Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003067

Physical Location & Seq

Genomic Coordinates Forward (+)

65840374 .. 65847551

Gene Structure 7178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG462200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3534 bp

ATGGCCACCGTCGATGACCACCACCTCCTCCACCTGGACTCCGTCCCCGTCGTCGACCTCCGCCTCCTCACCCAATCCGAGCTCTACTCCCTCTCCCTCTCCTCCTCCTCTTCCTCCGCATCTCACCGCTTCGACGACGACGTTTTGATCCCCAAAATCGACCGCTCCGTCTTCAACGAATCCGCCGGCAGCCGCAAACAGACCTACTCCCGCCTCCGCCTCGCCCCTCGCAACTCCCAATTCGCCTCCTCCAATTCCAAATCTGCCCTCCCTGCCTCCCACCTCCTCCTGTCCCAGTCGCTCGATCAAGAGAGCCGCCAGATTATCTCGCTCCTCAAGCAGCTCTTCCCCTCCGACGATCAAAACGACGACGTTCTGCTCCCCCAAACCACCACCACCACCCCCGTGCAGTACAAAATCCCCGCCGCGCCGGCGCCTTCCTTCAACGCCTCGGCCGGTGCGGTTTCTGGCGTCGATTCCTCGCTCGGGAAACGGAAGCGCGGCCGGCCGCGGAAGGATTCTAACGCCGTGGTTGCGAAACCGGAGGCGGCTGTGCCGGTCGGCTCTGCTGCGTTGGCTGGCGGTGCCCGTGGGGCTGAGGATGGCAATGCCGGTGTTTTGGTTGAGAAGCGTGATGGTGGAGCTACGGCGGTTGGGACTTTTGTGCTGAATAGCGAAGGACAGCTTGTGCCGAGTAGCGAGGGGAAGAGGAAGCGAGGGCGGCCGCGGAAGGATGAGATTAGGGTTAGGGATGAGAGGACAGTGGCGGCTTCGGTGAGGAAACCGCCGAGAGTGAAGAAGGAGGAGGATGGAGAGATGGTGATGGTGAACGTGAACGACGTCGTTGTGGATTTGGAAGCATTGGCCAATGCGGACAGTGTGTTTGGGGAGGAGTTGAGGAAGAGGACAGAGGGGTTGGAGACTGAGGCGAAGTTGTTAGGGTTTCTGGAAGGGTTGGAGGGGGACTGGCCAAGTGCTAGGAAGAAGAGGAAGATTGTGCAGGCGAGTGAGCTCGGCGACTTGTTGCCGAAGTGGTGGAAGATCATGCTGTCTCTCAAGAGGAATGGAGGTCATAAATGGCTTGTGTGTAGGCGGTTTATAAGCCCTAATGGGTTGGAGTTTGTGTCGTGCAAGGAAGTTTCTTCATACTTGCACTCTTATTTTGGACTTGGAAGCCGGTCGAATTCTGTTCATACCGATGGGAATATTCAGGTTTCTAATAAAATGGTTTTGGGAGATGGAATGCAACATGATACTAATTTTACCTATAAAGATAACAACAATGGTCATGAGCTTCTTCGCTGCTCCCCAATGCCCATTACCTCTATGAACAGCTATGTCAAGAGCATTGAAGCATCAGGAGAAGTAATGGGTATGCGAAAAAAATTGGATCCTGTAAAGAATGGTCGTTTGGGGACATCCTTGAAAATTCAAGAACCAGTTGAGATAGATGGGGAACAAACTTCTGATATGATAGCCAACTATGATTTGAGTTCTGATTTCTCTCTGGGTAAGGTAAATGATATCATGGCAAAATATTTTGGCACATCCAATGATGAATCGAATTCAATGTCCTGTGAGGAGCAAGCGATGATGGCTGACAAAACAATTTGCTTTTCTGATGGATTAAATGATGGTGTCAAGGTTGCCATCAGCTCAGTTGATGTGCCCAAAGTGGAGATAGACAGTGCTTCAAATGACATGGGAAAAGAACATGGAGCTGACTATATTGATAATCACCAATCAACTAGCACTGTAGATGATATGAAAATTGATGATGTGGATAATTGTAGGAATGGCAGGTCAATATCTGGTATTAGTGAGAGTCACATTGGACCTGAGACTGCATATAATGTTGACCAACAAAGTACTTCAGAAGCCTGCTCGCTTGTTCCTTCAATTGTGATGGAGTCTCTTCATGAAAGAGGTTCCGACAGTGGTTTATATAGTACAGCCACTGATGAGAAAACATGTGTTGTCAGTAATAACTTCAATAATGATTCATTCCCCACATTTTATGAGCCCAGATTTGATGATATTGGCCTATCTGGGAGTAATGAGAAGACATTTTGTTTTGGCAGCGATCATGCTATGCCAGATGTAGATTCCATGGAGATCAGTGAGCGAATTCGAAGTACTGGAAGCTATTCAAATGTTCCACCTCTGGATGGACATAGTTGTATTATTAATGCAACGAATCCCAGTTGCACAGTGGAAGAACTCTTGCAGGACAAGAGTTTAGCAAGCAATGCATTTAATTCTTTTGTTAATAAGCAGACCCCTGGTAATCTAAATAAGGGTGCTATTCATACAGCAGAAGGGCATAAAGTTGAGCATGCCAAAAATTATGACAATAGTGAGTTAAGTGTTAATTTTGGTAGCAGGGCCACTGGAACTAATGCAGATGCTACCTCTTGCATTGACCAGGAAAGAAGCTCTAAAGGCTATTCACTTGCTTCATATGCAAACGAGCATGCATCTATTTCAGAAAATAGTTTTCTCTGCAATAGCATTTTGGAAGAACTTAAGCCCGATAGAGGTACTTCTGAAACTGATTTGGTTTGCCCATCGGAATATCAACAAGGATATAATCTGGTAAATCATGCAAACAACACATCCTCAAGGCCAATTGAAGTATTAAAAGAGGAGGTTAAAAGATCTTGGAATGATGAGGTGCTGCATACTTTTGGCAGCAGTTGCAGTGGACAAGAAGCGAATGCTATGAGTAGCACTGTGACCTCAATAAATTCTCAAGGACCTTCCCTTGTTATTTCGGAGGATAACCAATCATTTGCTACTGGCTCTGGCATATTTAGTAGCTCAGTATTGGACGATAAGCTGATAAGATTCCCTGTTAATGACTTAGCACGCCCAAGTGGTAGTGAGCAAACCCCTGATTTTGTAAATAATCTGAACAGGATTTATAGCACCACAATGTGGGAGCAGCCTAAATCCGAGGTTGCAGAAAATTCAAGGAACAATGAGGCCATCAATGGTTTTTTAAATGATTCCCAACCTACTGCCGATTCCATCTCCGAGCTTAGGTGGAGAAATGGTGGGCAAAACGTCCAGCAGAGTGCATTGGCTGACAATTCTTCTGCACTTATGCCATCATCTGTCAGTTATCCGAACTTTGATCTGCTGTCAGGCAAGGGTGCAACTGGAGCTTTGAGCATGAGTGAAAAGTTCGACAACACTTCATGTTTGGAAGGATTAAAGTCAAGTAGATTAGAGCAGTTTGAGCATGACTTTCTGACTGCTCAAGCAACCTCTCAGTCAAAGGAATCAAATGTGTTGTCATATGATGAGACTCATGAGAGTATAGAGCAAGGTTTCAATTCATCTGGTTGGCCAGAGAAGGAACCACTTCCTTCGGTGCCAAATATGGAAAGCAGGCGTGAGATTAACAGCTGTGTCTGGTGCAGAAATGAGTTTTATCATGATGTTTATGGAGCCGGAATGCAAACTGGTTCAGTGGGTTTTATGTGTGCAAACTGCCAGGGCAAGTTCTCAGGTCATGTCGGTTTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook MBD

Protein Analysis

1177

Amino Acids

128.14

Weight (kDa)

5.05

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120
malus_domestica	MD00G1009700.v1.1 MD08G1184300.v1.1 MD15G1370800.v1.1
prunus_persica	Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1
pyrus_communis	pycom08g15800
rosa_chinensis	RchiOBHm_Chr7g0238671 RchiOBHm_Chr7g0243951 RchiOBHm_Chr7g0243961
rosa_laevigata	RLG00000000820
rosa_multiflora	Rmu_sc0006110.1_g000008
rosa_roxburghii	Rroxscaffold_3G00221630
rosa_rugosa	Rorug07G0322800
rosa_samantha	Rh7AG477200 Rh7BG448500 Rh7CG495300 Rh7DG462200
rosa_wichuraiana	Rw7G039830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1100
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	1 cut(s)	843
Acc36I	ACCTGC	1 cut(s)	1791
AccB1I	GGYRCC	3 cut(s)	433, 584, 3376
AccB7I	CCANNNNNTGG	1 cut(s)	2937
AccBSI	CCGCTC	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	4 cut(s)	428, 501, 511, 727
AclWI	GGATC	3 cut(s)	142, 1385, 1398
