methyl-CpG-binding domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 |
| malus_domestica | MD00G1009700.v1.1 MD08G1184300.v1.1 MD15G1370800.v1.1 |
| prunus_persica | Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 |
| pyrus_communis | pycom08g15800 |
| rosa_chinensis | RchiOBHm_Chr7g0238671 RchiOBHm_Chr7g0243951 RchiOBHm_Chr7g0243961 |
| rosa_laevigata | RLG00000000820 |
| rosa_multiflora | Rmu_sc0006110.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00221630 |
| rosa_rugosa | Rorug07G0322800 |
| rosa_samantha | Rh7AG477200 Rh7BG448500 Rh7CG495300 Rh7DG462200 |
| rosa_wichuraiana | Rw7G039830 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 284 |
| AatII | GACGTC | 1 cut(s) | 27 |
| Acc36I | ACCTGC | 1 cut(s) | 975 |
| AccB1I | GGYRCC | 1 cut(s) | 2560 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2121 |
| AciI | CCGC | 3 cut(s) | 56, 277, 562 |
| AclWI | GGATC | 2 cut(s) | 569, 582 |
| AcoI | YGGCCR | 2 cut(s) | 48, 2534 |
| AcsI | RAATTY | 6 cut(s) | 367, 612, 748, 1311, 1930, 2152 |
| AcuI | CTGAAG | 1 cut(s) | 1041 |
| AcyI | GRCGYC | 1 cut(s) | 24 |
| AdeI | CACNNNGTG | 1 cut(s) | 2121 |
| AfaI | GTAC | 4 cut(s) | 1054, 1135, 1321, 1726 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1352, 1721, 2121, 2226 |
| AflII | CTTAAG | 1 cut(s) | 1709 |
| AflIII | ACRYGT | 1 cut(s) | 1154 |
| AhlI | ACTAGT | 1 cut(s) | 440 |
| AjnI | CCWGG | 4 cut(s) | 1465, 1608, 2077, 2682 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 578, 610 |
| Alw21I | GWGCWC | 1 cut(s) | 198 |
| Alw26I | GTCTC | 5 cut(s) | 98, 240, 1019, 1101, 2486 |
| AlwI | GGATC | 2 cut(s) | 569, 582 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1142 |
| AoxI | GGCC | 6 cut(s) | 48, 1225, 1569, 1808, 2169, 2534 |
| ApeKI | GCWGC | 5 cut(s) | 486, 1263, 1861, 1875, 2128 |
| ApoI | RAATTY | 6 cut(s) | 367, 612, 748, 1311, 1930, 2152 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 50, 82, 740, 772, 2465, 2497 |
| AseI | ATTAAT | 1 cut(s) | 1371 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1330 |
| AspLEI | GCGC | 1 cut(s) | 115 |
| AspS9I | GGNCC | 3 cut(s) | 1019, 1569, 1940 |
| AsuHPI | GGTGA | 2 cut(s) | 22, 914 |
| AsuII | TTCGAA | 1 cut(s) | 1315 |
| AvaII | GGWCC | 2 cut(s) | 1019, 1940 |
| BaeGI | GKGCMC | 1 cut(s) | 855 |
| BalI | TGGCCA | 2 cut(s) | 50, 2536 |
| BamHI | GGATCC | 1 cut(s) | 574 |
| BanI | GGYRCC | 1 cut(s) | 2560 |
| BanII | GRGCYC | 2 cut(s) | 198, 1209 |
| BbsI | GAAGAC | 1 cut(s) | 1253 |
| Bbv12I | GWGCWC | 1 cut(s) | 198 |
| BbvI | GCAGC | 5 cut(s) | 473, 1275, 1848, 1887, 2140 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1650, 1684, 2538, 2572 |
