Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006110.1

Orthogroup ID

OG0003067

Physical Location & Seq

Genomic Coordinates Reverse (-)

29651 .. 37591

Gene Structure 7941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006110.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3756 bp

atggccaccgtcgacgaccaccacctcctccacctggactccgtccccgtcgtcgacctccgcctcctcacccaatccgagctctactccctctccctctcctcctcctcctcctccgcatctcaccgcttcgacgacgacgttttgatccccaaaatcgaccgctccgtcttcaacgaatccgccggcagccgcaaacagacctactcccgcctccgcctcgcccctcgcaactcccaattcgcctcctcctccaattccaaatctgccctccctccctcccacctcctcctctcccagccgctcgattgcgagagccgccagattatctcgctcctcaagcagctcttcccctccgacgatcaaaacgacgacgtcctcctcccccaaacggccaccacccccacccccgtgcagtacaaaatccccgccgcgccgacgccttccttcagcgcctcgcccggtgccgtttccggcgtcgattcctcgctcgggaaacggaagcgcggccggccgcggaaggattccaacgccgtgattgcgaaaccggagcccgccgctgtgccgctcagctctgctgcgttggctggcggtgccggcgaggctgaggatggcaatgccggtgttttgattgagaagcgtgacggtggagctacggcggttgggacttttgtgctgaatagcgaaggacagcttgtgccgagtagcgccgggaagaggaagcgagggcggccgcggaaggatgagattagggttagggatgagagtacagtggtggcttcggtgaggaaaccgctgagagtgaagaaggaggtggatggagagatggtgatggtgaacgtgaacgacgtcgttgtggatttggatgcattggccaatgcggacagtgtgtttggggaggagttgaggaagaggacagaggggttggagactgaggcgcagttgttagggtttctggaagggttggagggggactggtccagtgctaggaagaagaggaagattgtgcaggcgagtgagctcggcgacttgttgccgaagtggtggaagatcatgctgtctctcaagaggaatggaggtgataaatggattgtgtgtaggcggtttataagccctaatgggttggagtttgtgtcgtgcaaggaagtttcttcatacttgcactcttattttggacttggaagccagtcgaattctgttcataccgatgggaatattcaggtttctaataaaatggttttgggagatggaatgcaacatgatactagttttacctataaagataacaacaatggtcatgagcttcttcgctgctccccaatgcccattacctctatgaacagctatgtcaagagcattgaagcatcaggagaagtaatgggtatgcgaaaaaaattggatcctgtaaagaatggtcgtttggggacatccttgaaaattcaagaatcagttgagatagatggggaacaaacttctgatatgatagccaactatgatttgagttctgatttttctctgggtaaggtaaatgatatcatggcaaaatattttggcatatccaatgatgaatcgaattcaatgtcctgtgaggagcaagcgatgatggctgacaaaacaatttgcttttctgatggattaaatgatggtatcagggttgccatcagctcagttgatgtgcccaaagtggagatagacagtgcttcaaatgacatgggaaaagaacatggagctgacaatcttgataatcaccaatcaactagcactgtagatgatatgaaaattgatgatgtggataattgtaggaatggcaggtcaatatctggtattagtgagagtcgcattggacctgagactgcatataatgttgaccaacaaagtacttcagaagcctgctcgcttgttccttcaattgtgatggagtctcttcatgaaagaggttcggacagtggtttatatagtacagccactgatgagaaaacatgtgttgtcagtaataacttcaataacgattcattccccacattttatgagcccagatttgatgatattggcctatctgggagtaatgagaagacattttgttttggcagcaatcatgctatgccagatgtagattccatggagatcagtgtgcgaattcgaagtactggaagctattcaaatgttccacctctggatggacatagttgtattattaatgcaacgaatcccagttgcacagtggaagaactcttgcaggacaagaggttagcaagcaacgcatttaattcatttgttaataagcagacccctggtaatctaaataagggtgctattcatacagcagaagggcataaagtcgagcgtgccaaaaattatgacaatagtgagttaagtgttaattttggtagcagggccactggaactaatgcagatactacctcttgcattgaccaggaaagaagctctaaaggctattcacttgcttcatatgcaaacgagcatgcatctgtttcggaaaatagttttgtctgcaatggcattttggaagaacttaagcccgatagaggtacttctgaaactgatttggtttgcccatcggaatatcaacaaggatataatgtggtaaatcatgcaaacaacacatcctcaaggccaattgaagtattaaaagaggaggttcaaagatcttggaatgatgaggtgctgcatacttttggcagcagtcgcagtggacaagaagcaaatgctatgagtagcactgtgacctcaataaattctcaaggaccttcccttgttatttcggaggataaccaatcatttgctactggctctggcatatttagtagctcagtattggacgataagctgataagagtccctgttaatgacttagcacgcccaagtggtagtgagcaaacccctggttttgtaaataatctgaacaggatttatagcaccacatcatgggagcagcctaaatccgaggttgcagaaaattcaaggaacaatgaggccatcaatggttttttaaatgattcccaacctactgccgattccacctccgagcttaggtggagaaatggtgggcaaaatgtccagcagagtgcattggctgacaattcttctgcacttatgccatcatctgtcagttatccgaactttgatctgctgtcaagcaagggtgcaaatggagctttgagcataagtgaaaagtttgacaacacttcatgtttggaaggattaaagtcgagtagtttagagcagtttgagcatgactttctgactgctcaagcaacctatcagtcaaaggaatcaaatgtgttgtcatatgatgagactcatgagagtatagagcaaggtttcaattcatctggttggccagagaaggaagcactgccttcggtgccgaatatagaaagcaggcgtgagattaacagctgtgtctggtgcagaaatgagttttatcatgatgtttatggagccggaatgcaaactggttcagactccaacctccgctgcgtggagttcgtcaaggcacacgaggacaccgtggcggtggcgaaggacgggaccgtctacaccgggttggtggaccgtcggatccgggtgtgggcgagactgcaagacgagaagcgccacgtgttggtggcgacgctggagaagcacaagtcggcggtcgtccttcgcgtctctctctggccgtcagtggctgatgtcagccatgtggggagctcgggccgagctggcagcaaacttgactgggtaggaaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook MBD

Protein Analysis

1251

Amino Acids

136.13

Weight (kDa)

5.15

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120
malus_domestica	MD00G1009700.v1.1 MD08G1184300.v1.1 MD15G1370800.v1.1
prunus_persica	Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1
pyrus_communis	pycom08g15800
rosa_chinensis	RchiOBHm_Chr7g0238671 RchiOBHm_Chr7g0243951 RchiOBHm_Chr7g0243961
rosa_laevigata	RLG00000000820
rosa_multiflora	Rmu_sc0006110.1_g000008
rosa_roxburghii	Rroxscaffold_3G00221630
rosa_rugosa	Rorug07G0322800
rosa_samantha	Rh7AG477200 Rh7BG448500 Rh7CG495300 Rh7DG462200
rosa_wichuraiana	Rw7G039830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1109
AasI	GACNNNNNNGTC	2 cut(s)	167, 3554
AatII	GACGTC	2 cut(s)	378, 852
Acc36I	ACCTGC	1 cut(s)	1800
AccB1I	GGYRCC	3 cut(s)	464, 593, 3385