AcoI	YGGCCR	8 cut(s)	3, 453, 502, 506, 722, 864, 968, 3350
AcsI	RAATTY	6 cut(s)	1183, 1428, 1564, 2127, 2746, 2968
AcuI	CTGAAG	1 cut(s)	1857
AcyI	GRCGYC	3 cut(s)	434, 471, 840
AdeI	CACNNNGTG	1 cut(s)	2937
AfaI	GTAC	5 cut(s)	413, 1870, 1951, 2137, 2542
AfiI	CCNNNNNNNGG	6 cut(s)	34, 486, 2168, 2537, 2937, 3042
AflII	CTTAAG	1 cut(s)	2525
AflIII	ACRYGT	1 cut(s)	1970
AjnI	CCWGG	4 cut(s)	33, 2281, 2424, 3498
AjuI	GAANNNNNNNTTGG	2 cut(s)	1394, 1426
AleI	CACNNNNGTG	1 cut(s)	404
Alw21I	GWGCWC	2 cut(s)	84, 1014
Alw26I	GTCTC	5 cut(s)	914, 1056, 1835, 1917, 3302
AlwI	GGATC	3 cut(s)	142, 1385, 1398
AlwNI	CAGNNNCTG	1 cut(s)	1958
Ama87I	CYCGRG	1 cut(s)	485
ApeKI	GCWGC	8 cut(s)	189, 340, 569, 1302, 2079, 2677, 2691, 2944
ApoI	RAATTY	6 cut(s)	1183, 1428, 1564, 2127, 2746, 2968
ArsI	GACNNNNNNTTYG	6 cut(s)	866, 898, 1556, 1588, 3281, 3313
AseI	ATTAAT	1 cut(s)	2187
Asp700I	GAANNNNTTC	2 cut(s)	2146, 3366
AspLEI	GCGC	3 cut(s)	430, 436, 501
AspS9I	GGNCC	3 cut(s)	1835, 2385, 2756
AsuHPI	GGTGA	6 cut(s)	61, 116, 787, 832, 838, 1730
AsuII	TTCGAA	1 cut(s)	2131
AvaI	CYCGRG	1 cut(s)	485
AvaII	GGWCC	2 cut(s)	1835, 2756
BaeGI	GKGCMC	2 cut(s)	589, 1671
BalI	TGGCCA	4 cut(s)	5, 866, 970, 3352
BamHI	GGATCC	1 cut(s)	1390
BanI	GGYRCC	3 cut(s)	433, 584, 3376
BanII	GRGCYC	3 cut(s)	84, 1014, 2025
BbsI	GAAGAC	2 cut(s)	163, 2069
Bbv12I	GWGCWC	2 cut(s)	84, 1014
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	8 cut(s)	201, 352, 556, 1289, 2091, 2664, 2703, 2956
BceAI	ACGGC	2 cut(s)	512, 663
BciT130I	CCWGG	4 cut(s)	35, 2283, 2426, 3500
BcoDI	GTCTC	5 cut(s)	914, 1056, 1835, 1917, 3302
BfaI	CTAG	2 cut(s)	978, 1749
BfmI	CTRYAG	2 cut(s)	1755, 3530
BfoI	RGCGCY	1 cut(s)	437
BfrI	CTTAAG	1 cut(s)	2525
BfuAI	ACCTGC	1 cut(s)	1791
BglI	GCCNNNNNGGC	2 cut(s)	431, 593
BglII	AGATCT	1 cut(s)	2657
BmcAI	AGTACT	2 cut(s)	1870, 2137
Bme1390I	CCNGG	4 cut(s)	35, 2283, 2426, 3500
Bme18I	GGWCC	2 cut(s)	1835, 2756
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	3 cut(s)	1835, 2385, 2756
BmiI	GGNNCC	7 cut(s)	435, 586, 1392, 1930, 3363, 3378, 3454
BmrFI	CCNGG	4 cut(s)	35, 2283, 2426, 3500
BmrI	ACTGGG	2 cut(s)	289, 2196
BmsI	GCATC	4 cut(s)	128, 1364, 2395, 2486
BmuI	ACTGGG	2 cut(s)	289, 2196
BpiI	GAAGAC	2 cut(s)	163, 2069
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
BpmI	CTGGAG	1 cut(s)	3183
Bpu10I	CCTNAGC	2 cut(s)	597, 3041
Bpu14I	TTCGAA	1 cut(s)	2131
BpuEI	CTTGAG	5 cut(s)	320, 1040, 2605, 2736, 3246
