Rorug02G0116700
ERF Family

superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004440
Physical Location & Seq
Reverse (-)
9897958 .. 9901112
3155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0116700.1

Sequence Viewer

Length: 723 bp
ATGGCGGATTCTCCTCGCAGAAGGTATTCACGATCCCCTTCTCCATGGAGAGCTCAGTCTCGGTCCAGATCCAGGTCCAGGTCTGTGTCCAGGCCTAGGTCAAGATCAAGATCCTGGTCTAGGCCGAGGCGCAGGTCTAGAAGTCGTGGCAGGTCAAGATCCAGAAGTCGTGGAAGGGATGCTATTGTAAATCCTGGAAATACACTCTATGTGACTGGCCTATCTCAAAGGGTCTCTGAAAAGGACGTTGAAAGGCACTTTTCAAAGGAGGGAAAGGTAGCTTCATGTTTTCTTGTTGTTGAACCTCGTTCGCGAATTTCCCGTGGTTTTGCCTTCGTTACAATGGATTCTAATGAAGATGCAGAACGGTGCATTAAACATCTCAACCAGTCAGTTCTGGAAGGGCGATACATAACTGTGGAAAGGTCCCGGAGGAAGCGACCAAGGACTCCGACACCTGGGCATTATCTGGGATTGAAAAATACTAGGGACTATGCCCGTGGTGACCGTGACCGTGACCGTGACCATGATCGTGGGAGGTACCGTGGGGGCTCAGGTCGAGATGACTATGGATATAGGAGGTCTCCTAGACGCTCACCCTACAGAGGTGGTCGCGATTATTCTCCTAGGGGCTCATCTTATGGTGGTGGAAGATCAAGAAGGGAGAGGTCTTATTCACCCTATGGCAGTCCAGAAAGGAAATACACTCGTGGCTCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00790 map00790
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

28.06

Weight (kDa)

11.66

Isoelectric Point (pI)

