Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003067

Physical Location & Seq

Genomic Coordinates Forward (+)

66802893 .. 66808176

Gene Structure 5284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG477200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3555 bp

ATGGCCACCGTCGACGACCACCACCTCCTCCACCTAGACTCCGTCCCCGTCGTCGACCTCCGCCTCCTCACCCAATCCGAGCTTTACTCCCTCTCCCTCTCCTCCTCCTCCTCCTCCGCATCTCACCGCTTCGACGACGACGTTTTGATCCCCAAAATCGACCGCTCCGTCTTCAACGAATCCGCCGGCAGCCGCAAACAGACCTACTCCCGCCTCCGCCTCGCCCCTCGCAACTCCCAATTCGCCTCCTCCTCCAATTCCAAATCTGCCCTCCCTCCCTCCCACCTCCTCCTCTCCCAGCCGCTCGATCGCGAGAGCCGCCAGATTATCTCGCTCCTCAAGCAGCTCTTCCCCTCCGACGATCAAAACGACGACGTCCTCCTCCCCCAAACCACCACCACCACCACCACCACCACCACCCCCGTGCAGTACAAAATCCCCGCCGCGCCGACGCCTTCCTTCATCGCCTCGGCCGGTGCCGTTTCCGGCGTCGATTCCTCGCTCGGGAAACGGAAGCGCGGCCGGCCGCGGAAGGATTCCAACGCCGTGATTGCGAAACCGGAGGCCGCCGCTGTGCCGGTCAGCTCTGCTGCGTTGGCTGGCGGTGCCGGCGAGGCTGAGGATGGCAATGCCGGTGTTTTGATTGAGAAGCGTGACGGTGGAGCTACGGCGGTTGGGACTTTTGTGCTGAATAGCGAAGGACAGCTTGTGCCGAGTAGCGCGGGGAAGAGGAAGCGAGGGCGGCCGCGGAAGGATGAGATTAGGGTTAGGGATGAGAGTACAGTGGCGGCTTCGGTGAGGAAACCGCCGAGAGTGAAGAAGGAGGAGGATGGAGAGATGGTGCTGGTGAACGTGAACGACGTCGTTGTGGATTTGGATGCATTGGCCAATGCGGACAGTGTGTTTGGGGAGGAGTTGAGGAAGAGGACAGAGGGGTTGGAGACTGAGGCGCAGTTGTTAGGGTTTCTGGAAGGGTTGGAGGGGGACTGGTCAAGTGCTAGGAAGAAGAGGAAGATTGTGCAGGCGAGTGAGCTCGGCGACTTGTTGCCGAAGTGGTGGAAGATCATGCTGTCTCTCAAGAGGAATGGAGGTCATAAATGGATTGTGTGTAGGCGGTTTATAAGCCCTAATGGGTTGGAGTTTGTGTCGTGCAAGGAAGTTTCTTCATACTTGCACTCTTATTTTGGACTTGGAAGCCAGTCAAATTCTGTTCATACCGATGGGAATATTCAGGTTTCTAATAAAATGGTTTTGGGAGATGGAATGCAACATGATACTAGTTTTACCTATAAAGATAACAACAATGGTCATGAGCTTCTTCGCTGCTCCCCAATGCCCATTACCTCTATGAACAGCTATGTCAAGAGCATTGAAGCATCAGGAGAAGTAATGGGTATGCGGAAAAAATTGGATCCTGTAAAGAATGGTCGTTTGGGGACATCCTTGAAAATTCAAGAACCAGTTGAGATAGATGGGGAACAAACTTCTGATATGATAGCCAACTATGATTTGAGTTCTGATTTCTCTCTGGGTAAGGTAAATGATATCATGGCAAAATATTTTGGCATATCCAATGATGAATCGAATTCAATGTCCTGTGAGGAGCAAGTGATGATGGCTGACAAAACAATTTGCTTTTCTGATGGATTAAATGATGGTGTCAGGGTTGCCATCAGCTCAGTTGATGTGCCCAAAGTGGAGATAGACAGTGCTTCAAATGACATGGGAAAAGAACATGGAGCTGACAATATTGATAATCACCAATCAACTAGCACTGTAGATGATATGAAAATTGATGATGTGGATAATTGTAGGAATGGCAGGTCAATATCTGGTATTAGTGAGAGTCACATTGGACCTGAGACTGTATATAATGTTGACCAACAAAGTACTTCAGAAGCCTGCTCGCTTGTTCCTTCAATTGTGATGGAGTCTCTTCATGAAAGAGGTTCAGACAGTGGTTTATATAGTACAGCCACTGATGAGAAAACATGTGTTGTCAGTAATAACTTCAATAATGATTCATTCCCCACATTTTATGAGCCCAGATTTGATGATATTGGCCTATCTGGGAGTAATGAGAAGACATTTTGTTTTGGCAGCGATCATGCTATGCCAGATGTAGATTCCATGGAGATCAGTGTGCGAATTCGAAGTACTGGAAGCTATTCAAATGTTCCACCTCTGGATGGACATAGTTGTATTATTAATGCAACGAATCCCAGTTGCACAGTGGAAGAACTCTTGCAGGACAAGAGGTTAGCAAGCAACGCATTTAATTCATTTGTTAATAAGCAGACCCCTGGTAATCTAAATAAGGGTGCTATTCATACAGCAGAAGGGCATAAAGTTGAGCATGCCAAAAATTATGACAATAGTGAGTTAAGTGTTAATTTTGGTAGCAGGGCCACTGGAACTAATGCAGATACTACCTCTTGCATTGACCAGGAAAGAAGCTCTAAAGGCTATTCTCTTGCTTCATATGCGAACGAGCATGCATCTGTTTCGGAAAATAGTTTTGTCTGCAATGGCATTTTGGAAGAACTTAAGCCCGATAGAGGTACTTCTGAAACTGATTTGGTTTGCCCATCGGAATATCAACAAGGATATAATCTGGTAAATCATGCAAACAACACATCCTCAAGGCCAATTGAAGTATTAAAAGAGGAGGTTAAAAGATCTTGGAATGATGAGGTGCTGCATCCTTTTGGCAGCAGTCGCAGTGGACAAGAAGCGAATGCTATGAGTAGCACTGTGACCTCAATAAATTCTCAAGGACCTTCCCTTGTTATTTCGGGGGATAACCAATCATTTGCTACTGGCTCTGGCATATTTAGTAGCTCAGTATTGGACGATAAGCTGATAAGAGTCCCTGTTAATGACTTAGCACGCCCAAGTGGTAGTGAGCAAACCCCTGGTTTTGTAAATAATCTGAACAGGATTTATAGCACCACATCGTGGGAGCAGCCTAAATCCGAGGTTGCAGAAAATTCAAGGAACAATGAGGCCATCAATGGTTTTTTAAATGATTCCCAACCTACTGCCGATTCCATCTCCGAGCTTAGGTGGAGAAATGGTGGGCAAAACGTCCAGCAGAGTGCATTGGCTGACAATTCTTCTGCACTTATGCCATCATCTGTCAGTTATCCGAACTTTGATCTGCTGTCAAGCAAGGGTGCAAATGGAGCTTTGAGCATAAGTGAAAAGTTTGACAACACTTCATGTTTGGAAGGATTAAAGTCGAGTAGTTTAGAGCAGTTTGAGCATGACTTTCTGACTGCTCAAGCAACCTATCAGTCAAAGGAATCAAATGTGTTGTCATATGATGAGACTCATGAGAGTATAGAGCAAGGTTTCAATTCATCTGGTTGGCCAGAGAAGGAAGCACTGCCTTCGGTGCCAAATATAGAAAGCAGGCGTGAGATTAACAGCTGTGTCTGGTGCAGAAATGAGTTTTATCATGATGTTTATGGAGCCGGAATGCAAACTGGTTCAGTGGGTTTTATGTGTGCAAACTGCCAGGGCAAGTTCTCAGGTCATGTCGGTTTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook MBD

Protein Analysis

1184

Amino Acids

128.57

Weight (kDa)

5.06

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003067)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120 FvH4_5g37120
malus_domestica	MD00G1009700.v1.1 MD08G1184300.v1.1 MD15G1370800.v1.1
prunus_persica	Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1 Prupe.1G518500_v2.0.a1
pyrus_communis	pycom08g15800
rosa_chinensis	RchiOBHm_Chr7g0238671 RchiOBHm_Chr7g0243951 RchiOBHm_Chr7g0243961
rosa_laevigata	RLG00000000820
rosa_multiflora	Rmu_sc0006110.1_g000008
rosa_roxburghii	Rroxscaffold_3G00221630
rosa_rugosa	Rorug07G0322800
rosa_samantha	Rh7AG477200 Rh7BG448500 Rh7CG495300 Rh7DG462200
rosa_wichuraiana	Rw7G039830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1121
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	2 cut(s)	378, 864