BsaHI	GRCGYC	3 cut(s)	434, 471, 840
BsaJI	CCNNGG	9 cut(s)	450, 509, 528, 589, 725, 2109, 2281, 2955, 3499
BsaWI	WCCGGW	1 cut(s)	541
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 486, 2168, 2537, 2937, 3042
Bse118I	RCCGGY	7 cut(s)	185, 430, 455, 504, 556, 611, 1176
Bse1I	ACTGG	9 cut(s)	295, 971, 1439, 2143, 2202, 2395, 2803, 3166, 3472
Bse3DI	GCAATG	2 cut(s)	613, 2254
BseBI	CCWGG	4 cut(s)	35, 2283, 2426, 3500
BseDI	CCNNGG	9 cut(s)	450, 509, 528, 589, 725, 2109, 2281, 2955, 3499
BseGI	GGATG	8 cut(s)	607, 739, 757, 814, 1418, 1547, 2173, 2615
BseLI	CCNNNNNNNGG	6 cut(s)	34, 486, 2168, 2537, 2937, 3042
BseMI	GCAATG	2 cut(s)	613, 2254
BseMII	CTCAG	7 cut(s)	588, 915, 1671, 1830, 2835, 3287, 3525
BseNI	ACTGG	9 cut(s)	295, 971, 1439, 2143, 2202, 2395, 2803, 3166, 3472
BseSI	GKGCMC	2 cut(s)	589, 1671
BseX3I	CGGCCG	4 cut(s)	453, 502, 506, 722
BseXI	GCAGC	8 cut(s)	201, 352, 556, 1289, 2091, 2664, 2703, 2956
BsgI	GTGCAG	4 cut(s)	428, 1019, 3084, 3442
Bsh1236I	CGCG	4 cut(s)	428, 501, 511, 727
Bsh1285I	CGRYCG	7 cut(s)	163, 456, 505, 509, 561, 725, 1181
BshNI	GGYRCC	3 cut(s)	433, 584, 3376
BsiEI	CGRYCG	7 cut(s)	163, 456, 505, 509, 561, 725, 1181
BsiHKAI	GWGCWC	2 cut(s)	84, 1014
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	9 cut(s)	186, 431, 456, 505, 542, 557, 612, 1177, 3456
BslFI	GGGAC	5 cut(s)	29, 277, 670, 977, 1429
BslI	CCNNNNNNNGG	6 cut(s)	34, 486, 2168, 2537, 2937, 3042
BsmAI	GTCTC	5 cut(s)	914, 1056, 1835, 1917, 3302
BsmFI	GGGAC	5 cut(s)	29, 277, 670, 977, 1429
BsmI	GAATGC	3 cut(s)	1248, 2722, 3465
BsoBI	CYCGRG	1 cut(s)	485
Bsp119I	TTCGAA	1 cut(s)	2131
Bsp1286I	GDGCHC	5 cut(s)	84, 589, 1014, 1671, 2025
Bsp143I	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
Bsp19I	CCATGG	1 cut(s)	2109
BspCNI	CTCAG	7 cut(s)	589, 916, 1670, 1831, 2834, 3286, 3524
BspFNI	CGCG	4 cut(s)	428, 501, 511, 727
BspHI	TCATGA	4 cut(s)	1288, 1918, 3313, 3439
BspLI	GGNNCC	7 cut(s)	435, 586, 1392, 1930, 3363, 3378, 3454
BspMI	ACCTGC	1 cut(s)	1791
BspPI	GGATC	3 cut(s)	142, 1385, 1398
BspQI	GCTCTTC	1 cut(s)	350
BspT104I	TTCGAA	1 cut(s)	2131
BspT107I	GGYRCC	3 cut(s)	433, 584, 3376
BspTI	CTTAAG	1 cut(s)	2525
BsrBI	CCGCTC	1 cut(s)	165
BsrDI	GCAATG	2 cut(s)	613, 2254
BsrFI	RCCGGY	7 cut(s)	185, 430, 455, 504, 556, 611, 1176
BsrI	ACTGG	9 cut(s)	295, 971, 1439, 2143, 2202, 2395, 2803, 3166, 3472
BssAI	RCCGGY	7 cut(s)	185, 430, 455, 504, 556, 611, 1176