AccB7I	CCANNNNNTGG	2 cut(s)	2946, 3625
AccBSI	CCGCTC	3 cut(s)	165, 304, 568
AccI	GTMKAC	3 cut(s)	12, 54, 3558
AccII	CGCG	5 cut(s)	434, 507, 517, 736, 3669
AclWI	GGATC	5 cut(s)	142, 1394, 1407, 3577, 3590
AcoI	YGGCCR	8 cut(s)	3, 393, 508, 512, 731, 873, 3359, 3680
AcsI	RAATTY	6 cut(s)	1192, 1437, 1573, 2136, 2755, 2977
AcuI	CTGAAG	2 cut(s)	433, 1866
AcvI	CACGTG	1 cut(s)	3622
AcyI	GRCGYC	4 cut(s)	375, 440, 477, 849
AfaI	GTAC	6 cut(s)	419, 769, 1879, 1960, 2146, 2551
AflII	CTTAAG	1 cut(s)	2534
AflIII	ACRYGT	2 cut(s)	1979, 3621
AhlI	ACTAGT	1 cut(s)	1265
AjnI	CCWGG	4 cut(s)	33, 2290, 2433, 2902
AjuI	GAANNNNNNNTTGG	2 cut(s)	1403, 1435
AleI	CACNNNNGTG	1 cut(s)	410
Alw21I	GWGCWC	3 cut(s)	84, 1023, 3716
Alw26I	GTCTC	7 cut(s)	923, 1065, 1844, 1926, 3311, 3592, 3676
AlwI	GGATC	5 cut(s)	142, 1394, 1407, 3577, 3590
AlwNI	CAGNNNCTG	2 cut(s)	1967, 3692
Ama87I	CYCGRG	2 cut(s)	491, 3715
ApoI	RAATTY	6 cut(s)	1192, 1437, 1573, 2136, 2755, 2977
ArsI	GACNNNNNNTTYG	6 cut(s)	875, 907, 1565, 1597, 3290, 3322
AseI	ATTAAT	1 cut(s)	2196
Asp700I	GAANNNNTTC	1 cut(s)	2155
AspLEI	GCGC	6 cut(s)	436, 455, 507, 710, 940, 3618
AspS9I	GGNCC	7 cut(s)	978, 1844, 2394, 2765, 3552, 3574, 3718
AsuC2I	CCSGG	4 cut(s)	462, 712, 3565, 3587
AsuHPI	GGTGA	7 cut(s)	61, 116, 796, 841, 847, 1091, 1739
AsuII	TTCGAA	1 cut(s)	2140
AvaI	CYCGRG	2 cut(s)	491, 3715
AvaII	GGWCC	5 cut(s)	978, 1844, 2765, 3552, 3574
BaeGI	GKGCMC	1 cut(s)	1680
BalI	TGGCCA	3 cut(s)	5, 875, 3361
BamHI	GGATCC	2 cut(s)	1399, 3582
BanI	GGYRCC	3 cut(s)	464, 593, 3385
BanII	GRGCYC	5 cut(s)	84, 555, 1023, 2034, 3716
BauI	CACGAG	1 cut(s)	3521
BbrPI	CACGTG	1 cut(s)	3622
BbsI	GAAGAC	2 cut(s)	163, 2078
Bbv12I	GWGCWC	3 cut(s)	84, 1023, 3716
BbvCI	CCTCAGC	1 cut(s)	606
BceAI	ACGGC	5 cut(s)	408, 452, 518, 672, 3667
BcgI	CGANNNNNNTGC	4 cut(s)	2475, 2509, 3363, 3397
BciT130I	CCWGG	4 cut(s)	35, 2292, 2435, 2904
BcnI	CCSGG	4 cut(s)	462, 712, 3565, 3587
BcoDI	GTCTC	7 cut(s)	923, 1065, 1844, 1926, 3311, 3592, 3676
BcuI	ACTAGT	1 cut(s)	1265
BfaI	CTAG	3 cut(s)	987, 1266, 1758
BfmI	CTRYAG	1 cut(s)	1764
BfoI	RGCGCY	3 cut(s)	456, 711, 3619
BfrI	CTTAAG	1 cut(s)	2534
BfuAI	ACCTGC	1 cut(s)	1800
BglI	GCCNNNNNGGC	2 cut(s)	602, 3726
BglII	AGATCT	1 cut(s)	2666
BlpI	GCTNAGC	1 cut(s)	569
BmcAI	AGTACT	2 cut(s)	1879, 2146
Bme1390I	CCNGG	8 cut(s)	35, 462, 712, 2292, 2435, 2904, 3565, 3587
Bme18I	GGWCC	5 cut(s)	978, 1844, 2765, 3552, 3574
BmeT110I	CYCGRG	2 cut(s)	491, 3715
BmgT120I	GGNCC	7 cut(s)	978, 1844, 2394, 2765, 3552, 3574, 3718