Acc36I	ACCTGC	1 cut(s)	1812
AccB1I	GGYRCC	3 cut(s)	476, 605, 3397
AccB7I	CCANNNNNTGG	1 cut(s)	2958
AccBSI	CCGCTC	2 cut(s)	165, 304
AccI	GTMKAC	2 cut(s)	12, 54
AccII	CGCG	6 cut(s)	312, 446, 519, 529, 722, 748
AclWI	GGATC	3 cut(s)	142, 1406, 1419
AcoI	YGGCCR	7 cut(s)	3, 471, 520, 524, 743, 885, 3371
AcsI	RAATTY	6 cut(s)	1204, 1449, 1585, 2148, 2767, 2989
AcuI	CTGAAG	1 cut(s)	1878
AcyI	GRCGYC	4 cut(s)	375, 452, 489, 861
AdeI	CACNNNGTG	1 cut(s)	2958
AfaI	GTAC	6 cut(s)	431, 781, 1891, 1972, 2158, 2563
AfiI	CCNNNNNNNGG	5 cut(s)	504, 2189, 2558, 2958, 3063
AflII	CTTAAG	1 cut(s)	2546
AflIII	ACRYGT	1 cut(s)	1991
AhlI	ACTAGT	1 cut(s)	1277
AjnI	CCWGG	4 cut(s)	2302, 2445, 2914, 3519
AjuI	GAANNNNNNNTTGG	2 cut(s)	1415, 1447
AleI	CACNNNNGTG	1 cut(s)	422
Alw21I	GWGCWC	1 cut(s)	1035
Alw26I	GTCTC	5 cut(s)	935, 1077, 1856, 1938, 3323
AlwI	GGATC	3 cut(s)	142, 1406, 1419
AlwNI	CAGNNNCTG	1 cut(s)	1979
Ama87I	CYCGRG	1 cut(s)	503
ApeKI	GCWGC	8 cut(s)	189, 343, 590, 1323, 2100, 2698, 2712, 2965
ApoI	RAATTY	6 cut(s)	1204, 1449, 1585, 2148, 2767, 2989
ArsI	GACNNNNNNTTYG	6 cut(s)	887, 919, 1577, 1609, 3302, 3334
AseI	ATTAAT	1 cut(s)	2208
Asp700I	GAANNNNTTC	1 cut(s)	2167
AspLEI	GCGC	4 cut(s)	448, 519, 722, 952
AspS9I	GGNCC	3 cut(s)	1856, 2406, 2777
AsuHPI	GGTGA	5 cut(s)	61, 116, 808, 859, 1751
AsuII	TTCGAA	1 cut(s)	2152
AvaI	CYCGRG	1 cut(s)	503
AvaII	GGWCC	2 cut(s)	1856, 2777
BaeGI	GKGCMC	1 cut(s)	1692
BalI	TGGCCA	3 cut(s)	5, 887, 3373
BamHI	GGATCC	1 cut(s)	1411
BanI	GGYRCC	3 cut(s)	476, 605, 3397
BanII	GRGCYC	2 cut(s)	1035, 2046
BbsI	GAAGAC	2 cut(s)	163, 2090
Bbv12I	GWGCWC	1 cut(s)	1035
BbvCI	CCTCAGC	1 cut(s)	618
BbvI	GCAGC	8 cut(s)	201, 355, 577, 1310, 2112, 2685, 2724, 2977
BceAI	ACGGC	3 cut(s)	464, 530, 684
BcgI	CGANNNNNNTGC	4 cut(s)	2487, 2521, 3375, 3409
BciT130I	CCWGG	4 cut(s)	2304, 2447, 2916, 3521
BcoDI	GTCTC	5 cut(s)	935, 1077, 1856, 1938, 3323
BcuI	ACTAGT	1 cut(s)	1277
BfaI	CTAG	4 cut(s)	35, 999, 1278, 1770
BfmI	CTRYAG	2 cut(s)	1776, 3551
BfrI	CTTAAG	1 cut(s)	2546
BfuAI	ACCTGC	1 cut(s)	1812
BglI	GCCNNNNNGGC	1 cut(s)	614
BglII	AGATCT	1 cut(s)	2678
BmcAI	AGTACT	2 cut(s)	1891, 2158
Bme1390I	CCNGG	4 cut(s)	2304, 2447, 2916, 3521
Bme18I	GGWCC	2 cut(s)	1856, 2777
BmeT110I	CYCGRG	1 cut(s)	503
BmgT120I	GGNCC	3 cut(s)	1856, 2406, 2777
BmiI	GGNNCC	5 cut(s)	478, 607, 1413, 3399, 3475
