCAGAGATAAGAGAGAGCGCCATCAGAAGAGAAACTGAAGGTGAGTTTAGGTTGTTAGGGAGAAGAGAGGGGAGTAGATTCACTAATGGTAGACTTTTTGGTGTGGAAGAGAATGAGTCATCAAACAGGGGGAGAAGGGTATCCTTTAGCATAGAAGATACCCATAAAGATCATGCAAGCCAAAATTTTGAGACCGGAGAAATATCTGCAGCGAGTCTGGAAGATGAAGACTACACCAGTGATGGGGAATATGCTGATGGACAAGACTGGGACAGGAGGGAACCTGAGATAACATGCCGGCATATTGATCATGTTAATATGTTGGGCCTCAACAAGACCACCTCTCGACTACGATTTTTGATTAATTGGCTTGTGACCTCGTTGCTGCAATTAAGGTTGCCTGGTTCTGATGGAGACAACAGAAGGACTCTGGTACACATATATGGCCCGAAAATAAAGTACGAGAGGGGTGCAGCTGTTGCTTTCAATTTGAGAGACCGAAATAGAGGGCTAATCAACCCAGAAGTTGTTCAGAAGCTGGCTGAAAAAGAAGGCATCTCTCTTGGCATTGGTTTTCTCAATCACATAAGAATTCTAGATGGCCCAAGACAGCAACATGGGGCTGCGCAACTTCAAGATACAACGCTGTGCAGGCCAATGGAAAATGGCAGAAAGGATAAAAAAGGTGGGTTCGTGCGGGTTGAGGTTGTAACAGCTTCTCTGGGTTTTCTCACCGACTTTGAGGATGTTTATAAGTTATGGGCCTTTGTGGCGAAGTTTCTAAATCCAGCCTTTATCAGAGAGGGTGGGCTGCCTACTGTTGAAGAGGAATCTGAGATAAAATCTGAAACATCTGTCACTGATTCTGTTCCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00790 map00790

Pfam Domains

Protein Families

No domains found.

Protein Analysis

959

Amino Acids

107.47

Weight (kDa)

5.48

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23520
fragaria_vesca	FvH4_1g14760
malus_domestica	MD02G1160700.v1.1 MD02G1160800.v1.1 MD15G1274900.v1.1
prunus_persica	Prupe.7G142800_v2.0.a1 Prupe.7G142900_v2.0.a1
pyrus_communis	pycom02g12670 pycom02g12680 pycom02g12690 pycom15g23800
rosa_chinensis	RchiOBHm_Chr2g0103691 RchiOBHm_Chr2g0103701
rosa_laevigata	RLG00000017249 RLG00000017250
rosa_multiflora	Rmu_sc0001852.1_g000009 Rmu_sc0001852.1_g000010
rosa_roxburghii	Rroxscaffold_2G00139470 Rroxscaffold_2G00139480 Rroxscaffold_5G00365360
rosa_rugosa	Rorug02G0116600 Rorug02G0116700
rosa_samantha	Rh2AG165300 Rh2AG165400 Rh2BG172500 Rh2BG172600 Rh2CG171400 Rh2CG171500 Rh2DG170900 Rh2DG171000
rosa_wichuraiana	Rw2G012950 Rw2G012960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2754
Acc16I	TGCGCA	1 cut(s)	2628
AccB1I	GGYRCC	1 cut(s)	1125
AccB7I	CCANNNNNTGG	1 cut(s)	970
AccI	GTMKAC	2 cut(s)	1178, 2092
AciI	CCGC	3 cut(s)	903, 1875, 2698
AclWI	GGATC	6 cut(s)	196, 1103, 1327, 1398, 1855, 1990
AcoI	YGGCCR	2 cut(s)	830, 1615
AcsI	RAATTY	3 cut(s)	550, 2185, 2592
AcuI	CTGAAG	5 cut(s)	125, 479, 1287, 1809, 2058
AfaI	GTAC	8 cut(s)	383, 392, 434, 491, 812, 1426, 2436, 2462
AfeI	AGCGCT	2 cut(s)	317, 360
AfiI	CCNNNNNNNGG	3 cut(s)	970, 1062, 2244
AflIII	ACRYGT	1 cut(s)	1350