BmiI	GGNNCC	8 cut(s)	466, 552, 595, 1401, 3387, 3463, 3553, 3584
BmrFI	CCNGG	8 cut(s)	35, 462, 712, 2292, 2435, 2904, 3565, 3587
BmrI	ACTGGG	2 cut(s)	2205, 3751
BmsI	GCATC	4 cut(s)	128, 856, 1373, 2495
BmuI	ACTGGG	2 cut(s)	2205, 3751
BpiI	GAAGAC	2 cut(s)	163, 2078
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
BpmI	CTGGAG	1 cut(s)	3659
Bpu10I	CCTNAGC	2 cut(s)	606, 3050
Bpu1102I	GCTNAGC	1 cut(s)	569
Bpu14I	TTCGAA	1 cut(s)	2140
BpuEI	CTTGAG	5 cut(s)	323, 1049, 2614, 2745, 3255
BpuMI	CCSGG	4 cut(s)	462, 712, 3565, 3587
BsaAI	YACGTR	1 cut(s)	3622
BsaHI	GRCGYC	4 cut(s)	375, 440, 477, 849
BsaJI	CCNNGG	7 cut(s)	515, 734, 2118, 2290, 2902, 2964, 3531
BsaWI	WCCGGW	1 cut(s)	547
Bse118I	RCCGGY	4 cut(s)	185, 510, 596, 620
Bse1I	ACTGG	9 cut(s)	980, 981, 1186, 2152, 2211, 2404, 2812, 3481, 3746
Bse3DI	GCAATG	2 cut(s)	622, 2521
BseBI	CCWGG	4 cut(s)	35, 2292, 2435, 2904
BseDI	CCNNGG	7 cut(s)	515, 734, 2118, 2290, 2902, 2964, 3531
BseGI	GGATG	8 cut(s)	616, 748, 766, 823, 871, 1427, 2182, 2624
BseMI	GCAATG	2 cut(s)	622, 2521
BseMII	CTCAG	7 cut(s)	583, 597, 788, 924, 1680, 1839, 2844
BseNI	ACTGG	9 cut(s)	980, 981, 1186, 2152, 2211, 2404, 2812, 3481, 3746
BseSI	GKGCMC	1 cut(s)	1680
BseX3I	CGGCCG	3 cut(s)	508, 512, 731
BseYI	CCCAGC	1 cut(s)	297
BsgI	GTGCAG	4 cut(s)	434, 1028, 3093, 3451
Bsh1236I	CGCG	5 cut(s)	434, 507, 517, 736, 3669
Bsh1285I	CGRYCG	5 cut(s)	163, 511, 515, 734, 3660
BshNI	GGYRCC	3 cut(s)	464, 593, 3385
BsiEI	CGRYCG	5 cut(s)	163, 511, 515, 734, 3660
BsiHKAI	GWGCWC	3 cut(s)	84, 1023, 3716
BsiHKCI	CYCGRG	2 cut(s)	491, 3715
BslFI	GGGAC	6 cut(s)	29, 679, 986, 1438, 2843, 3565
BsmAI	GTCTC	7 cut(s)	923, 1065, 1844, 1926, 3311, 3592, 3676
BsmBI	CGTCTC	1 cut(s)	3676
BsmFI	GGGAC	6 cut(s)	29, 679, 986, 1438, 2843, 3565
BsmI	GAATGC	2 cut(s)	1257, 3474
BsoBI	CYCGRG	2 cut(s)	491, 3715
Bsp119I	TTCGAA	1 cut(s)	2140
Bsp1286I	GDGCHC	6 cut(s)	84, 555, 1023, 1680, 2034, 3716
Bsp143I	GATC	8 cut(s)	147, 361, 1050, 1399, 2124, 2666, 3145, 3582
Bsp1720I	GCTNAGC	1 cut(s)	569
Bsp19I	CCATGG	1 cut(s)	2118
BspCNI	CTCAG	7 cut(s)	582, 598, 789, 925, 1679, 1840, 2843
BspFNI	CGCG	5 cut(s)	434, 507, 517, 736, 3669
BspHI	TCATGA	4 cut(s)	1297, 1927, 3322, 3448
BspLI	GGNNCC	8 cut(s)	466, 552, 595, 1401, 3387, 3463, 3553, 3584
BspMI	ACCTGC	1 cut(s)	1800
BspPI	GGATC	5 cut(s)	142, 1394, 1407, 3577, 3590
BspQI	GCTCTTC	1 cut(s)	353
BspT104I	TTCGAA	1 cut(s)	2140
BspT107I	GGYRCC	3 cut(s)	464, 593, 3385
BspTI	CTTAAG	1 cut(s)	2534
BsrBI	CCGCTC	3 cut(s)	165, 304, 568
