Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003067

Physical Location & Seq

Genomic Coordinates Forward (+)

70259180 .. 70262005

Gene Structure 2826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21865

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGAGATCAGTGTGCGAATTCGAAGTACTGGAAGCTATTCAAATGTTCCACCTCTGGATGGACATAGTTGTAATATTAATGCAACGAATCCCAGTTGCACAGTGGAAGAACTCTTGCAGGACAAGAGGTTAGCAAGCAACGCATTTAATTCATTTGTTAATAAGCAGACCCCTGGTAATCTAAATAAGGGTGCTATTCATACAGCAGAAGGGCATAAAGTTGAGCATGCCAAAAATTATGACAATAGTGAGTTAAGTGTTAATTTTGGTAGCAGGGCCACTGGAACTAATGCAGATACTACCTCTTGCATTGACCAGGAAAGAAGCTCTAAAGGCTATTCTCTTGCTTCATATGCGAACGAGCATGCATCTGTTTCGGAAAATAGTTTTGTCTGCAATGGCATTTTGGAAGAACTTAAGCCCGATAGAGGTACTTCTGAAACTGATTTGGTTTGCCCATCGGAATATCAACAAGGATATAATCTGGTAAATCATGCAAACAACACATCCTCAAGGCCAATTGAAGTATTAAAAGAGGAGGTTAAAAGATCTTGGAATGATGAGGTGCTGCATCCTTTTGGCAGCAGTCGCAGTGGACAAGAAGCGAATGCTATGAGTAGCACTGTGACCTCAATAAATTCTCAAGGACCTTCCCTTGTTATTTCGGGGGATAACCAATCATTTGCTACTGGCTCTGGCATATTTAGTAGCTCAGTATTGGACGATAAGCTGATAAGAGTCCCTGTTAATGACTTAGCACGCCCAAGTGGTAGTGAGCAAACCCCTGGTTTTGTAAATAATCTGAACAGGATTTATAGCACCACATCGTGGGAGCAGCCTAAATCCGAGGTTGCAGAAAATTCAAGGAACAATGAGGCCATCAATGGTTTTTTAAATGATTCCCAACCTACTGCCGATTCCATCTCCGAGCTTAGGTGGAGAAATGGTGGGCAAAACGTCCAGCAGAGTGCATTGGCTGACAATTCTTCTGCACTTATGCCATCATCTGTCAGTTATCCGAACTTTGATCTGCTGTCAAGCAAGGGTGCAAATGGAGCTTTGAGCATAAGTGAAAAGTTTGACAACACTTCATGTTTGGAAGGATTAAAGTCGAGTAGTTTAGAGCAGTTTGAGCATGACTTTCTGACTGCTCAAGCAACCTATCAGTCAAAGGAATCAAATGTGTTGTCATATGATGAGACTCATGAGAGTATAGAGCAAGGTTTCAATTCATCTGGTTGGCCAGAGAAGGAAGCACTGCCTTCGGTGCCAAATATAGAAAGCAGGCGTGAGATTAACAGCTGTGTCTGGTGCAGAAATGAGTTTTATCATGATGTTTATGGAGCCGGAATGCAAACTGGTTCAGTGGGTTTTATGTGTGCAAACTGCCAGGGCAAGTTCTCAGGTCATGTCGGTTTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook MBD

Protein Analysis

474

Amino Acids

51.49

Weight (kDa)