AjiI	CACGTC	1 cut(s)	1353
AjnI	CCWGG	6 cut(s)	204, 228, 818, 1314, 1863, 2401
AjuI	GAANNNNNNNTTGG	2 cut(s)	1636, 1668
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	6 cut(s)	215, 662, 1373, 2186, 2409, 2490
AlwI	GGATC	6 cut(s)	196, 1103, 1327, 1398, 1855, 1990
AlwNI	CAGNNNCTG	2 cut(s)	819, 2539
Ama87I	CYCGRG	1 cut(s)	1699
Aor51HI	AGCGCT	2 cut(s)	317, 360
AoxI	GGCC	9 cut(s)	830, 948, 1064, 1615, 2326, 2446, 2602, 2654, 2763
ApoI	RAATTY	3 cut(s)	550, 2185, 2592
ArsI	GACNNNNNNTTYG	2 cut(s)	380, 412
AseI	ATTAAT	1 cut(s)	2364
Asp700I	GAANNNNTTC	1 cut(s)	2529
AspLEI	GCGC	5 cut(s)	304, 318, 361, 2021, 2629
AspS9I	GGNCC	7 cut(s)	249, 948, 1025, 2326, 2447, 2603, 2763
AsuC2I	CCSGG	1 cut(s)	946
AsuHPI	GGTGA	5 cut(s)	1207, 1304, 1375, 2054, 2725
AvaI	CYCGRG	1 cut(s)	1699
AvaII	GGWCC	2 cut(s)	249, 1025
BalI	TGGCCA	1 cut(s)	832
BanI	GGYRCC	1 cut(s)	1125
BanII	GRGCYC	3 cut(s)	351, 1481, 1541
BauI	CACGAG	1 cut(s)	659
BbsI	GAAGAC	2 cut(s)	390, 2235
Bbv12I	GWGCWC	1 cut(s)	351
BbvCI	CCTCAGC	1 cut(s)	419
BcgI	CGANNNNNNTGC	2 cut(s)	2453, 2487
BciT130I	CCWGG	6 cut(s)	206, 230, 820, 1316, 1865, 2403
BciVI	GTATCC	1 cut(s)	2152
BclI	TGATCA	2 cut(s)	412, 2308
BcnI	CCSGG	1 cut(s)	946
BcoDI	GTCTC	6 cut(s)	215, 662, 1373, 2186, 2409, 2490
BfaI	CTAG	6 cut(s)	167, 264, 461, 615, 1973, 2597
BfmI	CTRYAG	2 cut(s)	1236, 2208
BfoI	RGCGCY	3 cut(s)	319, 362, 2022
BfuI	GTATCC	1 cut(s)	2152
BglI	GCCNNNNNGGC	1 cut(s)	2771
BlpI	GCTNAGC	1 cut(s)	312
Bme1390I	CCNGG	7 cut(s)	206, 230, 820, 946, 1316, 1865, 2403
Bme18I	GGWCC	2 cut(s)	249, 1025
BmeT110I	CYCGRG	1 cut(s)	1699
BmgBI	CACGTC	1 cut(s)	1353
BmgT120I	GGNCC	7 cut(s)	249, 948, 1025, 2326, 2447, 2603, 2763
BmiI	GGNNCC	9 cut(s)	269, 949, 1026, 1027, 1127, 1549, 1785, 1816, 2283
BmrFI	CCNGG	7 cut(s)	206, 230, 820, 946, 1316, 1865, 2403
BmrI	ACTGGG	1 cut(s)	2278
BmsI	GCATC	7 cut(s)	185, 1000, 1145, 1297, 1317, 1972, 2565
BmuI	ACTGGG	1 cut(s)	2278
BpiI	GAAGAC	2 cut(s)	390, 2235
BplI	GAGNNNNNCTC	4 cut(s)	273, 305, 1682, 1714
BpmI	CTGGAG	1 cut(s)	1362
Bpu10I	CCTNAGC	4 cut(s)	155, 345, 419, 1359
Bpu1102I	GCTNAGC	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	946
BsaI	GGTCTC	3 cut(s)	662, 2186, 2490
BsaJI	CCNNGG	4 cut(s)	204, 945, 1029, 1315
BsaWI	WCCGGW	2 cut(s)	925, 2195
Bsc4I	CCNNNNNNNGG	3 cut(s)	970, 1062, 2244
Bse118I	RCCGGY	1 cut(s)	2298