BmrFI	CCNGG	4 cut(s)	2304, 2447, 2916, 3521
BmrI	ACTGGG	1 cut(s)	2217
BmsI	GCATC	5 cut(s)	128, 868, 1385, 2507, 2710
BmuI	ACTGGG	1 cut(s)	2217
BpiI	GAAGAC	2 cut(s)	163, 2090
BplI	GAGNNNNNCTC	2 cut(s)	71, 103
Bpu10I	CCTNAGC	2 cut(s)	618, 3062
Bpu14I	TTCGAA	1 cut(s)	2152
BpuEI	CTTGAG	5 cut(s)	323, 1061, 2626, 2757, 3267
BsaHI	GRCGYC	4 cut(s)	375, 452, 489, 861
BsaJI	CCNNGG	8 cut(s)	468, 527, 746, 2130, 2302, 2914, 2976, 3520
BsaWI	WCCGGW	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	5 cut(s)	504, 2189, 2558, 2958, 3063
Bse118I	RCCGGY	6 cut(s)	185, 473, 522, 577, 608, 632
Bse1I	ACTGG	8 cut(s)	992, 1198, 1460, 2164, 2223, 2416, 2824, 3493
Bse3DI	GCAATG	2 cut(s)	634, 2533
BseBI	CCWGG	4 cut(s)	2304, 2447, 2916, 3521
BseDI	CCNNGG	8 cut(s)	468, 527, 746, 2130, 2302, 2914, 2976, 3520
BseGI	GGATG	9 cut(s)	628, 760, 778, 835, 883, 1439, 2194, 2636, 2701
BseLI	CCNNNNNNNGG	5 cut(s)	504, 2189, 2558, 2958, 3063
BseMI	GCAATG	2 cut(s)	634, 2533
BseMII	CTCAG	6 cut(s)	609, 936, 1692, 1851, 2856, 3546
BseNI	ACTGG	8 cut(s)	992, 1198, 1460, 2164, 2223, 2416, 2824, 3493
BseSI	GKGCMC	1 cut(s)	1692
BseX3I	CGGCCG	4 cut(s)	471, 520, 524, 743
BseXI	GCAGC	8 cut(s)	201, 355, 577, 1310, 2112, 2685, 2724, 2977
BseYI	CCCAGC	1 cut(s)	297
BsgI	GTGCAG	4 cut(s)	446, 1040, 3105, 3463
Bsh1236I	CGCG	6 cut(s)	312, 446, 519, 529, 722, 748
Bsh1285I	CGRYCG	6 cut(s)	163, 310, 474, 523, 527, 746
BshNI	GGYRCC	3 cut(s)	476, 605, 3397
BsiEI	CGRYCG	6 cut(s)	163, 310, 474, 523, 527, 746
BsiHKAI	GWGCWC	1 cut(s)	1035
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	9 cut(s)	186, 474, 486, 523, 560, 578, 609, 633, 3477
BslFI	GGGAC	5 cut(s)	29, 691, 998, 1450, 2855
BslI	CCNNNNNNNGG	5 cut(s)	504, 2189, 2558, 2958, 3063
BsmAI	GTCTC	5 cut(s)	935, 1077, 1856, 1938, 3323
BsmFI	GGGAC	5 cut(s)	29, 691, 998, 1450, 2855
BsmI	GAATGC	3 cut(s)	1269, 2743, 3486
BsoBI	CYCGRG	1 cut(s)	503
Bsp119I	TTCGAA	1 cut(s)	2152
Bsp1286I	GDGCHC	3 cut(s)	1035, 1692, 2046
Bsp143I	GATC	9 cut(s)	147, 307, 361, 1062, 1411, 2104, 2136, 2678, 3157
Bsp19I	CCATGG	1 cut(s)	2130
Bsp68I	TCGCGA	1 cut(s)	312
BspCNI	CTCAG	6 cut(s)	610, 937, 1691, 1852, 2855, 3545
BspFNI	CGCG	6 cut(s)	312, 446, 519, 529, 722, 748
BspHI	TCATGA	4 cut(s)	1309, 1939, 3334, 3460
BspLI	GGNNCC	5 cut(s)	478, 607, 1413, 3399, 3475
BspMI	ACCTGC	1 cut(s)	1812
BspPI	GGATC	3 cut(s)	142, 1406, 1419
BspQI	GCTCTTC	1 cut(s)	353