4.92

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120
malus_domestica	MD00G1009700.v1.1 MD08G1184300.v1.1 MD15G1370800.v1.1
prunus_persica	Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1
pyrus_communis	pycom08g15800
rosa_chinensis	RchiOBHm_Chr7g0238671 RchiOBHm_Chr7g0243951 RchiOBHm_Chr7g0243961
rosa_laevigata	RLG00000000820
rosa_multiflora	Rmu_sc0006110.1_g000008
rosa_roxburghii	Rroxscaffold_3G00221630
rosa_rugosa	Rorug07G0322800
rosa_samantha	Rh7AG477200 Rh7BG448500 Rh7CG495300 Rh7DG462200
rosa_wichuraiana	Rw7G039830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1267
AccB7I	CCANNNNNTGG	1 cut(s)	828
AcoI	YGGCCR	1 cut(s)	1241
AcsI	RAATTY	3 cut(s)	18, 637, 859
AdeI	CACNNNGTG	1 cut(s)	828
AfaI	GTAC	2 cut(s)	28, 433
AfiI	CCNNNNNNNGG	4 cut(s)	59, 428, 828, 933
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	4 cut(s)	42, 524, 864, 1228
AjnI	CCWGG	4 cut(s)	172, 315, 784, 1389
AluBI	AGCT	7 cut(s)	36, 327, 711, 730, 931, 1058, 1302
AluI	AGCT	7 cut(s)	36, 327, 711, 730, 931, 1058, 1302
Alw26I	GTCTC	1 cut(s)	1193
AoxI	GGCC	4 cut(s)	276, 515, 876, 1241
ApeKI	GCWGC	3 cut(s)	568, 582, 835
ApoI	RAATTY	3 cut(s)	18, 637, 859
ArsI	GACNNNNNNTTYG	2 cut(s)	1172, 1204
AseI	ATTAAT	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	276, 647
AsuII	TTCGAA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	647
BalI	TGGCCA	1 cut(s)	1243
BanI	GGYRCC	1 cut(s)	1267
BbvI	GCAGC	3 cut(s)	555, 594, 847
BccI	CCATC	5 cut(s)	53, 466, 887, 929, 1009
BcgI	CGANNNNNNTGC	4 cut(s)	357, 391, 1245, 1279
BciT130I	CCWGG	4 cut(s)	174, 317, 786, 1391
BcoDI	GTCTC	1 cut(s)	1193
BfmI	CTRYAG	1 cut(s)	1421
BfrI	CTTAAG	1 cut(s)	416
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	3 cut(s)	569, 583, 836
BlsI	GCNGC	3 cut(s)	570, 584, 837
BmcAI	AGTACT	1 cut(s)	28
Bme1390I	CCNGG	4 cut(s)	174, 317, 786, 1391
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	2 cut(s)	276, 647
BmiI	GGNNCC	2 cut(s)	1269, 1345
BmrFI	CCNGG	4 cut(s)	174, 317, 786, 1391
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	2 cut(s)	377, 580
BmuI	ACTGGG	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	932
Bpu14I	TTCGAA	1 cut(s)	22
BpuEI	CTTGAG	3 cut(s)	496, 627, 1137
BsaJI	CCNNGG	4 cut(s)	172, 784, 846, 1390
BsaXI	ACNNNNNCTCC	2 cut(s)	931, 961
Bsc4I	CCNNNNNNNGG	4 cut(s)	59, 428, 828, 933
Bse1I	ACTGG	5 cut(s)	34, 93, 286, 694, 1363
Bse3DI	GCAATG	1 cut(s)	403
BseBI	CCWGG	4 cut(s)	174, 317, 786, 1391
BseDI	CCNNGG	4 cut(s)	172, 784, 846, 1390
BseGI	GGATG	3 cut(s)	64, 506, 571
BseLI	CCNNNNNNNGG	4 cut(s)	59, 428, 828, 933
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	726, 1416
BseNI	ACTGG	5 cut(s)	34, 93, 286, 694, 1363
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	3 cut(s)	555, 594, 847
BsgI	GTGCAG	2 cut(s)	975, 1333
BshFI	GGCC	4 cut(s)	278, 517, 878, 1243
BshNI	GGYRCC	1 cut(s)	1267
BsiSI	CCGG	1 cut(s)	1347
BslFI	GGGAC	1 cut(s)	725
BslI	CCNNNNNNNGG	4 cut(s)	59, 428, 828, 933
BsmAI	GTCTC	1 cut(s)	1193
BsmFI	GGGAC	1 cut(s)	725
BsmI	GAATGC	2 cut(s)	613, 1356
BsnI	GGCC	4 cut(s)	278, 517, 878, 1243