Bse1I	ACTGG	7 cut(s)	913, 964, 1120, 1186, 1264, 2238, 2273
Bse3DI	GCAATG	2 cut(s)	500, 1889
BseBI	CCWGG	6 cut(s)	206, 230, 820, 1316, 1865, 2403
BseDI	CCNNGG	4 cut(s)	204, 945, 1029, 1315
BseLI	CCNNNNNNNGG	3 cut(s)	970, 1062, 2244
BseMI	GCAATG	2 cut(s)	500, 1889
BseNI	ACTGG	7 cut(s)	913, 964, 1120, 1186, 1264, 2238, 2273
BseYI	CCCAGC	2 cut(s)	1013, 1283
BsgI	GTGCAG	3 cut(s)	2022, 2493, 2671
BshFI	GGCC	9 cut(s)	832, 950, 1066, 1617, 2328, 2448, 2604, 2656, 2765
BshNI	GGYRCC	1 cut(s)	1125
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	1699
BsiSI	CCGG	5 cut(s)	926, 945, 1618, 2196, 2299
BslFI	GGGAC	5 cut(s)	187, 1011, 1717, 1915, 2285
BslI	CCNNNNNNNGG	3 cut(s)	970, 1062, 2244
BsmAI	GTCTC	6 cut(s)	215, 662, 1373, 2186, 2409, 2490
BsmFI	GGGAC	5 cut(s)	187, 1011, 1717, 1915, 2285
BsmI	GAATGC	1 cut(s)	1877
BsnI	GGCC	9 cut(s)	832, 950, 1066, 1617, 2328, 2448, 2604, 2656, 2765
Bso31I	GGTCTC	3 cut(s)	662, 2186, 2490
BsoBI	CYCGRG	1 cut(s)	1699
Bsp1286I	GDGCHC	3 cut(s)	351, 1481, 1541
Bsp1407I	TGTACA	1 cut(s)	810
Bsp1720I	GCTNAGC	1 cut(s)	312
BspACI	CCGC	3 cut(s)	903, 1875, 2698
BspANI	GGCC	9 cut(s)	832, 950, 1066, 1617, 2328, 2448, 2604, 2656, 2765
BspHI	TCATGA	1 cut(s)	1393
BspLI	GGNNCC	9 cut(s)	269, 949, 1026, 1027, 1127, 1549, 1785, 1816, 2283
BspMAI	CTGCAG	1 cut(s)	2212
BspPI	GGATC	6 cut(s)	196, 1103, 1327, 1398, 1855, 1990
BspQI	GCTCTTC	2 cut(s)	53, 1469
BspT107I	GGYRCC	1 cut(s)	1125
BspTNI	GGTCTC	3 cut(s)	662, 2186, 2490
BsrDI	GCAATG	2 cut(s)	500, 1889
BsrFI	RCCGGY	1 cut(s)	2298
BsrGI	TGTACA	1 cut(s)	810
BsrI	ACTGG	7 cut(s)	913, 964, 1120, 1186, 1264, 2238, 2273
BssAI	RCCGGY	1 cut(s)	2298
BssECI	CCNNGG	4 cut(s)	204, 945, 1029, 1315
BssSI	CACGAG	1 cut(s)	659
BssT1I	CCWWGG	1 cut(s)	1029
Bst2BI	CACGAG	1 cut(s)	659
Bst2UI	CCWGG	6 cut(s)	206, 230, 820, 1316, 1865, 2403
Bst4CI	ACNGT	7 cut(s)	249, 470, 595, 670, 815, 1906, 2821
Bst6I	CTCTTC	7 cut(s)	53, 881, 1469, 2023, 2059, 2103, 2820
BstAPI	GCANNNNNTGC	3 cut(s)	1003, 2000, 2480
BstAUI	TGTACA	1 cut(s)	810
BstC8I	GCNNGC	8 cut(s)	261, 306, 1312, 1332, 2179, 2300, 2541, 2654
BstENI	CCTNNNNNAGG	1 cut(s)	1060
BstH2I	RGCGCY	3 cut(s)	319, 362, 2022
BstHHI	GCGC	5 cut(s)	304, 318, 361, 2021, 2629
BstMAI	GTCTC	6 cut(s)	215, 662, 1373, 2186, 2409, 2490
BstNI	CCWGG	6 cut(s)	206, 230, 820, 1316, 1865, 2403
BstNSI	RCATGY	2 cut(s)	1001, 2298
BstSCI	CCNGG	7 cut(s)	204, 228, 818, 944, 1314, 1863, 2401