| BciT130I | CCWGG | 4 cut(s) | 1467, 1610, 2079, 2684 |
| BcoDI | GTCTC | 5 cut(s) | 98, 240, 1019, 1101, 2486 |
| BcuI | ACTAGT | 1 cut(s) | 440 |
| BfaI | CTAG | 3 cut(s) | 162, 441, 933 |
| BfmI | CTRYAG | 2 cut(s) | 939, 2714 |
| BfrI | CTTAAG | 1 cut(s) | 1709 |
| BfuAI | ACCTGC | 1 cut(s) | 975 |
| BglII | AGATCT | 1 cut(s) | 1841 |
| BisI | GCNGC | 5 cut(s) | 487, 1264, 1862, 1876, 2129 |
| BlsI | GCNGC | 5 cut(s) | 488, 1265, 1863, 1877, 2130 |
| BmcAI | AGTACT | 2 cut(s) | 1054, 1321 |
| Bme1390I | CCNGG | 4 cut(s) | 1467, 1610, 2079, 2684 |
| Bme18I | GGWCC | 2 cut(s) | 1019, 1940 |
| BmgT120I | GGNCC | 3 cut(s) | 1019, 1569, 1940 |
| BmiI | GGNNCC | 3 cut(s) | 576, 2562, 2638 |
| BmrFI | CCNGG | 4 cut(s) | 1467, 1610, 2079, 2684 |
| BmrI | ACTGGG | 1 cut(s) | 1380 |
| BmsI | GCATC | 4 cut(s) | 31, 548, 1670, 1873 |
| BmuI | ACTGGG | 1 cut(s) | 1380 |
| BpiI | GAAGAC | 1 cut(s) | 1253 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2225 |
| Bpu14I | TTCGAA | 1 cut(s) | 1315 |
| BpuEI | CTTGAG | 4 cut(s) | 224, 1789, 1920, 2430 |
| BsaHI | GRCGYC | 1 cut(s) | 24 |
| BsaJI | CCNNGG | 5 cut(s) | 1293, 1465, 2077, 2139, 2683 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 293, 323, 2224, 2254 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1352, 1721, 2121, 2226 |
| Bse1I | ACTGG | 8 cut(s) | 155, 361, 623, 1327, 1386, 1579, 1987, 2656 |
| Bse3DI | GCAATG | 1 cut(s) | 1696 |
| BseBI | CCWGG | 4 cut(s) | 1467, 1610, 2079, 2684 |
| BseDI | CCNNGG | 5 cut(s) | 1293, 1465, 2077, 2139, 2683 |
| BseGI | GGATG | 5 cut(s) | 46, 602, 1357, 1799, 1864 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1352, 1721, 2121, 2226 |
| BseMI | GCAATG | 1 cut(s) | 1696 |
| BseMII | CTCAG | 5 cut(s) | 99, 855, 1014, 2019, 2709 |
| BseNI | ACTGG | 8 cut(s) | 155, 361, 623, 1327, 1386, 1579, 1987, 2656 |
| BseRI | GAGGAG | 3 cut(s) | 89, 779, 1844 |
| BseSI | GKGCMC | 1 cut(s) | 855 |
| BseXI | GCAGC | 5 cut(s) | 473, 1275, 1848, 1887, 2140 |
| BsgI | GTGCAG | 3 cut(s) | 203, 2268, 2626 |
| BshFI | GGCC | 6 cut(s) | 50, 1227, 1571, 1810, 2171, 2536 |
| BshNI | GGYRCC | 1 cut(s) | 2560 |
| BsiHKAI | GWGCWC | 1 cut(s) | 198 |
| BsiSI | CCGG | 1 cut(s) | 2640 |
| BslFI | GGGAC | 3 cut(s) | 161, 613, 2018 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1352, 1721, 2121, 2226 |
| BsmAI | GTCTC | 5 cut(s) | 98, 240, 1019, 1101, 2486 |
| BsmFI | GGGAC | 3 cut(s) | 161, 613, 2018 |
| BsmI | GAATGC | 3 cut(s) | 432, 1906, 2649 |
| BsnI | GGCC | 6 cut(s) | 50, 1227, 1571, 1810, 2171, 2536 |
| Bsp119I | TTCGAA | 1 cut(s) | 1315 |
| Bsp1286I | GDGCHC | 3 cut(s) | 198, 855, 1209 |