Bsp119I	TTCGAA	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	6, 548, 1027
BspANI	GGCC	4 cut(s)	278, 517, 878, 1243
BspCNI	CTCAG	2 cut(s)	725, 1415
BspHI	TCATGA	2 cut(s)	1204, 1330
BspLI	GGNNCC	2 cut(s)	1269, 1345
BspT104I	TTCGAA	1 cut(s)	22
BspT107I	GGYRCC	1 cut(s)	1267
BspTI	CTTAAG	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	403
BsrI	ACTGG	5 cut(s)	34, 93, 286, 694, 1363
BssECI	CCNNGG	4 cut(s)	172, 784, 846, 1390
BssMI	GATC	3 cut(s)	6, 548, 1027
Bst2UI	CCWGG	4 cut(s)	174, 317, 786, 1391
Bst4CI	ACNGT	2 cut(s)	103, 625
BstAFI	CTTAAG	1 cut(s)	416
BstBI	TTCGAA	1 cut(s)	22
BstC8I	GCNNGC	5 cut(s)	136, 228, 366, 760, 1286
BstDEI	CTNAG	4 cut(s)	712, 754, 932, 1402
BstF5I	GGATG	3 cut(s)	64, 506, 571
BstKTI	GATC	3 cut(s)	9, 551, 1030
BstMAI	GTCTC	1 cut(s)	1193
BstMBI	GATC	3 cut(s)	6, 548, 1027
BstMWI	GCNNNNNNNGC	7 cut(s)	140, 333, 353, 588, 1055, 1132, 1267
BstNI	CCWGG	4 cut(s)	174, 317, 786, 1391
BstNSI	RCATGY	2 cut(s)	230, 368
BstSCI	CCNGG	4 cut(s)	172, 315, 784, 1389
BstSFI	CTRYAG	1 cut(s)	1421
BstV1I	GCAGC	3 cut(s)	555, 594, 847
BstX2I	RGATCY	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	548
BsuRI	GGCC	4 cut(s)	278, 517, 878, 1243
BtsCI	GGATG	3 cut(s)	64, 506, 571
BtsI	GCAGTG	2 cut(s)	598, 1256
BtsIMutI	CAGTG	7 cut(s)	16, 108, 279, 598, 621, 1256, 1371
Cac8I	GCNNGC	5 cut(s)	136, 228, 366, 760, 1286
CciI	TCATGA	2 cut(s)	1204, 1330
Cfr13I	GGNCC	2 cut(s)	276, 647
Csp6I	GTAC	2 cut(s)	27, 432
CviAII	CATG	8 cut(s)	227, 365, 494, 1092, 1136, 1205, 1331, 1409
CviQI	GTAC	2 cut(s)	27, 432
DdeI	CTNAG	4 cut(s)	712, 754, 932, 1402
DpnI	GATC	3 cut(s)	8, 550, 1029
DpnII	GATC	3 cut(s)	6, 548, 1027
DraI	TTTAAA	1 cut(s)	894
DraIII	CACNNNGTG	1 cut(s)	828
EaeI	YGGCCR	1 cut(s)	1241
Eco47I	GGWCC	1 cut(s)	647
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRI	GAATTC	1 cut(s)	18
EcoRII	CCWGG	4 cut(s)	172, 315, 784, 1389
EcoT22I	ATGCAT	1 cut(s)	370
FaeI	CATG	8 cut(s)	230, 368, 497, 1095, 1139, 1208, 1334, 1412
FaqI	GGGAC	1 cut(s)	725
FatI	CATG	8 cut(s)	226, 364, 493, 1091, 1135, 1204, 1330, 1408
FauNDI	CATATG	2 cut(s)	352, 1192
Fnu4HI	GCNGC	3 cut(s)	569, 583, 836
FokI	GGATG	3 cut(s)	71, 493, 558
Fsp4HI	GCNGC	3 cut(s)	569, 583, 836
GluI	GCNGC	3 cut(s)	569, 583, 836
HaeIII	GGCC	4 cut(s)	278, 517, 878, 1243
HapII	CCGG	1 cut(s)	1347
Hin1II	CATG	8 cut(s)	230, 368, 497, 1095, 1139, 1208, 1334, 1412
HinfI	GANTC	6 cut(s)	88, 738, 899, 917, 1175, 1201
HpaII	CCGG	1 cut(s)	1347
Hpy166II	GTNNAC	1 cut(s)	596
Hpy188I	TCNGA	8 cut(s)	379, 439, 463, 804, 847, 928, 1020, 1146
Hpy188III	TCNNGA	3 cut(s)	56, 1205, 1331
Hpy8I	GTNNAC	1 cut(s)	596
HpyAV	CCTTC	5 cut(s)	203, 660, 1094, 1243, 1272
HpyCH4III	ACNGT	2 cut(s)	103, 625
HpyCH4IV	ACGT	1 cut(s)	957
HpyF10VI	GCNNNNNNNGC	7 cut(s)	140, 333, 353, 588, 1055, 1132, 1267
HpyF3I	CTNAG	4 cut(s)	712, 754, 932, 1402
HpySE526I	ACGT	1 cut(s)	957
Hsp92II	CATG	8 cut(s)	230, 368, 497, 1095, 1139, 1208, 1334, 1412
Kzo9I	GATC	3 cut(s)	6, 548, 1027
LmnI	GCTCC	3 cut(s)	832, 1055, 1343
Lsp1109I	GCAGC	3 cut(s)	555, 594, 847
LweI	GCATC	2 cut(s)	377, 580
MaeII	ACGT	1 cut(s)	957