BstSFI	CTRYAG	2 cut(s)	1236, 2208
BstV2I	GAAGAC	2 cut(s)	390, 2235
BstX2I	RGATCY	1 cut(s)	1860
BstXI	CCANNNNNNTGG	1 cut(s)	1036
BstYI	RGATCY	1 cut(s)	1860
BsuI	GTATCC	1 cut(s)	2152
BsuRI	GGCC	9 cut(s)	832, 950, 1066, 1617, 2328, 2448, 2604, 2656, 2765
BtrI	CACGTC	1 cut(s)	1353
BtsI	GCAGTG	2 cut(s)	297, 1989
Cac8I	GCNNGC	8 cut(s)	261, 306, 1312, 1332, 2179, 2300, 2541, 2654
CaiI	CAGNNNCTG	2 cut(s)	819, 2539
CciI	TCATGA	1 cut(s)	1393
CfoI	GCGC	5 cut(s)	304, 318, 361, 2021, 2629
Cfr10I	RCCGGY	1 cut(s)	2298
Cfr13I	GGNCC	7 cut(s)	249, 948, 1025, 2326, 2447, 2603, 2763
CseI	GACGC	1 cut(s)	1745
Csp6I	GTAC	8 cut(s)	382, 391, 433, 490, 811, 1425, 2435, 2461
CspCI	CAANNNNNGTGG	6 cut(s)	286, 321, 1102, 1137, 1417, 1452
CviQI	GTAC	8 cut(s)	382, 391, 433, 490, 811, 1425, 2435, 2461
EaeI	YGGCCR	2 cut(s)	830, 1615
Eam1104I	CTCTTC	7 cut(s)	53, 881, 1469, 2023, 2059, 2103, 2820
EarI	CTCTTC	7 cut(s)	53, 881, 1469, 2023, 2059, 2103, 2820
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	1029
Eco147I	AGGCCT	1 cut(s)	1066
Eco24I	GRGCYC	3 cut(s)	351, 1481, 1541
Eco31I	GGTCTC	3 cut(s)	662, 2186, 2490
Eco47I	GGWCC	2 cut(s)	249, 1025
Eco47III	AGCGCT	2 cut(s)	317, 360
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	5 cut(s)	125, 479, 1287, 1809, 2058
Eco88I	CYCGRG	1 cut(s)	1699
EcoICRI	GAGCTC	1 cut(s)	349
EcoNI	CCTNNNNNAGG	1 cut(s)	1060
EcoO109I	RGGNCCY	1 cut(s)	1025
EcoRI	GAATTC	1 cut(s)	2592
EcoRII	CCWGG	6 cut(s)	204, 228, 818, 1314, 1863, 2401
EcoT14I	CCWWGG	1 cut(s)	1029
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	3 cut(s)	351, 1481, 1541
ErhI	CCWWGG	1 cut(s)	1029
FaqI	GGGAC	5 cut(s)	187, 1011, 1717, 1915, 2285
FauI	CCCGC	1 cut(s)	2691
FbaI	TGATCA	2 cut(s)	412, 2308
FblI	GTMKAC	2 cut(s)	1178, 2092
FriOI	GRGCYC	3 cut(s)	351, 1481, 1541
FspBI	CTAG	6 cut(s)	167, 264, 461, 615, 1973, 2597
FspI	TGCGCA	1 cut(s)	2628
GlaI	GCGC	5 cut(s)	303, 317, 360, 2020, 2628
GsaI	CCCAGC	2 cut(s)	1017, 1287
GsuI	CTGGAG	1 cut(s)	1362
HaeII	RGCGCY	3 cut(s)	319, 362, 2022
HaeIII	GGCC	9 cut(s)	832, 950, 1066, 1617, 2328, 2448, 2604, 2656, 2765
HapII	CCGG	5 cut(s)	926, 945, 1618, 2196, 2299
HgaI	GACGC	1 cut(s)	1745
HhaI	GCGC	5 cut(s)	304, 318, 361, 2021, 2629
Hin6I	GCGC	5 cut(s)	302, 316, 359, 2019, 2627
HinP1I	GCGC	5 cut(s)	302, 316, 359, 2019, 2627
HincII	GTYRAC	2 cut(s)	738, 1257