BspT104I	TTCGAA	1 cut(s)	2152
BspT107I	GGYRCC	3 cut(s)	476, 605, 3397
BspTI	CTTAAG	1 cut(s)	2546
BsrBI	CCGCTC	2 cut(s)	165, 304
BsrDI	GCAATG	2 cut(s)	634, 2533
BsrFI	RCCGGY	6 cut(s)	185, 473, 522, 577, 608, 632
BsrI	ACTGG	8 cut(s)	992, 1198, 1460, 2164, 2223, 2416, 2824, 3493
BssAI	RCCGGY	6 cut(s)	185, 473, 522, 577, 608, 632
BssECI	CCNNGG	8 cut(s)	468, 527, 746, 2130, 2302, 2914, 2976, 3520
BssMI	GATC	9 cut(s)	147, 307, 361, 1062, 1411, 2104, 2136, 2678, 3157
BssNI	GRCGYC	4 cut(s)	375, 452, 489, 861
BssT1I	CCWWGG	1 cut(s)	2130
Bst2UI	CCWGG	4 cut(s)	2304, 2447, 2916, 3521
Bst6I	CTCTTC	5 cut(s)	353, 722, 917, 1001, 1941
BstACI	GRCGYC	4 cut(s)	375, 452, 489, 861
BstAFI	CTTAAG	1 cut(s)	2546
BstBI	TTCGAA	1 cut(s)	2152
BstDEI	CTNAG	8 cut(s)	618, 945, 1678, 1860, 2842, 2884, 3062, 3532
BstDSI	CCRYGG	3 cut(s)	527, 746, 2130
BstF5I	GGATG	9 cut(s)	628, 760, 778, 835, 883, 1439, 2194, 2636, 2701
BstFNI	CGCG	6 cut(s)	312, 446, 519, 529, 722, 748
BstHHI	GCGC	4 cut(s)	448, 519, 722, 952
BstKTI	GATC	9 cut(s)	150, 310, 364, 1065, 1414, 2107, 2139, 2681, 3160
BstMAI	GTCTC	5 cut(s)	935, 1077, 1856, 1938, 3323
BstMBI	GATC	9 cut(s)	147, 307, 361, 1062, 1411, 2104, 2136, 2678, 3157
BstMCI	CGRYCG	6 cut(s)	163, 310, 474, 523, 527, 746
BstNI	CCWGG	4 cut(s)	2304, 2447, 2916, 3521
BstNSI	RCATGY	3 cut(s)	1995, 2360, 2498
BstSCI	CCNGG	4 cut(s)	2302, 2445, 2914, 3519
BstSFI	CTRYAG	2 cut(s)	1776, 3551
BstSLI	GKGCMC	1 cut(s)	1692
BstUI	CGCG	6 cut(s)	312, 446, 519, 529, 722, 748
BstV1I	GCAGC	8 cut(s)	201, 355, 577, 1310, 2112, 2685, 2724, 2977
BstV2I	GAAGAC	2 cut(s)	163, 2090
BstX2I	RGATCY	2 cut(s)	1411, 2678
BstYI	RGATCY	2 cut(s)	1411, 2678
BstZI	CGGCCG	4 cut(s)	471, 520, 524, 743
BtgI	CCRYGG	3 cut(s)	527, 746, 2130
BtgZI	GCGATG	1 cut(s)	448
BtsCI	GGATG	9 cut(s)	628, 760, 778, 835, 883, 1439, 2194, 2636, 2701
BtsI	GCAGTG	2 cut(s)	2728, 3386
BtuMI	TCGCGA	1 cut(s)	312
BveI	ACCTGC	1 cut(s)	1812
CaiI	CAGNNNCTG	1 cut(s)	1979
CciI	TCATGA	4 cut(s)	1309, 1939, 3334, 3460
CciNI	GCGGCCGC	1 cut(s)	743
CfoI	GCGC	4 cut(s)	448, 519, 722, 952
Cfr10I	RCCGGY	6 cut(s)	185, 473, 522, 577, 608, 632
Cfr13I	GGNCC	3 cut(s)	1856, 2406, 2777
Cfr42I	CCGCGG	2 cut(s)	530, 749
CseI	GACGC	2 cut(s)	460, 478
Csp6I	GTAC	6 cut(s)	430, 780, 1890, 1971, 2157, 2562
CviQI	GTAC	6 cut(s)	430, 780, 1890, 1971, 2157, 2562
DdeI	CTNAG	8 cut(s)	618, 945, 1678, 1860, 2842, 2884, 3062, 3532