BsrDI	GCAATG	2 cut(s)	622, 2521
BsrFI	RCCGGY	4 cut(s)	185, 510, 596, 620
BsrI	ACTGG	9 cut(s)	980, 981, 1186, 2152, 2211, 2404, 2812, 3481, 3746
BssAI	RCCGGY	4 cut(s)	185, 510, 596, 620
BssECI	CCNNGG	7 cut(s)	515, 734, 2118, 2290, 2902, 2964, 3531
BssMI	GATC	8 cut(s)	147, 361, 1050, 1399, 2124, 2666, 3145, 3582
BssNI	GRCGYC	4 cut(s)	375, 440, 477, 849
BssSI	CACGAG	1 cut(s)	3521
BssT1I	CCWWGG	1 cut(s)	2118
Bst2BI	CACGAG	1 cut(s)	3521
Bst2UI	CCWGG	4 cut(s)	35, 2292, 2435, 2904
Bst6I	CTCTTC	5 cut(s)	353, 710, 905, 989, 1929
BstACI	GRCGYC	4 cut(s)	375, 440, 477, 849
BstAFI	CTTAAG	1 cut(s)	2534
BstBAI	YACGTR	1 cut(s)	3622
BstBI	TTCGAA	1 cut(s)	2140
BstDEI	CTNAG	9 cut(s)	569, 606, 797, 933, 1666, 1848, 2830, 2872, 3050
BstDSI	CCRYGG	4 cut(s)	515, 734, 2118, 3531
BstF5I	GGATG	8 cut(s)	616, 748, 766, 823, 871, 1427, 2182, 2624
BstFNI	CGCG	5 cut(s)	434, 507, 517, 736, 3669
BstH2I	RGCGCY	3 cut(s)	456, 711, 3619
BstHHI	GCGC	6 cut(s)	436, 455, 507, 710, 940, 3618
BstKTI	GATC	8 cut(s)	150, 364, 1053, 1402, 2127, 2669, 3148, 3585
BstMAI	GTCTC	7 cut(s)	923, 1065, 1844, 1926, 3311, 3592, 3676
BstMBI	GATC	8 cut(s)	147, 361, 1050, 1399, 2124, 2666, 3145, 3582
BstMCI	CGRYCG	5 cut(s)	163, 511, 515, 734, 3660
BstNI	CCWGG	4 cut(s)	35, 2292, 2435, 2904
BstNSI	RCATGY	2 cut(s)	1983, 2486
BstSCI	CCNGG	8 cut(s)	33, 460, 710, 2290, 2433, 2902, 3563, 3585
BstSFI	CTRYAG	1 cut(s)	1764
BstSLI	GKGCMC	1 cut(s)	1680
BstUI	CGCG	5 cut(s)	434, 507, 517, 736, 3669
BstV2I	GAAGAC	2 cut(s)	163, 2078
BstX2I	RGATCY	3 cut(s)	1399, 2666, 3582
BstYI	RGATCY	3 cut(s)	1399, 2666, 3582
BstZI	CGGCCG	3 cut(s)	508, 512, 731
BtgI	CCRYGG	4 cut(s)	515, 734, 2118, 3531
BtgZI	GCGATG	1 cut(s)	1613
BtsCI	GGATG	8 cut(s)	616, 748, 766, 823, 871, 1427, 2182, 2624
BtsI	GCAGTG	2 cut(s)	2716, 3374
BveI	ACCTGC	1 cut(s)	1800
CaiI	CAGNNNCTG	2 cut(s)	1967, 3692
CciI	TCATGA	4 cut(s)	1297, 1927, 3322, 3448
CciNI	GCGGCCGC	1 cut(s)	731
CfoI	GCGC	6 cut(s)	436, 455, 507, 710, 940, 3618
Cfr10I	RCCGGY	4 cut(s)	185, 510, 596, 620
Cfr13I	GGNCC	7 cut(s)	978, 1844, 2394, 2765, 3552, 3574, 3718
Cfr42I	CCGCGG	2 cut(s)	518, 737
CseI	GACGC	4 cut(s)	448, 466, 3643, 3658
Csp6I	GTAC	6 cut(s)	418, 768, 1878, 1959, 2145, 2550
CviQI	GTAC	6 cut(s)	418, 768, 1878, 1959, 2145, 2550
DdeI	CTNAG	9 cut(s)	569, 606, 797, 933, 1666, 1848, 2830, 2872, 3050
DpnI	GATC	8 cut(s)	149, 363, 1052, 1401, 2126, 2668, 3147, 3584
DpnII	GATC	8 cut(s)	147, 361, 1050, 1399, 2124, 2666, 3145, 3582
DraI	TTTAAA	1 cut(s)	3012