HindII	GTYRAC	2 cut(s)	738, 1257
HpaI	GTTAAC	1 cut(s)	738
HpaII	CCGG	5 cut(s)	926, 945, 1618, 2196, 2299
HphI	GGTGA	5 cut(s)	1207, 1304, 1375, 2054, 2725
Hpy166II	GTNNAC	7 cut(s)	666, 738, 811, 1179, 1257, 2093, 2437
Hpy8I	GTNNAC	7 cut(s)	666, 738, 811, 1179, 1257, 2093, 2437
HpyCH4III	ACNGT	7 cut(s)	249, 470, 595, 670, 815, 1906, 2821
HpyCH4IV	ACGT	1 cut(s)	1352
HpySE526I	ACGT	1 cut(s)	1352
HspAI	GCGC	5 cut(s)	302, 316, 359, 2019, 2627
KflI	GGGWCCC	1 cut(s)	1025
KroI	GCCGGC	1 cut(s)	2298
KroNI	GCCGGC	1 cut(s)	2300
Ksp22I	TGATCA	2 cut(s)	412, 2308
KspAI	GTTAAC	1 cut(s)	738
LguI	GCTCTTC	2 cut(s)	53, 1469
LmnI	GCTCC	4 cut(s)	273, 854, 1343, 1820
LweI	GCATC	7 cut(s)	185, 1000, 1145, 1297, 1317, 1972, 2565
MaeI	CTAG	6 cut(s)	167, 264, 461, 615, 1973, 2597
MaeII	ACGT	1 cut(s)	1352
MaeIII	GTNAC	8 cut(s)	940, 1078, 1166, 1417, 1934, 2374, 2710, 2857
MfeI	CAATTG	1 cut(s)	991
MflI	RGATCY	1 cut(s)	1860
MhlI	GDGCHC	3 cut(s)	351, 1481, 1541
MlsI	TGGCCA	1 cut(s)	832
MluNI	TGGCCA	1 cut(s)	832
MlyI	GAGTC	7 cut(s)	335, 1508, 1709, 1763, 2126, 2224, 2422
Mox20I	TGGCCA	1 cut(s)	832
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	2298
MroXI	GAANNNNTTC	1 cut(s)	2529
MscI	TGGCCA	1 cut(s)	832
MseI	TTAA	8 cut(s)	198, 443, 737, 825, 1137, 2316, 2364, 2393
MslI	CAYNNNNRTG	1 cut(s)	2442
Msp20I	TGGCCA	1 cut(s)	832
MspA1I	CMGCKG	3 cut(s)	311, 418, 2477
MspI	CCGG	5 cut(s)	926, 945, 1618, 2196, 2299
MspR9I	CCNGG	7 cut(s)	206, 230, 820, 946, 1316, 1865, 2403
MunI	CAATTG	1 cut(s)	991
Mva1269I	GAATGC	1 cut(s)	1877
MvaI	CCWGG	6 cut(s)	206, 230, 820, 1316, 1865, 2403
NaeI	GCCGGC	1 cut(s)	2300
NciI	CCSGG	1 cut(s)	946
NgoMIV	GCCGGC	1 cut(s)	2298
NlaIV	GGNNCC	9 cut(s)	269, 949, 1026, 1027, 1127, 1549, 1785, 1816, 2283
NmeAIII	GCCGAG	1 cut(s)	1939
NmuCI	GTSAC	5 cut(s)	1078, 1166, 1934, 2374, 2857
NsbI	TGCGCA	1 cut(s)	2628
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	1001, 2298
PagI	TCATGA	1 cut(s)	1393
PceI	AGGCCT	1 cut(s)	1066
PciSI	GCTCTTC	2 cut(s)	53, 1469
PctI	GAATGC	1 cut(s)	1877
PdiI	GCCGGC	1 cut(s)	2300
PdmI	GAANNNNTTC	1 cut(s)	2529
PflFI	GACNNNGTC	1 cut(s)	1772
PflMI	CCANNNNNTGG	1 cut(s)	970
PfoI	TCCNGGA	1 cut(s)	1863
PleI	GAGTC	7 cut(s)	334, 1507, 1709, 1763, 2125, 2223, 2422
PpsI	GAGTC	7 cut(s)	334, 1507, 1709, 1763, 2125, 2223, 2422
PpuMI	RGGWCCY	1 cut(s)	1025
PshBI	ATTAAT	1 cut(s)	2364
PsiI	TTATAA	1 cut(s)	2754