BssECI	CCNNGG	9 cut(s)	450, 509, 528, 589, 725, 2109, 2281, 2955, 3499
BssMI	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
BssNI	GRCGYC	3 cut(s)	434, 471, 840
BssT1I	CCWWGG	1 cut(s)	2109
Bst2UI	CCWGG	4 cut(s)	35, 2283, 2426, 3500
Bst4CI	ACNGT	8 cut(s)	10, 763, 878, 1688, 1756, 1937, 2212, 2734
Bst6I	CTCTTC	6 cut(s)	115, 350, 701, 896, 980, 1920
BstACI	GRCGYC	3 cut(s)	434, 471, 840
BstAFI	CTTAAG	1 cut(s)	2525
BstAPI	GCANNNNNTGC	2 cut(s)	2249, 2697
BstBI	TTCGAA	1 cut(s)	2131
BstDEI	CTNAG	9 cut(s)	597, 924, 1657, 1839, 2821, 2863, 3041, 3273, 3511
BstDSI	CCRYGG	5 cut(s)	509, 528, 589, 725, 2109
BstF5I	GGATG	8 cut(s)	607, 739, 757, 814, 1418, 1547, 2173, 2615
BstFNI	CGCG	4 cut(s)	428, 501, 511, 727
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	3 cut(s)	430, 436, 501
BstKTI	GATC	9 cut(s)	150, 307, 361, 1044, 1393, 2086, 2118, 2660, 3139
BstMAI	GTCTC	5 cut(s)	914, 1056, 1835, 1917, 3302
BstMBI	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
BstMCI	CGRYCG	7 cut(s)	163, 456, 505, 509, 561, 725, 1181
BstNI	CCWGG	4 cut(s)	35, 2283, 2426, 3500
BstNSI	RCATGY	3 cut(s)	1974, 2339, 2477
BstSCI	CCNGG	4 cut(s)	33, 2281, 2424, 3498
BstSFI	CTRYAG	2 cut(s)	1755, 3530
BstSLI	GKGCMC	2 cut(s)	589, 1671
BstUI	CGCG	4 cut(s)	428, 501, 511, 727
BstV1I	GCAGC	8 cut(s)	201, 352, 556, 1289, 2091, 2664, 2703, 2956
BstV2I	GAAGAC	2 cut(s)	163, 2069
BstX2I	RGATCY	2 cut(s)	1390, 2657
BstYI	RGATCY	2 cut(s)	1390, 2657
BstZI	CGGCCG	4 cut(s)	453, 502, 506, 722
BtgI	CCRYGG	5 cut(s)	509, 528, 589, 725, 2109
BtgZI	GCGATG	1 cut(s)	1604
BtsCI	GGATG	8 cut(s)	607, 739, 757, 814, 1418, 1547, 2173, 2615
BtsI	GCAGTG	1 cut(s)	2707
BveI	ACCTGC	1 cut(s)	1791
CaiI	CAGNNNCTG	1 cut(s)	1958
CciI	TCATGA	4 cut(s)	1288, 1918, 3313, 3439
CciNI	GCGGCCGC	1 cut(s)	722
CfoI	GCGC	3 cut(s)	430, 436, 501
Cfr10I	RCCGGY	7 cut(s)	185, 430, 455, 504, 556, 611, 1176
Cfr13I	GGNCC	3 cut(s)	1835, 2385, 2756
Cfr42I	CCGCGG	2 cut(s)	512, 728
CseI	GACGC	1 cut(s)	460
Csp6I	GTAC	5 cut(s)	412, 1869, 1950, 2136, 2541
CviQI	GTAC	5 cut(s)	412, 1869, 1950, 2136, 2541
DdeI	CTNAG	9 cut(s)	597, 924, 1657, 1839, 2821, 2863, 3041, 3273, 3511
DinI	GGCGCC	1 cut(s)	435
DpnI	GATC	9 cut(s)	149, 306, 360, 1043, 1392, 2085, 2117, 2659, 3138
DpnII	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
DraI	TTTAAA	1 cut(s)	3003
DraIII	CACNNNGTG	1 cut(s)	2937
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	8 cut(s)	3, 453, 502, 506, 722, 864, 968, 3350