DrdI	GACNNNNNNGTC	2 cut(s)	167, 3554
DseDI	GACNNNNNNGTC	2 cut(s)	167, 3554
EaeI	YGGCCR	8 cut(s)	3, 393, 508, 512, 731, 873, 3359, 3680
EagI	CGGCCG	3 cut(s)	508, 512, 731
Eam1104I	CTCTTC	5 cut(s)	353, 710, 905, 989, 1929
EarI	CTCTTC	5 cut(s)	353, 710, 905, 989, 1929
EciI	GGCGGA	3 cut(s)	50, 172, 206
Ecl136II	GAGCTC	3 cut(s)	82, 1021, 3714
EclXI	CGGCCG	3 cut(s)	508, 512, 731
Eco130I	CCWWGG	1 cut(s)	2118
Eco24I	GRGCYC	5 cut(s)	84, 555, 1023, 2034, 3716
Eco32I	GATATC	1 cut(s)	1534
Eco47I	GGWCC	5 cut(s)	978, 1844, 2765, 3552, 3574
Eco52I	CGGCCG	3 cut(s)	508, 512, 731
Eco53kI	GAGCTC	3 cut(s)	82, 1021, 3714
Eco57I	CTGAAG	2 cut(s)	433, 1866
Eco72I	CACGTG	1 cut(s)	3622
Eco88I	CYCGRG	2 cut(s)	491, 3715
EcoICRI	GAGCTC	3 cut(s)	82, 1021, 3714
EcoO109I	RGGNCCY	1 cut(s)	2765
EcoRI	GAATTC	3 cut(s)	1192, 1573, 2136
EcoRII	CCWGG	4 cut(s)	33, 2290, 2433, 2902
EcoRV	GATATC	1 cut(s)	1534
EcoT14I	CCWWGG	1 cut(s)	2118
EcoT22I	ATGCAT	2 cut(s)	871, 2488
EcoT38I	GRGCYC	5 cut(s)	84, 555, 1023, 2034, 3716
ErhI	CCWWGG	1 cut(s)	2118
Esp3I	CGTCTC	1 cut(s)	3676
FalI	AAGNNNNNCTT	4 cut(s)	332, 364, 678, 710
FaqI	GGGAC	6 cut(s)	29, 679, 986, 1438, 2843, 3565
FauI	CCCGC	3 cut(s)	218, 436, 562
FauNDI	CATATG	2 cut(s)	2470, 3310
FblI	GTMKAC	3 cut(s)	12, 54, 3558
FokI	GGATG	8 cut(s)	623, 755, 773, 830, 878, 1414, 2189, 2611
FriOI	GRGCYC	5 cut(s)	84, 555, 1023, 2034, 3716
FseI	GGCCGGCC	1 cut(s)	514
FspBI	CTAG	3 cut(s)	987, 1266, 1758
GlaI	GCGC	6 cut(s)	435, 454, 506, 709, 939, 3617
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	1 cut(s)	3659
HaeII	RGCGCY	3 cut(s)	456, 711, 3619
HgaI	GACGC	4 cut(s)	448, 466, 3643, 3658
HhaI	GCGC	6 cut(s)	436, 455, 507, 710, 940, 3618
Hin1I	GRCGYC	4 cut(s)	375, 440, 477, 849
Hin6I	GCGC	6 cut(s)	434, 453, 505, 708, 938, 3616
HinP1I	GCGC	6 cut(s)	434, 453, 505, 708, 938, 3616
HincII	GTYRAC	3 cut(s)	13, 55, 1867
HindII	GTYRAC	3 cut(s)	13, 55, 1867
HphI	GGTGA	7 cut(s)	61, 116, 796, 841, 847, 1091, 1739
Hpy166II	GTNNAC	8 cut(s)	13, 55, 838, 844, 1867, 2714, 3559, 3574
Hpy8I	GTNNAC	8 cut(s)	13, 55, 838, 844, 1867, 2714, 3559, 3574
HpyCH4IV	ACGT	5 cut(s)	141, 375, 840, 849, 3621
HpyF3I	CTNAG	9 cut(s)	569, 606, 797, 933, 1666, 1848, 2830, 2872, 3050
HpySE526I	ACGT	5 cut(s)	141, 375, 840, 849, 3621
Hsp92I	GRCGYC	4 cut(s)	375, 440, 477, 849
HspAI	GCGC	6 cut(s)	434, 453, 505, 708, 938, 3616
KroI	GCCGGC	3 cut(s)	185, 510, 596
KroNI	GCCGGC	3 cut(s)	187, 512, 598
KspI	CCGCGG	2 cut(s)	518, 737
Kzo9I	GATC	8 cut(s)	147, 361, 1050, 1399, 2124, 2666, 3145, 3582