MaeIII	GTNAC	1 cut(s)	625
MalI	GATC	3 cut(s)	8, 550, 1029
MboI	GATC	3 cut(s)	6, 548, 1027
MboII	GAAGA	3 cut(s)	119, 422, 978
MfeI	CAATTG	1 cut(s)	519
MflI	RGATCY	1 cut(s)	548
MlsI	TGGCCA	1 cut(s)	1243
MluCI	AATT	9 cut(s)	18, 148, 235, 262, 519, 637, 859, 982, 1228
MluNI	TGGCCA	1 cut(s)	1243
MlyI	GAGTC	2 cut(s)	747, 1195
Mox20I	TGGCCA	1 cut(s)	1243
Mph1103I	ATGCAT	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	37
MscI	TGGCCA	1 cut(s)	1243
Msp20I	TGGCCA	1 cut(s)	1243
MspA1I	CMGCKG	1 cut(s)	1302
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	1 cut(s)	1347
MspR9I	CCNGG	4 cut(s)	174, 317, 786, 1391
MunI	CAATTG	1 cut(s)	519
Mva1269I	GAATGC	2 cut(s)	613, 1356
MvaI	CCWGG	4 cut(s)	174, 317, 786, 1391
MwoI	GCNNNNNNNGC	7 cut(s)	140, 333, 353, 588, 1055, 1132, 1267
NdeI	CATATG	2 cut(s)	352, 1192
NdeII	GATC	3 cut(s)	6, 548, 1027
NlaIII	CATG	8 cut(s)	230, 368, 497, 1095, 1139, 1208, 1334, 1412
NlaIV	GGNNCC	2 cut(s)	1269, 1345
NmuCI	GTSAC	1 cut(s)	625
NsiI	ATGCAT	1 cut(s)	370
NspI	RCATGY	2 cut(s)	230, 368
NspV	TTCGAA	1 cut(s)	22
PaeI	GCATGC	2 cut(s)	230, 368
PagI	TCATGA	2 cut(s)	1204, 1330
PctI	GAATGC	2 cut(s)	613, 1356
PdmI	GAANNNNTTC	1 cut(s)	37
PfeI	GAWTC	4 cut(s)	88, 899, 917, 1175
PflMI	CCANNNNNTGG	1 cut(s)	828
PkrI	GCNGC	3 cut(s)	570, 584, 837
PleI	GAGTC	2 cut(s)	746, 1195
PpsI	GAGTC	2 cut(s)	746, 1195
PpuMI	RGGWCCY	1 cut(s)	647
PshBI	ATTAAT	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	647
Psp6I	CCWGG	4 cut(s)	172, 315, 784, 1389
PspGI	CCWGG	4 cut(s)	172, 315, 784, 1389
PspN4I	GGNNCC	2 cut(s)	1269, 1345
PspPI	GGNCC	2 cut(s)	276, 647
PspPPI	RGGWCCY	1 cut(s)	647
PsuI	RGATCY	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	1302
RsaI	GTAC	2 cut(s)	28, 433
RsaNI	GTAC	2 cut(s)	27, 432
SatI	GCNGC	3 cut(s)	569, 583, 836
Sau3AI	GATC	3 cut(s)	6, 548, 1027
Sau96I	GGNCC	2 cut(s)	276, 647
ScaI	AGTACT	1 cut(s)	28
SchI	GAGTC	2 cut(s)	747, 1195
ScrFI	CCNGG	4 cut(s)	174, 317, 786, 1391
SfaNI	GCATC	2 cut(s)	377, 580
SfcI	CTRYAG	1 cut(s)	1421
SfuI	TTCGAA	1 cut(s)	22
SinI	GGWCC	1 cut(s)	647
SmlI	CTYRAG	4 cut(s)	416, 511, 642, 1152
SmoI	CTYRAG	4 cut(s)	416, 511, 642, 1152
SphI	GCATGC	2 cut(s)	230, 368
Sse9I	AATT	9 cut(s)	18, 148, 235, 262, 519, 637, 859, 982, 1228
SspI	AATATT	1 cut(s)	76
StyD4I	CCNGG	4 cut(s)	172, 315, 784, 1389
TaaI	ACNGT	2 cut(s)	103, 625
TaiI	ACGT	1 cut(s)	960
TaqI	TCGA	2 cut(s)	22, 1112
TasI	AATT	9 cut(s)	18, 148, 235, 262, 519, 637, 859, 982, 1228
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	4 cut(s)	88, 899, 917, 1175
TscAI	CASTG	7 cut(s)	16, 108, 286, 598, 628, 1263, 1371
TseFI	GTSAC	1 cut(s)	625
TseI	GCWGC	3 cut(s)	568, 582, 835
Tsp45I	GTSAC	1 cut(s)	625
TspDTI	ATGAA	5 cut(s)	141, 188, 339, 1080, 1221
TspRI	CASTG	7 cut(s)	16, 108, 286, 598, 628, 1263, 1371
Van91I	CCANNNNNTGG	1 cut(s)	828
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	647
VspI	ATTAAT	1 cut(s)	78
XapI	RAATTY	3 cut(s)	18, 637, 859
XceI	RCATGY	2 cut(s)	230, 368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	37
ZrmI	AGTACT	1 cut(s)	28
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.