DpnI	GATC	9 cut(s)	149, 309, 363, 1064, 1413, 2106, 2138, 2680, 3159
DpnII	GATC	9 cut(s)	147, 307, 361, 1062, 1411, 2104, 2136, 2678, 3157
DraI	TTTAAA	1 cut(s)	3024
DraIII	CACNNNGTG	1 cut(s)	2958
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	7 cut(s)	3, 471, 520, 524, 743, 885, 3371
EagI	CGGCCG	4 cut(s)	471, 520, 524, 743
Eam1104I	CTCTTC	5 cut(s)	353, 722, 917, 1001, 1941
EarI	CTCTTC	5 cut(s)	353, 722, 917, 1001, 1941
EciI	GGCGGA	3 cut(s)	50, 172, 206
Ecl136II	GAGCTC	1 cut(s)	1033
EclXI	CGGCCG	4 cut(s)	471, 520, 524, 743
Eco130I	CCWWGG	1 cut(s)	2130
Eco24I	GRGCYC	2 cut(s)	1035, 2046
Eco32I	GATATC	1 cut(s)	1546
Eco47I	GGWCC	2 cut(s)	1856, 2777
Eco52I	CGGCCG	4 cut(s)	471, 520, 524, 743
Eco53kI	GAGCTC	1 cut(s)	1033
Eco57I	CTGAAG	1 cut(s)	1878
Eco88I	CYCGRG	1 cut(s)	503
EcoICRI	GAGCTC	1 cut(s)	1033
EcoO109I	RGGNCCY	1 cut(s)	2777
EcoRI	GAATTC	2 cut(s)	1585, 2148
EcoRII	CCWGG	4 cut(s)	2302, 2445, 2914, 3519
EcoRV	GATATC	1 cut(s)	1546
EcoT14I	CCWWGG	1 cut(s)	2130
EcoT22I	ATGCAT	2 cut(s)	883, 2500
EcoT38I	GRGCYC	2 cut(s)	1035, 2046
ErhI	CCWWGG	1 cut(s)	2130
FalI	AAGNNNNNCTT	4 cut(s)	332, 364, 690, 722
FaqI	GGGAC	5 cut(s)	29, 691, 998, 1450, 2855
FauI	CCCGC	3 cut(s)	218, 448, 715
FauNDI	CATATG	2 cut(s)	2482, 3322
FblI	GTMKAC	2 cut(s)	12, 54
FokI	GGATG	9 cut(s)	635, 767, 785, 842, 890, 1426, 2201, 2623, 2688
FriOI	GRGCYC	2 cut(s)	1035, 2046
FseI	GGCCGGCC	1 cut(s)	526
FspBI	CTAG	4 cut(s)	35, 999, 1278, 1770
GlaI	GCGC	4 cut(s)	447, 518, 721, 951
GsaI	CCCAGC	1 cut(s)	301
HapII	CCGG	9 cut(s)	186, 474, 486, 523, 560, 578, 609, 633, 3477
HgaI	GACGC	2 cut(s)	460, 478
HhaI	GCGC	4 cut(s)	448, 519, 722, 952
Hin1I	GRCGYC	4 cut(s)	375, 452, 489, 861
Hin6I	GCGC	4 cut(s)	446, 517, 720, 950
HinP1I	GCGC	4 cut(s)	446, 517, 720, 950
HincII	GTYRAC	3 cut(s)	13, 55, 1879
HindII	GTYRAC	3 cut(s)	13, 55, 1879
HpaII	CCGG	9 cut(s)	186, 474, 486, 523, 560, 578, 609, 633, 3477
HphI	GGTGA	5 cut(s)	61, 116, 808, 859, 1751
Hpy166II	GTNNAC	6 cut(s)	13, 55, 850, 856, 1879, 2726
Hpy8I	GTNNAC	6 cut(s)	13, 55, 850, 856, 1879, 2726
HpyCH4IV	ACGT	5 cut(s)	141, 375, 852, 861, 3087
HpyF3I	CTNAG	8 cut(s)	618, 945, 1678, 1860, 2842, 2884, 3062, 3532
HpySE526I	ACGT	5 cut(s)	141, 375, 852, 861, 3087
Hsp92I	GRCGYC	4 cut(s)	375, 452, 489, 861
HspAI	GCGC	4 cut(s)	446, 517, 720, 950
KroI	GCCGGC	3 cut(s)	185, 522, 608
KroNI	GCCGGC	3 cut(s)	187, 524, 610