99.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 69 - 138 5.8e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 123, 141
Acc65I GGTACC 1 cut(s) 540
AccB1I GGYRCC 1 cut(s) 540
AccII CGCG 2 cut(s) 313, 615
AciI CCGC 1 cut(s) 5
AclWI GGATC 4 cut(s) 27, 63, 105, 153
AcsI RAATTY 1 cut(s) 315
AfaI GTAC 1 cut(s) 542
AfiI CCNNNNNNNGG 6 cut(s) 72, 78, 96, 120, 458, 605
AgsI TTSAA 4 cut(s) 251, 264, 302, 478
AjnI CCWGG 6 cut(s) 71, 77, 89, 113, 193, 457
AluBI AGCT 2 cut(s) 53, 281
AluI AGCT 2 cut(s) 53, 281
Alw21I GWGCWC 1 cut(s) 55
Alw26I GTCTC 3 cut(s) 63, 238, 588
AlwI GGATC 4 cut(s) 27, 63, 105, 153
AoxI GGCC 3 cut(s) 92, 122, 217
ApoI RAATTY 1 cut(s) 315
Asp700I GAANNNNTTC 1 cut(s) 25
Asp718I GGTACC 1 cut(s) 540
AspA2I CCTAGG 2 cut(s) 95, 626
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 3 cut(s) 63, 75, 426
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 3 cut(s) 515, 588, 669
AvaII GGWCC 3 cut(s) 63, 75, 426
AvrII CCTAGG 2 cut(s) 95, 626
BanI GGYRCC 1 cut(s) 540
BanII GRGCYC 3 cut(s) 55, 554, 635
BauI CACGAG 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 55
BciT130I CCWGG 6 cut(s) 73, 79, 91, 115, 195, 459
BcnI CCSGG 1 cut(s) 430
BcoDI GTCTC 3 cut(s) 63, 238, 588
BfaI CTAG 7 cut(s) 96, 120, 138, 486, 588, 627, 717
BfmI CTRYAG 1 cut(s) 601
BfuAI ACCTGC 2 cut(s) 123, 141
BlnI CCTAGG 2 cut(s) 95, 626
Bme1390I CCNGG 7 cut(s) 73, 79, 91, 115, 195, 430, 459
Bme18I GGWCC 3 cut(s) 63, 75, 426
BmgT120I GGNCC 3 cut(s) 63, 75, 426
BmiI GGNNCC 2 cut(s) 428, 542
BmrFI CCNGG 7 cut(s) 73, 79, 91, 115, 195, 430, 459
BmsI GCATC 2 cut(s) 169, 349
Bpu10I CCTNAGC 1 cut(s) 553
BpuMI CCSGG 1 cut(s) 430
BsaBI GATNNNNATC 1 cut(s) 109
BsaI GGTCTC 2 cut(s) 238, 588
BsaJI CCNNGG 9 cut(s) 44, 95, 125, 322, 443, 458, 499, 544, 626
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bsc4I CCNNNNNNNGG 6 cut(s) 72, 78, 96, 120, 458, 605
Bse1I ACTGG 2 cut(s) 220, 388
Bse8I GATNNNNATC 1 cut(s) 109
BseBI CCWGG 6 cut(s) 73, 79, 91, 115, 195, 459
BseDI CCNNGG 9 cut(s) 44, 95, 125, 322, 443, 458, 499, 544, 626
BseGI GGATG 1 cut(s) 184
BseJI GATNNNNATC 1 cut(s) 109
BseLI CCNNNNNNNGG 6 cut(s) 72, 78, 96, 120, 458, 605
BseMII CTCAG 2 cut(s) 68, 567
BseNI ACTGG 2 cut(s) 220, 388
Bsh1236I CGCG 2 cut(s) 313, 615
BshFI GGCC 3 cut(s) 94, 124, 219
BshNI GGYRCC 1 cut(s) 540
BsiHKAI GWGCWC 1 cut(s) 55
BsiSI CCGG 1 cut(s) 430
BslFI GGGAC 2 cut(s) 412, 503
BslI CCNNNNNNNGG 6 cut(s) 72, 78, 96, 120, 458, 605
BsmAI GTCTC 3 cut(s) 63, 238, 588
BsmFI GGGAC 2 cut(s) 412, 503
BsnI GGCC 3 cut(s) 94, 124, 219
Bso31I GGTCTC 2 cut(s) 238, 588
Bsp1286I GDGCHC 3 cut(s) 55, 554, 635
Bsp143I GATC 7 cut(s) 32, 68, 104, 110, 158, 529, 653
Bsp19I CCATGG 1 cut(s) 44
Bsp68I TCGCGA 2 cut(s) 313, 615
BspACI CCGC 1 cut(s) 5
BspANI GGCC 3 cut(s) 94, 124, 219
BspCNI CTCAG 2 cut(s) 67, 566
BspFNI CGCG 2 cut(s) 313, 615
BspLI GGNNCC 2 cut(s) 428, 542
BspMI ACCTGC 2 cut(s) 123, 141
BspPI GGATC 4 cut(s) 27, 63, 105, 153
BspT107I GGYRCC 1 cut(s) 540
BspTNI GGTCTC 2 cut(s) 238, 588
BsrI ACTGG 2 cut(s) 220, 388