| Bsp143I | GATC | 6 cut(s) | 225, 574, 1267, 1299, 1841, 2320 |
| Bsp19I | CCATGG | 1 cut(s) | 1293 |
| BspACI | CCGC | 3 cut(s) | 56, 277, 562 |
| BspANI | GGCC | 6 cut(s) | 50, 1227, 1571, 1810, 2171, 2536 |
| BspCNI | CTCAG | 5 cut(s) | 100, 854, 1015, 2018, 2708 |
| BspHI | TCATGA | 4 cut(s) | 472, 1102, 2497, 2623 |
| BspLI | GGNNCC | 3 cut(s) | 576, 2562, 2638 |
| BspMI | ACCTGC | 1 cut(s) | 975 |
| BspPI | GGATC | 2 cut(s) | 569, 582 |
| BspT104I | TTCGAA | 1 cut(s) | 1315 |
| BspT107I | GGYRCC | 1 cut(s) | 2560 |
| BspTI | CTTAAG | 1 cut(s) | 1709 |
| BsrDI | GCAATG | 1 cut(s) | 1696 |
| BsrI | ACTGG | 8 cut(s) | 155, 361, 623, 1327, 1386, 1579, 1987, 2656 |
| BssECI | CCNNGG | 5 cut(s) | 1293, 1465, 2077, 2139, 2683 |
| BssMI | GATC | 6 cut(s) | 225, 574, 1267, 1299, 1841, 2320 |
| BssNI | GRCGYC | 1 cut(s) | 24 |
| BssT1I | CCWWGG | 1 cut(s) | 1293 |
| Bst2UI | CCWGG | 4 cut(s) | 1467, 1610, 2079, 2684 |
| Bst4CI | ACNGT | 7 cut(s) | 62, 872, 940, 1030, 1121, 1396, 1918 |
| Bst6I | CTCTTC | 3 cut(s) | 80, 164, 1104 |
| BstACI | GRCGYC | 1 cut(s) | 24 |
| BstAFI | CTTAAG | 1 cut(s) | 1709 |
| BstBI | TTCGAA | 1 cut(s) | 1315 |
| BstC8I | GCNNGC | 8 cut(s) | 186, 1066, 1070, 1429, 1521, 1659, 2053, 2579 |
| BstDEI | CTNAG | 7 cut(s) | 108, 841, 1023, 2005, 2047, 2225, 2695 |
| BstDSI | CCRYGG | 1 cut(s) | 1293 |
| BstF5I | GGATG | 5 cut(s) | 46, 602, 1357, 1799, 1864 |
| BstHHI | GCGC | 1 cut(s) | 115 |
| BstKTI | GATC | 6 cut(s) | 228, 577, 1270, 1302, 1844, 2323 |
| BstMAI | GTCTC | 5 cut(s) | 98, 240, 1019, 1101, 2486 |
| BstMBI | GATC | 6 cut(s) | 225, 574, 1267, 1299, 1841, 2320 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 1433, 1626, 1646, 1881, 2348, 2425, 2560 |
| BstNI | CCWGG | 4 cut(s) | 1467, 1610, 2079, 2684 |
| BstNSI | RCATGY | 3 cut(s) | 1158, 1523, 1661 |
| BstSCI | CCNGG | 4 cut(s) | 1465, 1608, 2077, 2682 |
| BstSFI | CTRYAG | 2 cut(s) | 939, 2714 |
| BstSLI | GKGCMC | 1 cut(s) | 855 |
| BstV1I | GCAGC | 5 cut(s) | 473, 1275, 1848, 1887, 2140 |
| BstV2I | GAAGAC | 1 cut(s) | 1253 |
| BstX2I | RGATCY | 2 cut(s) | 574, 1841 |
| BstYI | RGATCY | 2 cut(s) | 574, 1841 |
| BsuRI | GGCC | 6 cut(s) | 50, 1227, 1571, 1810, 2171, 2536 |
| BtgI | CCRYGG | 1 cut(s) | 1293 |
| BtsCI | GGATG | 5 cut(s) | 46, 602, 1357, 1799, 1864 |
| BtsI | GCAGTG | 2 cut(s) | 1891, 2549 |
| BveI | ACCTGC | 1 cut(s) | 975 |
| Cac8I | GCNNGC | 8 cut(s) | 186, 1066, 1070, 1429, 1521, 1659, 2053, 2579 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1142 |
| CciI | TCATGA | 4 cut(s) | 472, 1102, 2497, 2623 |
| CfoI | GCGC | 1 cut(s) | 115 |
| Cfr13I | GGNCC | 3 cut(s) | 1019, 1569, 1940 |