KspI	CCGCGG	2 cut(s)	530, 749
Kzo9I	GATC	9 cut(s)	147, 307, 361, 1062, 1411, 2104, 2136, 2678, 3157
LguI	GCTCTTC	1 cut(s)	353
LmnI	GCTCC	9 cut(s)	170, 339, 662, 1331, 1603, 1739, 2962, 3185, 3473
Lsp1109I	GCAGC	8 cut(s)	201, 355, 577, 1310, 2112, 2685, 2724, 2977
LweI	GCATC	5 cut(s)	128, 868, 1385, 2507, 2710
MaeI	CTAG	4 cut(s)	35, 999, 1278, 1770
MaeII	ACGT	5 cut(s)	141, 375, 852, 861, 3087
MaeIII	GTNAC	3 cut(s)	653, 1847, 2755
MalI	GATC	9 cut(s)	149, 309, 363, 1064, 1413, 2106, 2138, 2680, 3159
MbiI	CCGCTC	2 cut(s)	165, 304
MboI	GATC	9 cut(s)	147, 307, 361, 1062, 1411, 2104, 2136, 2678, 3157
MfeI	CAATTG	2 cut(s)	1920, 2649
MflI	RGATCY	2 cut(s)	1411, 2678
MhlI	GDGCHC	3 cut(s)	1035, 1692, 2046
MlsI	TGGCCA	3 cut(s)	5, 887, 3373
MluNI	TGGCCA	3 cut(s)	5, 887, 3373
MlyI	GAGTC	5 cut(s)	32, 1855, 1940, 2877, 3325
MmeI	TCCRAC	5 cut(s)	381, 564, 918, 957, 1116
Mox20I	TGGCCA	3 cut(s)	5, 887, 3373
Mph1103I	ATGCAT	2 cut(s)	883, 2500
MroNI	GCCGGC	3 cut(s)	185, 522, 608
MroXI	GAANNNNTTC	1 cut(s)	2167
MscI	TGGCCA	3 cut(s)	5, 887, 3373
MslI	CAYNNNNRTG	2 cut(s)	422, 1218
Msp20I	TGGCCA	3 cut(s)	5, 887, 3373
MspA1I	CMGCKG	4 cut(s)	529, 572, 748, 3432
MspCI	CTTAAG	1 cut(s)	2546
MspI	CCGG	9 cut(s)	186, 474, 486, 523, 560, 578, 609, 633, 3477
MspR9I	CCNGG	4 cut(s)	2304, 2447, 2916, 3521
MunI	CAATTG	2 cut(s)	1920, 2649
Mva1269I	GAATGC	3 cut(s)	1269, 2743, 3486
MvaI	CCWGG	4 cut(s)	2304, 2447, 2916, 3521
MvnI	CGCG	6 cut(s)	312, 446, 519, 529, 722, 748
NaeI	GCCGGC	3 cut(s)	187, 524, 610
NcoI	CCATGG	1 cut(s)	2130
NdeI	CATATG	2 cut(s)	2482, 3322
NdeII	GATC	9 cut(s)	147, 307, 361, 1062, 1411, 2104, 2136, 2678, 3157
NgoMIV	GCCGGC	3 cut(s)	185, 522, 608
NlaIV	GGNNCC	5 cut(s)	478, 607, 1413, 3399, 3475
NmeAIII	GCCGAG	4 cut(s)	449, 738, 834, 1014
NmuCI	GTSAC	3 cut(s)	653, 1847, 2755
NotI	GCGGCCGC	1 cut(s)	743
NruI	TCGCGA	1 cut(s)	312
NsiI	ATGCAT	2 cut(s)	883, 2500
NspI	RCATGY	3 cut(s)	1995, 2360, 2498
NspV	TTCGAA	1 cut(s)	2152
OliI	CACNNNNGTG	1 cut(s)	422
PaeI	GCATGC	2 cut(s)	2360, 2498
PagI	TCATGA	4 cut(s)	1309, 1939, 3334, 3460
PciI	ACATGT	1 cut(s)	1991
PciSI	GCTCTTC	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	4 cut(s)	138, 165, 366, 858
PctI	GAATGC	3 cut(s)	1269, 2743, 3486
PdiI	GCCGGC	3 cut(s)	187, 524, 610
PdmI	GAANNNNTTC	1 cut(s)	2167
PflFI	GACNNNGTC	2 cut(s)	41, 374
PflMI	CCANNNNNTGG	1 cut(s)	2958
