Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003067

Physical Location & Seq

Genomic Coordinates Reverse (-)

45078124 .. 45080266

Gene Structure 2143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1370800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCTGAATTTATGTGGAGAACTGATGAGCATAATGTTCAGCAGAGTGGATTGGCTGATACATCATCTGAACTCATGCAGTCATCTGGCTACTATCCGAACTTTGATATGTTGTCTGATAAGGGTGCAAACGGAGCTTTAAGTGTAAATGAAAAGTTTGACAACATGTCAGGTTTGGAGGGATTGGGACCGGGTCAGTTTGATTATAATATCCCGACAGTGCAAGCAACCTCACATACAAAGGAATCAAAAGTGTTGTCATGTGATGGAGAGCTGGAACAAGGTTTCAGTTCATCTGATTGGCTTGAAAAGGAATCTTTGCCCTCAATGCCAAACATCACAAGTAGGCATGAGATTATCACCTGTGTCTGGTGCAGAAATGAGTTTCATCATGAGGTCTATGAAAGAACACAACCTGGTTCTGTCGGTTTGATGTGTGCGACCTGCCAGGCCAATTTCTCAGGCGATTTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook MBD

Protein Analysis

159

Amino Acids

17.58

Weight (kDa)

4.49

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120
malus_domestica	MD00G1009700.v1.1 MD08G1184300.v1.1 MD15G1370800.v1.1
prunus_persica	Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1
pyrus_communis	pycom08g15800
rosa_chinensis	RchiOBHm_Chr7g0238671 RchiOBHm_Chr7g0243951 RchiOBHm_Chr7g0243961
rosa_laevigata	RLG00000000820
rosa_multiflora	Rmu_sc0006110.1_g000008
rosa_roxburghii	Rroxscaffold_3G00221630
rosa_rugosa	Rorug07G0322800
rosa_samantha	Rh7AG477200 Rh7BG448500 Rh7CG495300 Rh7DG462200
rosa_wichuraiana	Rw7G039830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	369
AflIII	ACRYGT	1 cut(s)	165
AgsI	TTSAA	1 cut(s)	308
AhdI	GACNNNNNGTC	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	415, 447
AluBI	AGCT	2 cut(s)	137, 274
AluI	AGCT	2 cut(s)	137, 274
AoxI	GGCC	1 cut(s)	450
ApoI	RAATTY	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	188
BccI	CCATC	1 cut(s)	260
BciT130I	CCWGG	2 cut(s)	417, 449
BcnI	CCSGG	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	452
Bme1390I	CCNGG	3 cut(s)	192, 417, 449
Bme18I	GGWCC	1 cut(s)	188
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	3 cut(s)	192, 417, 449
BpuMI	CCSGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	417, 449
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	474
BsgI	GTGCAG	1 cut(s)	394
BshFI	GGCC	1 cut(s)	452
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	452
BspANI	GGCC	1 cut(s)	452
BspCNI	CTCAG	1 cut(s)	473
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	189
BspMI	ACCTGC	1 cut(s)	452
Bst2UI	CCWGG	2 cut(s)	417, 449
Bst4CI	ACNGT	1 cut(s)	220
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	460
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 328
BstNI	CCWGG	2 cut(s)	417, 449
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	3 cut(s)	190, 415, 447
BsuRI	GGCC	1 cut(s)	452
BtsIMutI	CAGTG	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	452
Cac8I	GCNNGC	1 cut(s)	225
CciI	TCATGA	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	188
CsiI	ACCWGGT	1 cut(s)	415
CviAII	CATG	5 cut(s)	76, 166, 261, 350, 392
CviJI	RGCY	7 cut(s)	5, 56, 90, 137, 274, 304, 452
CviKI_1	RGCY	7 cut(s)	5, 56, 90, 137, 274, 304, 452
DdeI	CTNAG	1 cut(s)	460
DriI	GACNNNNNGTC	1 cut(s)	166
Eam1105I	GACNNNNNGTC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	415, 447
FaeI	CATG	5 cut(s)	79, 169, 264, 353, 395
FaqI	GGGAC	1 cut(s)	201
FatI	CATG	5 cut(s)	75, 165, 260, 349, 391
HaeIII	GGCC	1 cut(s)	452
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	5 cut(s)	79, 169, 264, 353, 395
HinfI	GANTC	2 cut(s)	245, 314
HpaII	CCGG	1 cut(s)	191
HphI	GGTGA	1 cut(s)	352
Hpy188I	TCNGA	4 cut(s)	70, 99, 118, 298
Hpy188III	TCNNGA	2 cut(s)	214, 392
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	4 cut(s)	79, 128, 223, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 328
HpyF3I	CTNAG	1 cut(s)	460
Hsp92II	CATG	5 cut(s)	79, 169, 264, 353, 395
LmnI	GCTCC	1 cut(s)	134
MabI	ACCWGGT	1 cut(s)	415
MluCI	AATT	2 cut(s)	8, 454
MnlI	CCTC	4 cut(s)	172, 241, 334, 388
MseI	TTAA	1 cut(s)	140
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	3 cut(s)	192, 417, 449
MvaI	CCWGG	2 cut(s)	417, 449
MwoI	GCNNNNNNNGC	2 cut(s)	134, 328
NciI	CCSGG	1 cut(s)	192
NlaIII	CATG	5 cut(s)	79, 169, 264, 353, 395
NlaIV	GGNNCC	1 cut(s)	189
NspI	RCATGY	1 cut(s)	169
PagI	TCATGA	1 cut(s)	391
PciI	ACATGT	1 cut(s)	165
PfeI	GAWTC	2 cut(s)	245, 314
PflFI	GACNNNGTC	1 cut(s)	192
PscI	ACATGT	1 cut(s)	165
PsiI	TTATAA	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	415, 447
PspGI	CCWGG	2 cut(s)	415, 447
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	188
PsyI	GACNNNGTC	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	140
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	3 cut(s)	192, 417, 449
SetI	ASST	9 cut(s)	139, 175, 233, 276, 286, 365, 399, 418, 446
SexAI	ACCWGGT	1 cut(s)	415
SinI	GGWCC	1 cut(s)	188
Sse9I	AATT	2 cut(s)	8, 454
StyD4I	CCNGG	3 cut(s)	190, 415, 447
TaaI	ACNGT	1 cut(s)	220
TasI	AATT	2 cut(s)	8, 454
TfiI	GAWTC	2 cut(s)	245, 314
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	1 cut(s)	225
TspDTI	ATGAA	4 cut(s)	165, 282, 377, 417
TspGWI	ACGGA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	225
Tth111I	GACNNNGTC	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	8
XceI	RCATGY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.