| Csp6I | GTAC | 4 cut(s) | 1053, 1134, 1320, 1725 |
| CviQI | GTAC | 4 cut(s) | 1053, 1134, 1320, 1725 |
| DdeI | CTNAG | 7 cut(s) | 108, 841, 1023, 2005, 2047, 2225, 2695 |
| DpnI | GATC | 6 cut(s) | 227, 576, 1269, 1301, 1843, 2322 |
| DpnII | GATC | 6 cut(s) | 225, 574, 1267, 1299, 1841, 2320 |
| DraI | TTTAAA | 1 cut(s) | 2187 |
| DraIII | CACNNNGTG | 1 cut(s) | 2121 |
| EaeI | YGGCCR | 2 cut(s) | 48, 2534 |
| Eam1104I | CTCTTC | 3 cut(s) | 80, 164, 1104 |
| EarI | CTCTTC | 3 cut(s) | 80, 164, 1104 |
| Ecl136II | GAGCTC | 1 cut(s) | 196 |
| Eco130I | CCWWGG | 1 cut(s) | 1293 |
| Eco24I | GRGCYC | 2 cut(s) | 198, 1209 |
| Eco32I | GATATC | 1 cut(s) | 709 |
| Eco47I | GGWCC | 2 cut(s) | 1019, 1940 |
| Eco53kI | GAGCTC | 1 cut(s) | 196 |
| Eco57I | CTGAAG | 1 cut(s) | 1041 |
| EcoICRI | GAGCTC | 1 cut(s) | 196 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1940 |
| EcoRI | GAATTC | 2 cut(s) | 748, 1311 |
| EcoRII | CCWGG | 4 cut(s) | 1465, 1608, 2077, 2682 |
| EcoRV | GATATC | 1 cut(s) | 709 |
| EcoT14I | CCWWGG | 1 cut(s) | 1293 |
| EcoT22I | ATGCAT | 2 cut(s) | 46, 1663 |
| EcoT38I | GRGCYC | 2 cut(s) | 198, 1209 |
| ErhI | CCWWGG | 1 cut(s) | 1293 |
| FaqI | GGGAC | 3 cut(s) | 161, 613, 2018 |
| FauNDI | CATATG | 2 cut(s) | 1645, 2485 |
| Fnu4HI | GCNGC | 5 cut(s) | 487, 1264, 1862, 1876, 2129 |
| FokI | GGATG | 5 cut(s) | 53, 589, 1364, 1786, 1851 |
| FriOI | GRGCYC | 2 cut(s) | 198, 1209 |
| Fsp4HI | GCNGC | 5 cut(s) | 487, 1264, 1862, 1876, 2129 |
| FspBI | CTAG | 3 cut(s) | 162, 441, 933 |
| GlaI | GCGC | 1 cut(s) | 114 |
| GluI | GCNGC | 5 cut(s) | 487, 1264, 1862, 1876, 2129 |
| HaeIII | GGCC | 6 cut(s) | 50, 1227, 1571, 1810, 2171, 2536 |
| HapII | CCGG | 1 cut(s) | 2640 |
| HhaI | GCGC | 1 cut(s) | 115 |
| Hin1I | GRCGYC | 1 cut(s) | 24 |
| Hin6I | GCGC | 1 cut(s) | 113 |
| HinP1I | GCGC | 1 cut(s) | 113 |
| HincII | GTYRAC | 1 cut(s) | 1042 |
| HindII | GTYRAC | 1 cut(s) | 1042 |
| HpaII | CCGG | 1 cut(s) | 2640 |
| HphI | GGTGA | 2 cut(s) | 22, 914 |
| Hpy166II | GTNNAC | 4 cut(s) | 13, 19, 1042, 1889 |
| Hpy8I | GTNNAC | 4 cut(s) | 13, 19, 1042, 1889 |
| Hpy99I | CGWCG | 2 cut(s) | 26, 29 |
| HpyAV | CCTTC | 7 cut(s) | 128, 1089, 1496, 1953, 2387, 2536, 2565 |
| HpyCH4III | ACNGT | 7 cut(s) | 62, 872, 940, 1030, 1121, 1396, 1918 |
| HpyCH4IV | ACGT | 3 cut(s) | 15, 24, 2250 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 1433, 1626, 1646, 1881, 2348, 2425, 2560 |
| HpyF3I | CTNAG | 7 cut(s) | 108, 841, 1023, 2005, 2047, 2225, 2695 |
| HpySE526I | ACGT | 3 cut(s) | 15, 24, 2250 |
| Hsp92I | GRCGYC | 1 cut(s) | 24 |
| HspAI | GCGC | 1 cut(s) | 113 |