BssECI CCNNGG 9 cut(s) 44, 95, 125, 322, 443, 458, 499, 544, 626
BssMI GATC 7 cut(s) 32, 68, 104, 110, 158, 529, 653
BssSI CACGAG 1 cut(s) 708
BssT1I CCWWGG 4 cut(s) 44, 95, 443, 626
Bst2BI CACGAG 1 cut(s) 708
Bst2UI CCWGG 6 cut(s) 73, 79, 91, 115, 195, 459
Bst4CI ACNGT 6 cut(s) 369, 418, 509, 515, 521, 545
BstDEI CTNAG 2 cut(s) 54, 553
BstDSI CCRYGG 4 cut(s) 44, 322, 499, 544
BstEII GGTNACC 1 cut(s) 503
BstENI CCTNNNNNAGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 184
BstFNI CGCG 2 cut(s) 313, 615
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 7 cut(s) 35, 71, 107, 113, 161, 532, 656
BstMAI GTCTC 3 cut(s) 63, 238, 588
BstMBI GATC 7 cut(s) 32, 68, 104, 110, 158, 529, 653
BstNI CCWGG 6 cut(s) 73, 79, 91, 115, 195, 459
BstPI GGTNACC 1 cut(s) 503
BstSCI CCNGG 7 cut(s) 71, 77, 89, 113, 193, 428, 457
BstSFI CTRYAG 1 cut(s) 601
BstUI CGCG 2 cut(s) 313, 615
BstX2I RGATCY 3 cut(s) 68, 110, 158
BstXI CCANNNNNNTGG 1 cut(s) 533
BstYI RGATCY 3 cut(s) 68, 110, 158
BsuRI GGCC 3 cut(s) 94, 124, 219
BtgI CCRYGG 4 cut(s) 44, 322, 499, 544
BtsCI GGATG 1 cut(s) 184
BtuMI TCGCGA 2 cut(s) 313, 615
BveI ACCTGC 2 cut(s) 123, 141
CfoI GCGC 1 cut(s) 132
Cfr13I GGNCC 3 cut(s) 63, 75, 426
CseI GACGC 1 cut(s) 600
Csp6I GTAC 1 cut(s) 541
CviAII CATG 3 cut(s) 45, 285, 527
CviJI RGCY 8 cut(s) 53, 94, 124, 219, 281, 552, 633, 714
CviKI_1 RGCY 8 cut(s) 53, 94, 124, 219, 281, 552, 633, 714
CviQI GTAC 1 cut(s) 541
DdeI CTNAG 2 cut(s) 54, 553
DpnI GATC 7 cut(s) 34, 70, 106, 112, 160, 531, 655
DpnII GATC 7 cut(s) 32, 68, 104, 110, 158, 529, 653
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 53
Eco130I CCWWGG 4 cut(s) 44, 95, 443, 626
Eco147I AGGCCT 1 cut(s) 94
Eco24I GRGCYC 3 cut(s) 55, 554, 635
Eco31I GGTCTC 2 cut(s) 238, 588
Eco47I GGWCC 3 cut(s) 63, 75, 426
Eco53kI GAGCTC 1 cut(s) 53
Eco91I GGTNACC 1 cut(s) 503
EcoICRI GAGCTC 1 cut(s) 53
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 426
EcoO65I GGTNACC 1 cut(s) 503
EcoRII CCWGG 6 cut(s) 71, 77, 89, 113, 193, 457
EcoT14I CCWWGG 4 cut(s) 44, 95, 443, 626
EcoT38I GRGCYC 3 cut(s) 55, 554, 635
ErhI CCWWGG 4 cut(s) 44, 95, 443, 626
FaeI CATG 3 cut(s) 48, 288, 530
FaqI GGGAC 2 cut(s) 412, 503
FatI CATG 3 cut(s) 44, 284, 526
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 3 cut(s) 55, 554, 635
FspBI CTAG 7 cut(s) 96, 120, 138, 486, 588, 627, 717
GlaI GCGC 1 cut(s) 131
HaeIII GGCC 3 cut(s) 94, 124, 219
HapII CCGG 1 cut(s) 430
HgaI GACGC 1 cut(s) 600
HhaI GCGC 1 cut(s) 132
Hin1II CATG 3 cut(s) 48, 288, 530
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HinfI GANTC 3 cut(s) 8, 347, 448
HpaII CCGG 1 cut(s) 430
HphI GGTGA 3 cut(s) 515, 588, 669
Hpy188I TCNGA 2 cut(s) 238, 453
HpyAV CCTTC 6 cut(s) 15, 48, 168, 343, 395, 654
HpyCH4III ACNGT 6 cut(s) 369, 418, 509, 515, 521, 545
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 2 cut(s) 362, 372
HpyF3I CTNAG 2 cut(s) 54, 553
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 3 cut(s) 48, 288, 530
HspAI GCGC 1 cut(s) 130
KpnI GGTACC 1 cut(s) 544