EagI	CGGCCG	4 cut(s)	453, 502, 506, 722
Eam1104I	CTCTTC	6 cut(s)	115, 350, 701, 896, 980, 1920
EarI	CTCTTC	6 cut(s)	115, 350, 701, 896, 980, 1920
EciI	GGCGGA	3 cut(s)	50, 172, 206
Ecl136II	GAGCTC	2 cut(s)	82, 1012
EclXI	CGGCCG	4 cut(s)	453, 502, 506, 722
Eco130I	CCWWGG	1 cut(s)	2109
Eco24I	GRGCYC	3 cut(s)	84, 1014, 2025
Eco32I	GATATC	1 cut(s)	1525
Eco47I	GGWCC	2 cut(s)	1835, 2756
Eco52I	CGGCCG	4 cut(s)	453, 502, 506, 722
Eco53kI	GAGCTC	2 cut(s)	82, 1012
Eco57I	CTGAAG	1 cut(s)	1857
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	2 cut(s)	82, 1012
EcoO109I	RGGNCCY	1 cut(s)	2756
EcoRI	GAATTC	3 cut(s)	1183, 1564, 2127
EcoRII	CCWGG	4 cut(s)	33, 2281, 2424, 3498
EcoRV	GATATC	1 cut(s)	1525
EcoT14I	CCWWGG	1 cut(s)	2109
EcoT22I	ATGCAT	2 cut(s)	2254, 2479
EcoT38I	GRGCYC	3 cut(s)	84, 1014, 2025
EgeI	GGCGCC	1 cut(s)	435
EheI	GGCGCC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	2109
FalI	AAGNNNNNCTT	4 cut(s)	329, 361, 669, 701
FaqI	GGGAC	5 cut(s)	29, 277, 670, 977, 1429
FauI	CCCGC	2 cut(s)	218, 430
FauNDI	CATATG	2 cut(s)	2461, 3301
FblI	GTMKAC	1 cut(s)	54
FokI	GGATG	8 cut(s)	614, 746, 764, 821, 1405, 1534, 2180, 2602
FriOI	GRGCYC	3 cut(s)	84, 1014, 2025
FseI	GGCCGGCC	1 cut(s)	508
FspBI	CTAG	2 cut(s)	978, 1749
GlaI	GCGC	3 cut(s)	429, 435, 500
GsuI	CTGGAG	1 cut(s)	3183
HaeII	RGCGCY	1 cut(s)	437
HapII	CCGG	9 cut(s)	186, 431, 456, 505, 542, 557, 612, 1177, 3456
HgaI	GACGC	1 cut(s)	460
HhaI	GCGC	3 cut(s)	430, 436, 501
Hin1I	GRCGYC	3 cut(s)	434, 471, 840
Hin6I	GCGC	3 cut(s)	428, 434, 499
HinP1I	GCGC	3 cut(s)	428, 434, 499
HincII	GTYRAC	2 cut(s)	55, 1858
HindII	GTYRAC	2 cut(s)	55, 1858
HpaII	CCGG	9 cut(s)	186, 431, 456, 505, 542, 557, 612, 1177, 3456
HphI	GGTGA	6 cut(s)	61, 116, 787, 832, 838, 1730
Hpy166II	GTNNAC	5 cut(s)	55, 829, 835, 1858, 2705
Hpy8I	GTNNAC	5 cut(s)	55, 829, 835, 1858, 2705
HpyCH4III	ACNGT	8 cut(s)	10, 763, 878, 1688, 1756, 1937, 2212, 2734
HpyCH4IV	ACGT	5 cut(s)	141, 372, 831, 840, 3066
HpyF3I	CTNAG	9 cut(s)	597, 924, 1657, 1839, 2821, 2863, 3041, 3273, 3511
HpySE526I	ACGT	5 cut(s)	141, 372, 831, 840, 3066
Hsp92I	GRCGYC	3 cut(s)	434, 471, 840
HspAI	GCGC	3 cut(s)	428, 434, 499
KasI	GGCGCC	1 cut(s)	433
KroI	GCCGGC	3 cut(s)	185, 430, 504
KroNI	GCCGGC	3 cut(s)	187, 432, 506
KspI	CCGCGG	2 cut(s)	512, 728
Kzo9I	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
LguI	GCTCTTC	1 cut(s)	350
Lsp1109I	GCAGC	8 cut(s)	201, 352, 556, 1289, 2091, 2664, 2703, 2956