| Kzo9I | GATC | 6 cut(s) | 225, 574, 1267, 1299, 1841, 2320 |
| LmnI | GCTCC | 6 cut(s) | 494, 766, 902, 2125, 2348, 2636 |
| Lsp1109I | GCAGC | 5 cut(s) | 473, 1275, 1848, 1887, 2140 |
| LweI | GCATC | 4 cut(s) | 31, 548, 1670, 1873 |
| MaeI | CTAG | 3 cut(s) | 162, 441, 933 |
| MaeII | ACGT | 3 cut(s) | 15, 24, 2250 |
| MaeIII | GTNAC | 2 cut(s) | 1010, 1918 |
| MalI | GATC | 6 cut(s) | 227, 576, 1269, 1301, 1843, 2322 |
| MboI | GATC | 6 cut(s) | 225, 574, 1267, 1299, 1841, 2320 |
| MfeI | CAATTG | 2 cut(s) | 1083, 1812 |
| MflI | RGATCY | 2 cut(s) | 574, 1841 |
| MhlI | GDGCHC | 3 cut(s) | 198, 855, 1209 |
| MlsI | TGGCCA | 2 cut(s) | 50, 2536 |
| MluNI | TGGCCA | 2 cut(s) | 50, 2536 |
| MlyI | GAGTC | 4 cut(s) | 1018, 1103, 2040, 2488 |
| MmeI | TCCRAC | 3 cut(s) | 81, 120, 279 |
| Mox20I | TGGCCA | 2 cut(s) | 50, 2536 |
| Mph1103I | ATGCAT | 2 cut(s) | 46, 1663 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1330 |
| MscI | TGGCCA | 2 cut(s) | 50, 2536 |
| MslI | CAYNNNNRTG | 1 cut(s) | 381 |
| Msp20I | TGGCCA | 2 cut(s) | 50, 2536 |
| MspA1I | CMGCKG | 1 cut(s) | 2595 |
| MspCI | CTTAAG | 1 cut(s) | 1709 |
| MspI | CCGG | 1 cut(s) | 2640 |
| MspR9I | CCNGG | 4 cut(s) | 1467, 1610, 2079, 2684 |
| MunI | CAATTG | 2 cut(s) | 1083, 1812 |
| Mva1269I | GAATGC | 3 cut(s) | 432, 1906, 2649 |
| MvaI | CCWGG | 4 cut(s) | 1467, 1610, 2079, 2684 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 1433, 1626, 1646, 1881, 2348, 2425, 2560 |
| NcoI | CCATGG | 1 cut(s) | 1293 |
| NdeI | CATATG | 2 cut(s) | 1645, 2485 |
| NdeII | GATC | 6 cut(s) | 225, 574, 1267, 1299, 1841, 2320 |
| NlaIV | GGNNCC | 3 cut(s) | 576, 2562, 2638 |
| NmeAIII | GCCGAG | 1 cut(s) | 177 |
| NmuCI | GTSAC | 2 cut(s) | 1010, 1918 |
| NsiI | ATGCAT | 2 cut(s) | 46, 1663 |
| NspI | RCATGY | 3 cut(s) | 1158, 1523, 1661 |
| NspV | TTCGAA | 1 cut(s) | 1315 |
| PaeI | GCATGC | 2 cut(s) | 1523, 1661 |
| PagI | TCATGA | 4 cut(s) | 472, 1102, 2497, 2623 |
| PciI | ACATGT | 1 cut(s) | 1154 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 21 |
| PctI | GAATGC | 3 cut(s) | 432, 1906, 2649 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1330 |
| PfeI | GAWTC | 7 cut(s) | 743, 1184, 1289, 1381, 2192, 2210, 2468 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2121 |
| PkrI | GCNGC | 5 cut(s) | 488, 1265, 1863, 1877, 2130 |
| PleI | GAGTC | 4 cut(s) | 1017, 1102, 2039, 2488 |
| PpsI | GAGTC | 4 cut(s) | 1017, 1102, 2039, 2488 |
| PpuMI | RGGWCCY | 1 cut(s) | 1940 |
| PscI | ACATGT | 1 cut(s) | 1154 |
| PshBI | ATTAAT | 1 cut(s) | 1371 |
| PsiI | TTATAA | 1 cut(s) | 284 |
| Psp124BI | GAGCTC | 1 cut(s) | 198 |