LguI	GCTCTTC	1 cut(s)	353
LweI	GCATC	4 cut(s)	128, 856, 1373, 2495
MaeI	CTAG	3 cut(s)	987, 1266, 1758
MaeII	ACGT	5 cut(s)	141, 375, 840, 849, 3621
MaeIII	GTNAC	2 cut(s)	641, 2743
MalI	GATC	8 cut(s)	149, 363, 1052, 1401, 2126, 2668, 3147, 3584
MbiI	CCGCTC	3 cut(s)	165, 304, 568
MboI	GATC	8 cut(s)	147, 361, 1050, 1399, 2124, 2666, 3145, 3582
MfeI	CAATTG	2 cut(s)	1908, 2637
MflI	RGATCY	3 cut(s)	1399, 2666, 3582
MhlI	GDGCHC	6 cut(s)	84, 555, 1023, 1680, 2034, 3716
MlsI	TGGCCA	3 cut(s)	5, 875, 3361
MluNI	TGGCCA	3 cut(s)	5, 875, 3361
MlyI	GAGTC	6 cut(s)	32, 1843, 1928, 2865, 3313, 3479
MmeI	TCCRAC	7 cut(s)	381, 552, 906, 945, 1104, 3513, 3560
Mox20I	TGGCCA	3 cut(s)	5, 875, 3361
Mph1103I	ATGCAT	2 cut(s)	871, 2488
MroNI	GCCGGC	3 cut(s)	185, 510, 596
MroXI	GAANNNNTTC	1 cut(s)	2155
MscI	TGGCCA	3 cut(s)	5, 875, 3361
MslI	CAYNNNNRTG	2 cut(s)	410, 1206
Msp20I	TGGCCA	3 cut(s)	5, 875, 3361
MspA1I	CMGCKG	6 cut(s)	517, 560, 736, 796, 3420, 3498
MspCI	CTTAAG	1 cut(s)	2534
MspR9I	CCNGG	8 cut(s)	35, 462, 712, 2292, 2435, 2904, 3565, 3587
MunI	CAATTG	2 cut(s)	1908, 2637
Mva1269I	GAATGC	2 cut(s)	1257, 3474
MvaI	CCWGG	4 cut(s)	35, 2292, 2435, 2904
MvnI	CGCG	5 cut(s)	434, 507, 517, 736, 3669
NaeI	GCCGGC	3 cut(s)	187, 512, 598
NciI	CCSGG	4 cut(s)	462, 712, 3565, 3587
NcoI	CCATGG	1 cut(s)	2118
NdeI	CATATG	2 cut(s)	2470, 3310
NdeII	GATC	8 cut(s)	147, 361, 1050, 1399, 2124, 2666, 3145, 3582
NgoMIV	GCCGGC	3 cut(s)	185, 510, 596
NlaIV	GGNNCC	8 cut(s)	466, 552, 595, 1401, 3387, 3463, 3553, 3584
NmeAIII	GCCGAG	3 cut(s)	726, 1002, 3746
NmuCI	GTSAC	2 cut(s)	641, 2743
NotI	GCGGCCGC	1 cut(s)	731
NsiI	ATGCAT	2 cut(s)	871, 2488
NspI	RCATGY	2 cut(s)	1983, 2486
NspV	TTCGAA	1 cut(s)	2140
OliI	CACNNNNGTG	1 cut(s)	410
PaeI	GCATGC	1 cut(s)	2486
PagI	TCATGA	4 cut(s)	1297, 1927, 3322, 3448
PciI	ACATGT	1 cut(s)	1979
PciSI	GCTCTTC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	6 cut(s)	138, 165, 366, 846, 3528, 3666
PctI	GAATGC	2 cut(s)	1257, 3474
PdiI	GCCGGC	3 cut(s)	187, 512, 598
PdmI	GAANNNNTTC	1 cut(s)	2155
PflFI	GACNNNGTC	2 cut(s)	41, 374
PflMI	CCANNNNNTGG	2 cut(s)	2946, 3625
PleI	GAGTC	6 cut(s)	32, 1842, 1927, 2864, 3313, 3479
PmaCI	CACGTG	1 cut(s)	3622
PmlI	CACGTG	1 cut(s)	3622
PpsI	GAGTC	6 cut(s)	32, 1842, 1927, 2864, 3313, 3479
Ppu21I	YACGTR	1 cut(s)	3622
PpuMI	RGGWCCY	1 cut(s)	2765
PscI	ACATGT	1 cut(s)	1979
PshBI	ATTAAT	1 cut(s)	2196
PsiI	TTATAA	1 cut(s)	1109
Psp124BI	GAGCTC	3 cut(s)	84, 1023, 3716
Psp5II	RGGWCCY	1 cut(s)	2765