LweI	GCATC	4 cut(s)	128, 1364, 2395, 2486
MaeI	CTAG	2 cut(s)	978, 1749
MaeII	ACGT	5 cut(s)	141, 372, 831, 840, 3066
MaeIII	GTNAC	2 cut(s)	1826, 2734
MalI	GATC	9 cut(s)	149, 306, 360, 1043, 1392, 2085, 2117, 2659, 3138
MbiI	CCGCTC	1 cut(s)	165
MboI	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
MfeI	CAATTG	2 cut(s)	1899, 2628
MflI	RGATCY	2 cut(s)	1390, 2657
MhlI	GDGCHC	5 cut(s)	84, 589, 1014, 1671, 2025
MlsI	TGGCCA	4 cut(s)	5, 866, 970, 3352
MluNI	TGGCCA	4 cut(s)	5, 866, 970, 3352
Mly113I	GGCGCC	1 cut(s)	434
MlyI	GAGTC	4 cut(s)	32, 1834, 1919, 3304
MmeI	TCCRAC	5 cut(s)	378, 897, 936, 1095, 1956
Mox20I	TGGCCA	4 cut(s)	5, 866, 970, 3352
Mph1103I	ATGCAT	2 cut(s)	2254, 2479
MreI	CGCCGGCG	1 cut(s)	430
MroNI	GCCGGC	3 cut(s)	185, 430, 504
MroXI	GAANNNNTTC	2 cut(s)	2146, 3366
MscI	TGGCCA	4 cut(s)	5, 866, 970, 3352
MslI	CAYNNNNRTG	3 cut(s)	404, 1197, 2933
Msp20I	TGGCCA	4 cut(s)	5, 866, 970, 3352
MspA1I	CMGCKG	3 cut(s)	511, 727, 3411
MspCI	CTTAAG	1 cut(s)	2525
MspI	CCGG	9 cut(s)	186, 431, 456, 505, 542, 557, 612, 1177, 3456
MspR9I	CCNGG	4 cut(s)	35, 2283, 2426, 3500
MunI	CAATTG	2 cut(s)	1899, 2628
Mva1269I	GAATGC	3 cut(s)	1248, 2722, 3465
MvaI	CCWGG	4 cut(s)	35, 2283, 2426, 3500
MvnI	CGCG	4 cut(s)	428, 501, 511, 727
NaeI	GCCGGC	3 cut(s)	187, 432, 506
NarI	GGCGCC	1 cut(s)	434
NcoI	CCATGG	1 cut(s)	2109
NdeI	CATATG	2 cut(s)	2461, 3301
NdeII	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
NgoMIV	GCCGGC	3 cut(s)	185, 430, 504
NlaIV	GGNNCC	7 cut(s)	435, 586, 1392, 1930, 3363, 3378, 3454
NmeAIII	GCCGAG	4 cut(s)	431, 717, 813, 993
NmuCI	GTSAC	2 cut(s)	1826, 2734
NotI	GCGGCCGC	1 cut(s)	722
NsiI	ATGCAT	2 cut(s)	2254, 2479
NspI	RCATGY	3 cut(s)	1974, 2339, 2477
NspV	TTCGAA	1 cut(s)	2131
OliI	CACNNNNGTG	1 cut(s)	404
PaeI	GCATGC	2 cut(s)	2339, 2477
PagI	TCATGA	4 cut(s)	1288, 1918, 3313, 3439
PciI	ACATGT	1 cut(s)	1970
PciSI	GCTCTTC	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 165, 363, 837
PctI	GAATGC	3 cut(s)	1248, 2722, 3465
PdiI	GCCGGC	3 cut(s)	187, 432, 506
PdmI	GAANNNNTTC	2 cut(s)	2146, 3366
PflFI	GACNNNGTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	2937
PleI	GAGTC	4 cut(s)	32, 1833, 1918, 3304
PluTI	GGCGCC	1 cut(s)	437
PpsI	GAGTC	4 cut(s)	32, 1833, 1918, 3304
PpuMI	RGGWCCY	1 cut(s)	2756
PscI	ACATGT	1 cut(s)	1970
PshBI	ATTAAT	1 cut(s)	2187
PsiI	TTATAA	1 cut(s)	1100
Psp124BI	GAGCTC	2 cut(s)	84, 1014
Psp5II	RGGWCCY	1 cut(s)	2756
Psp6I	CCWGG	4 cut(s)	33, 2281, 2424, 3498