| Psp5II | RGGWCCY | 1 cut(s) | 1940 |
| Psp6I | CCWGG | 4 cut(s) | 1465, 1608, 2077, 2682 |
| PspGI | CCWGG | 4 cut(s) | 1465, 1608, 2077, 2682 |
| PspN4I | GGNNCC | 3 cut(s) | 576, 2562, 2638 |
| PspPI | GGNCC | 3 cut(s) | 1019, 1569, 1940 |
| PspPPI | RGGWCCY | 1 cut(s) | 1940 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1142 |
| PsuI | RGATCY | 2 cut(s) | 574, 1841 |
| PvuII | CAGCTG | 1 cut(s) | 2595 |
| RsaI | GTAC | 4 cut(s) | 1054, 1135, 1321, 1726 |
| RsaNI | GTAC | 4 cut(s) | 1053, 1134, 1320, 1725 |
| RseI | CAYNNNNRTG | 1 cut(s) | 381 |
| SacI | GAGCTC | 1 cut(s) | 198 |
| SatI | GCNGC | 5 cut(s) | 487, 1264, 1862, 1876, 2129 |
| Sau3AI | GATC | 6 cut(s) | 225, 574, 1267, 1299, 1841, 2320 |
| Sau96I | GGNCC | 3 cut(s) | 1019, 1569, 1940 |
| ScaI | AGTACT | 2 cut(s) | 1054, 1321 |
| SchI | GAGTC | 4 cut(s) | 1018, 1103, 2040, 2488 |
| ScrFI | CCNGG | 4 cut(s) | 1467, 1610, 2079, 2684 |
| SduI | GDGCHC | 3 cut(s) | 198, 855, 1209 |
| SfaNI | GCATC | 4 cut(s) | 31, 548, 1670, 1873 |
| SfcI | CTRYAG | 2 cut(s) | 939, 2714 |
| SfuI | TTCGAA | 1 cut(s) | 1315 |
| SinI | GGWCC | 2 cut(s) | 1019, 1940 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 381 |
| SmlI | CTYRAG | 5 cut(s) | 239, 1709, 1804, 1935, 2445 |
| SmoI | CTYRAG | 5 cut(s) | 239, 1709, 1804, 1935, 2445 |
| SpeI | ACTAGT | 1 cut(s) | 440 |
| SphI | GCATGC | 2 cut(s) | 1523, 1661 |
| SsiI | CCGC | 3 cut(s) | 56, 277, 562 |
| SspI | AATATT | 3 cut(s) | 391, 722, 913 |
| SspMI | CTAG | 3 cut(s) | 162, 441, 933 |
| SstI | GAGCTC | 1 cut(s) | 198 |
| StyD4I | CCNGG | 4 cut(s) | 1465, 1608, 2077, 2682 |
| StyI | CCWWGG | 1 cut(s) | 1293 |
| TaaI | ACNGT | 7 cut(s) | 62, 872, 940, 1030, 1121, 1396, 1918 |
| TaiI | ACGT | 3 cut(s) | 18, 27, 2253 |
| TaqI | TCGA | 3 cut(s) | 746, 1315, 2405 |
| TatI | WGTACW | 3 cut(s) | 1052, 1133, 1319 |
| TfiI | GAWTC | 7 cut(s) | 743, 1184, 1289, 1381, 2192, 2210, 2468 |
| TseFI | GTSAC | 2 cut(s) | 1010, 1918 |
| TseI | GCWGC | 5 cut(s) | 486, 1263, 1861, 1875, 2128 |
| Tsp45I | GTSAC | 2 cut(s) | 1010, 1918 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2121 |
| Vha464I | CTTAAG | 1 cut(s) | 1709 |
| VpaK11BI | GGWCC | 2 cut(s) | 1019, 1940 |
| VspI | ATTAAT | 1 cut(s) | 1371 |
| XapI | RAATTY | 6 cut(s) | 367, 612, 748, 1311, 1930, 2152 |
| XceI | RCATGY | 3 cut(s) | 1158, 1523, 1661 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1393 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1330 |
| XspI | CTAG | 3 cut(s) | 162, 441, 933 |
| ZraI | GACGTC | 1 cut(s) | 25 |
| ZrmI | AGTACT | 2 cut(s) | 1054, 1321 |
| Zsp2I | ATGCAT | 2 cut(s) | 46, 1663 |