Psp6I	CCWGG	4 cut(s)	33, 2290, 2433, 2902
PspCI	CACGTG	1 cut(s)	3622
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	4 cut(s)	33, 2290, 2433, 2902
PspN4I	GGNNCC	8 cut(s)	466, 552, 595, 1401, 3387, 3463, 3553, 3584
PspPI	GGNCC	7 cut(s)	978, 1844, 2394, 2765, 3552, 3574, 3718
PspPPI	RGGWCCY	1 cut(s)	2765
PstNI	CAGNNNCTG	2 cut(s)	1967, 3692
PsuI	RGATCY	3 cut(s)	1399, 2666, 3582
PsyI	GACNNNGTC	2 cut(s)	41, 374
PvuII	CAGCTG	1 cut(s)	3420
RigI	GGCCGGCC	1 cut(s)	514
RsaI	GTAC	6 cut(s)	419, 769, 1879, 1960, 2146, 2551
RsaNI	GTAC	6 cut(s)	418, 768, 1878, 1959, 2145, 2550
RseI	CAYNNNNRTG	2 cut(s)	410, 1206
SacI	GAGCTC	3 cut(s)	84, 1023, 3716
SacII	CCGCGG	2 cut(s)	518, 737
SalI	GTCGAC	2 cut(s)	11, 53
SapI	GCTCTTC	1 cut(s)	353
Sau3AI	GATC	8 cut(s)	147, 361, 1050, 1399, 2124, 2666, 3145, 3582
Sau96I	GGNCC	7 cut(s)	978, 1844, 2394, 2765, 3552, 3574, 3718
ScaI	AGTACT	2 cut(s)	1879, 2146
SchI	GAGTC	6 cut(s)	32, 1843, 1928, 2865, 3313, 3479
ScrFI	CCNGG	8 cut(s)	35, 462, 712, 2292, 2435, 2904, 3565, 3587
SduI	GDGCHC	6 cut(s)	84, 555, 1023, 1680, 2034, 3716
SfaNI	GCATC	4 cut(s)	128, 856, 1373, 2495
SfcI	CTRYAG	1 cut(s)	1764
Sfr303I	CCGCGG	2 cut(s)	518, 737
SfuI	TTCGAA	1 cut(s)	2140
SgrBI	CCGCGG	2 cut(s)	518, 737
SgrDI	CGTCGACG	1 cut(s)	11
SinI	GGWCC	5 cut(s)	978, 1844, 2765, 3552, 3574
SmiMI	CAYNNNNRTG	2 cut(s)	410, 1206
SmlI	CTYRAG	6 cut(s)	338, 1064, 2534, 2629, 2760, 3270
SmoI	CTYRAG	6 cut(s)	338, 1064, 2534, 2629, 2760, 3270
SpeI	ACTAGT	1 cut(s)	1265
SphI	GCATGC	1 cut(s)	2486
SspI	AATATT	2 cut(s)	1216, 1547
SspMI	CTAG	3 cut(s)	987, 1266, 1758
SstI	GAGCTC	3 cut(s)	84, 1023, 3716
StyD4I	CCNGG	8 cut(s)	33, 460, 710, 2290, 2433, 2902, 3563, 3585
StyI	CCWWGG	1 cut(s)	2118
TaiI	ACGT	5 cut(s)	144, 378, 843, 852, 3624
TatI	WGTACW	5 cut(s)	417, 767, 1877, 1958, 2144
TseFI	GTSAC	2 cut(s)	641, 2743
Tsp45I	GTSAC	2 cut(s)	641, 2743
TspGWI	ACGGA	3 cut(s)	31, 157, 514
Tth111I	GACNNNGTC	2 cut(s)	41, 374
Van91I	CCANNNNNTGG	2 cut(s)	2946, 3625
Vha464I	CTTAAG	1 cut(s)	2534
VpaK11BI	GGWCC	5 cut(s)	978, 1844, 2765, 3552, 3574
VspI	ATTAAT	1 cut(s)	2196
XapI	RAATTY	6 cut(s)	1192, 1437, 1573, 2136, 2755, 2977
XceI	RCATGY	2 cut(s)	1983, 2486
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2218
XmiI	GTMKAC	3 cut(s)	12, 54, 3558
XmnI	GAANNNNTTC	1 cut(s)	2155
XspI	CTAG	3 cut(s)	987, 1266, 1758
ZraI	GACGTC	2 cut(s)	376, 850
ZrmI	AGTACT	2 cut(s)	1879, 2146
Zsp2I	ATGCAT	2 cut(s)	871, 2488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.