Psp124BI	GAGCTC	1 cut(s)	351
Psp5II	RGGWCCY	1 cut(s)	1025
Psp6I	CCWGG	6 cut(s)	204, 228, 818, 1314, 1863, 2401
PspFI	CCCAGC	2 cut(s)	1013, 1283
PspGI	CCWGG	6 cut(s)	204, 228, 818, 1314, 1863, 2401
PspN4I	GGNNCC	9 cut(s)	269, 949, 1026, 1027, 1127, 1549, 1785, 1816, 2283
PspPI	GGNCC	7 cut(s)	249, 948, 1025, 2326, 2447, 2603, 2763
PspPPI	RGGWCCY	1 cut(s)	1025
PstI	CTGCAG	1 cut(s)	2212
PstNI	CAGNNNCTG	2 cut(s)	819, 2539
PsuI	RGATCY	1 cut(s)	1860
PsyI	GACNNNGTC	1 cut(s)	1772
PvuII	CAGCTG	3 cut(s)	311, 418, 2477
RsaI	GTAC	8 cut(s)	383, 392, 434, 491, 812, 1426, 2436, 2462
RsaNI	GTAC	8 cut(s)	382, 391, 433, 490, 811, 1425, 2435, 2461
RseI	CAYNNNNRTG	1 cut(s)	2442
SacI	GAGCTC	1 cut(s)	351
SapI	GCTCTTC	2 cut(s)	53, 1469
SaqAI	TTAA	8 cut(s)	198, 443, 737, 825, 1137, 2316, 2364, 2393
Sau96I	GGNCC	7 cut(s)	249, 948, 1025, 2326, 2447, 2603, 2763
SchI	GAGTC	7 cut(s)	335, 1508, 1709, 1763, 2126, 2224, 2422
ScrFI	CCNGG	7 cut(s)	206, 230, 820, 946, 1316, 1865, 2403
SduI	GDGCHC	3 cut(s)	351, 1481, 1541
SfaNI	GCATC	7 cut(s)	185, 1000, 1145, 1297, 1317, 1972, 2565
SfcI	CTRYAG	2 cut(s)	1236, 2208
SinI	GGWCC	2 cut(s)	249, 1025
SmiMI	CAYNNNNRTG	1 cut(s)	2442
SseBI	AGGCCT	1 cut(s)	1066
SsiI	CCGC	3 cut(s)	903, 1875, 2698
SspMI	CTAG	6 cut(s)	167, 264, 461, 615, 1973, 2597
SstI	GAGCTC	1 cut(s)	351
StuI	AGGCCT	1 cut(s)	1066
StyD4I	CCNGG	7 cut(s)	204, 228, 818, 944, 1314, 1863, 2401
StyI	CCWWGG	1 cut(s)	1029
TaaI	ACNGT	7 cut(s)	249, 470, 595, 670, 815, 1906, 2821
TaiI	ACGT	1 cut(s)	1355
TaqI	TCGA	5 cut(s)	98, 119, 324, 875, 2347
TaqII	GACCGA	1 cut(s)	2514
TatI	WGTACW	2 cut(s)	390, 810
TauI	GCSGC	1 cut(s)	1878
Tru1I	TTAA	8 cut(s)	198, 443, 737, 825, 1137, 2316, 2364, 2393
Tru9I	TTAA	8 cut(s)	198, 443, 737, 825, 1137, 2316, 2364, 2393
TseFI	GTSAC	5 cut(s)	1078, 1166, 1934, 2374, 2857
Tsp45I	GTSAC	5 cut(s)	1078, 1166, 1934, 2374, 2857
TspDTI	ATGAA	8 cut(s)	249, 369, 707, 1290, 1487, 1878, 1937, 2241
Tth111I	GACNNNGTC	1 cut(s)	1772
Van91I	CCANNNNNTGG	1 cut(s)	970
VpaK11BI	GGWCC	2 cut(s)	249, 1025
VspI	ATTAAT	1 cut(s)	2364
XagI	CCTNNNNNAGG	1 cut(s)	1060
XapI	RAATTY	3 cut(s)	550, 2185, 2592
XbaI	TCTAGA	2 cut(s)	166, 2596
XceI	RCATGY	2 cut(s)	1001, 2298
XmiI	GTMKAC	2 cut(s)	1178, 2092
XmnI	GAANNNNTTC	1 cut(s)	2529
XspI	CTAG	6 cut(s)	167, 264, 461, 615, 1973, 2597
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.