PspGI	CCWGG	4 cut(s)	33, 2281, 2424, 3498
PspN4I	GGNNCC	7 cut(s)	435, 586, 1392, 1930, 3363, 3378, 3454
PspPI	GGNCC	3 cut(s)	1835, 2385, 2756
PspPPI	RGGWCCY	1 cut(s)	2756
PstNI	CAGNNNCTG	1 cut(s)	1958
PsuI	RGATCY	2 cut(s)	1390, 2657
PsyI	GACNNNGTC	1 cut(s)	41
PvuII	CAGCTG	1 cut(s)	3411
RigI	GGCCGGCC	1 cut(s)	508
RsaI	GTAC	5 cut(s)	413, 1870, 1951, 2137, 2542
RsaNI	GTAC	5 cut(s)	412, 1869, 1950, 2136, 2541
RseI	CAYNNNNRTG	3 cut(s)	404, 1197, 2933
SacI	GAGCTC	2 cut(s)	84, 1014
SacII	CCGCGG	2 cut(s)	512, 728
SalI	GTCGAC	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	350
Sau3AI	GATC	9 cut(s)	147, 304, 358, 1041, 1390, 2083, 2115, 2657, 3136
Sau96I	GGNCC	3 cut(s)	1835, 2385, 2756
ScaI	AGTACT	2 cut(s)	1870, 2137
SchI	GAGTC	4 cut(s)	32, 1834, 1919, 3304
ScrFI	CCNGG	4 cut(s)	35, 2283, 2426, 3500
SduI	GDGCHC	5 cut(s)	84, 589, 1014, 1671, 2025
SfaNI	GCATC	4 cut(s)	128, 1364, 2395, 2486
SfcI	CTRYAG	2 cut(s)	1755, 3530
SfoI	GGCGCC	1 cut(s)	435
Sfr303I	CCGCGG	2 cut(s)	512, 728
SfuI	TTCGAA	1 cut(s)	2131
SgrAI	CRCCGGYG	1 cut(s)	430
SgrBI	CCGCGG	2 cut(s)	512, 728
SinI	GGWCC	2 cut(s)	1835, 2756
SmiMI	CAYNNNNRTG	3 cut(s)	404, 1197, 2933
SmlI	CTYRAG	6 cut(s)	335, 1055, 2525, 2620, 2751, 3261
SmoI	CTYRAG	6 cut(s)	335, 1055, 2525, 2620, 2751, 3261
SphI	GCATGC	2 cut(s)	2339, 2477
SspDI	GGCGCC	1 cut(s)	433
SspI	AATATT	2 cut(s)	1207, 1538
SspMI	CTAG	2 cut(s)	978, 1749
SstI	GAGCTC	2 cut(s)	84, 1014
StyD4I	CCNGG	4 cut(s)	33, 2281, 2424, 3498
StyI	CCWWGG	1 cut(s)	2109
TaaI	ACNGT	8 cut(s)	10, 763, 878, 1688, 1756, 1937, 2212, 2734
TaiI	ACGT	5 cut(s)	144, 375, 834, 843, 3069
TatI	WGTACW	4 cut(s)	411, 1868, 1949, 2135
TauI	GCSGC	9 cut(s)	195, 318, 428, 504, 511, 551, 724, 727, 770
TseFI	GTSAC	2 cut(s)	1826, 2734
TseI	GCWGC	8 cut(s)	189, 340, 569, 1302, 2079, 2677, 2691, 2944
Tsp45I	GTSAC	2 cut(s)	1826, 2734
TspGWI	ACGGA	3 cut(s)	31, 157, 508
Tth111I	GACNNNGTC	1 cut(s)	41
Van91I	CCANNNNNTGG	1 cut(s)	2937
Vha464I	CTTAAG	1 cut(s)	2525
VpaK11BI	GGWCC	2 cut(s)	1835, 2756
VspI	ATTAAT	1 cut(s)	2187
XapI	RAATTY	6 cut(s)	1183, 1428, 1564, 2127, 2746, 2968
XceI	RCATGY	3 cut(s)	1974, 2339, 2477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2209
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	2 cut(s)	2146, 3366
XspI	CTAG	2 cut(s)	978, 1749
ZraI	GACGTC	1 cut(s)	841
ZrmI	AGTACT	2 cut(s)	1870, 2137
Zsp2I	ATGCAT	2 cut(s)	2254, 2479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.