Kzo9I GATC 7 cut(s) 32, 68, 104, 110, 158, 529, 653
LweI GCATC 2 cut(s) 169, 349
MaeI CTAG 7 cut(s) 96, 120, 138, 486, 588, 627, 717
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 6 cut(s) 211, 337, 503, 509, 515, 521
MalI GATC 7 cut(s) 34, 70, 106, 112, 160, 531, 655
MboI GATC 7 cut(s) 32, 68, 104, 110, 158, 529, 653
MboII GAAGA 2 cut(s) 368, 663
MflI RGATCY 3 cut(s) 68, 110, 158
MhlI GDGCHC 3 cut(s) 55, 554, 635
MluCI AATT 1 cut(s) 315
MlyI GAGTC 1 cut(s) 442
MmeI TCCRAC 1 cut(s) 476
MnlI CCTC 9 cut(s) 24, 120, 262, 315, 426, 531, 573, 599, 660
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 2 cut(s) 416, 531
MspI CCGG 1 cut(s) 430
MspR9I CCNGG 7 cut(s) 73, 79, 91, 115, 195, 430, 459
MvaI CCWGG 6 cut(s) 73, 79, 91, 115, 195, 459
MvnI CGCG 2 cut(s) 313, 615
NciI CCSGG 1 cut(s) 430
NcoI CCATGG 1 cut(s) 44
NdeII GATC 7 cut(s) 32, 68, 104, 110, 158, 529, 653
NlaIII CATG 3 cut(s) 48, 288, 530
NlaIV GGNNCC 2 cut(s) 428, 542
NmeAIII GCCGAG 1 cut(s) 150
NmuCI GTSAC 5 cut(s) 211, 503, 509, 515, 521
NruI TCGCGA 2 cut(s) 313, 615
PceI AGGCCT 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 25
PfeI GAWTC 2 cut(s) 8, 347
PfoI TCCNGGA 2 cut(s) 193, 428
PleI GAGTC 1 cut(s) 442
PpsI GAGTC 1 cut(s) 442
PpuMI RGGWCCY 1 cut(s) 426
Psp124BI GAGCTC 1 cut(s) 55
Psp5II RGGWCCY 1 cut(s) 426
Psp6I CCWGG 6 cut(s) 71, 77, 89, 113, 193, 457
PspEI GGTNACC 1 cut(s) 503
PspGI CCWGG 6 cut(s) 71, 77, 89, 113, 193, 457
PspN4I GGNNCC 2 cut(s) 428, 542
PspPI GGNCC 3 cut(s) 63, 75, 426
PspPPI RGGWCCY 1 cut(s) 426
PsuI RGATCY 3 cut(s) 68, 110, 158
RruI TCGCGA 2 cut(s) 313, 615
RsaI GTAC 1 cut(s) 542
RsaNI GTAC 1 cut(s) 541
RseI CAYNNNNRTG 2 cut(s) 416, 531
SacI GAGCTC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 375
Sau3AI GATC 7 cut(s) 32, 68, 104, 110, 158, 529, 653
Sau96I GGNCC 3 cut(s) 63, 75, 426
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 7 cut(s) 73, 79, 91, 115, 195, 430, 459
SduI GDGCHC 3 cut(s) 55, 554, 635
SfaNI GCATC 2 cut(s) 169, 349
SfcI CTRYAG 1 cut(s) 601
SinI GGWCC 3 cut(s) 63, 75, 426
SmiMI CAYNNNNRTG 2 cut(s) 416, 531
Sse9I AATT 1 cut(s) 315
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 1 cut(s) 5
SspMI CTAG 7 cut(s) 96, 120, 138, 486, 588, 627, 717
SstI GAGCTC 1 cut(s) 55
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 7 cut(s) 71, 77, 89, 113, 193, 428, 457
StyI CCWWGG 4 cut(s) 44, 95, 443, 626
TaaI ACNGT 6 cut(s) 369, 418, 509, 515, 521, 545
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 559
TaqII GACCGA 1 cut(s) 51
TasI AATT 1 cut(s) 315
TfiI GAWTC 2 cut(s) 8, 347
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TseFI GTSAC 5 cut(s) 211, 503, 509, 515, 521
Tsp45I GTSAC 5 cut(s) 211, 503, 509, 515, 521
TspDTI ATGAA 2 cut(s) 273, 369
VpaK11BI GGWCC 3 cut(s) 63, 75, 426
XagI CCTNNNNNAGG 1 cut(s) 118
XapI RAATTY 1 cut(s) 315
XbaI TCTAGA 2 cut(s) 137, 716
XmaJI CCTAGG 2 cut(s) 95, 626
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 7 cut(s) 96, 120, 138, 486, 588, 627, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.