Ple19I	CGATCG	1 cut(s)	310
PleI	GAGTC	5 cut(s)	32, 1854, 1939, 2876, 3325
PpsI	GAGTC	5 cut(s)	32, 1854, 1939, 2876, 3325
PpuMI	RGGWCCY	1 cut(s)	2777
PscI	ACATGT	1 cut(s)	1991
PshBI	ATTAAT	1 cut(s)	2208
PsiI	TTATAA	1 cut(s)	1121
Psp124BI	GAGCTC	1 cut(s)	1035
Psp5II	RGGWCCY	1 cut(s)	2777
Psp6I	CCWGG	4 cut(s)	2302, 2445, 2914, 3519
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	4 cut(s)	2302, 2445, 2914, 3519
PspN4I	GGNNCC	5 cut(s)	478, 607, 1413, 3399, 3475
PspPI	GGNCC	3 cut(s)	1856, 2406, 2777
PspPPI	RGGWCCY	1 cut(s)	2777
PstNI	CAGNNNCTG	1 cut(s)	1979
PsuI	RGATCY	2 cut(s)	1411, 2678
PsyI	GACNNNGTC	2 cut(s)	41, 374
PvuI	CGATCG	1 cut(s)	310
PvuII	CAGCTG	1 cut(s)	3432
RigI	GGCCGGCC	1 cut(s)	526
RruI	TCGCGA	1 cut(s)	312
RsaI	GTAC	6 cut(s)	431, 781, 1891, 1972, 2158, 2563
RsaNI	GTAC	6 cut(s)	430, 780, 1890, 1971, 2157, 2562
RseI	CAYNNNNRTG	2 cut(s)	422, 1218
SacI	GAGCTC	1 cut(s)	1035
SacII	CCGCGG	2 cut(s)	530, 749
SalI	GTCGAC	2 cut(s)	11, 53
SapI	GCTCTTC	1 cut(s)	353
Sau3AI	GATC	9 cut(s)	147, 307, 361, 1062, 1411, 2104, 2136, 2678, 3157
Sau96I	GGNCC	3 cut(s)	1856, 2406, 2777
ScaI	AGTACT	2 cut(s)	1891, 2158
SchI	GAGTC	5 cut(s)	32, 1855, 1940, 2877, 3325
ScrFI	CCNGG	4 cut(s)	2304, 2447, 2916, 3521
SduI	GDGCHC	3 cut(s)	1035, 1692, 2046
SfaNI	GCATC	5 cut(s)	128, 868, 1385, 2507, 2710
SfcI	CTRYAG	2 cut(s)	1776, 3551
Sfr303I	CCGCGG	2 cut(s)	530, 749
SfuI	TTCGAA	1 cut(s)	2152
SgrBI	CCGCGG	2 cut(s)	530, 749
SgrDI	CGTCGACG	1 cut(s)	11
SinI	GGWCC	2 cut(s)	1856, 2777
SmiMI	CAYNNNNRTG	2 cut(s)	422, 1218
SmlI	CTYRAG	6 cut(s)	338, 1076, 2546, 2641, 2772, 3282
SmoI	CTYRAG	6 cut(s)	338, 1076, 2546, 2641, 2772, 3282
SpeI	ACTAGT	1 cut(s)	1277
SphI	GCATGC	2 cut(s)	2360, 2498
SspI	AATATT	3 cut(s)	1228, 1559, 1750
SspMI	CTAG	4 cut(s)	35, 999, 1278, 1770
SstI	GAGCTC	1 cut(s)	1035
StyD4I	CCNGG	4 cut(s)	2302, 2445, 2914, 3519
StyI	CCWWGG	1 cut(s)	2130
TaiI	ACGT	5 cut(s)	144, 378, 855, 864, 3090
TaqI	TCGA	9 cut(s)	12, 54, 132, 159, 306, 492, 1583, 2152, 3242
TatI	WGTACW	5 cut(s)	429, 779, 1889, 1970, 2156
TseFI	GTSAC	3 cut(s)	653, 1847, 2755
TseI	GCWGC	8 cut(s)	189, 343, 590, 1323, 2100, 2698, 2712, 2965
Tsp45I	GTSAC	3 cut(s)	653, 1847, 2755
TspGWI	ACGGA	3 cut(s)	31, 157, 526
Tth111I	GACNNNGTC	2 cut(s)	41, 374
Van91I	CCANNNNNTGG	1 cut(s)	2958
Vha464I	CTTAAG	1 cut(s)	2546
VpaK11BI	GGWCC	2 cut(s)	1856, 2777
VspI	ATTAAT	1 cut(s)	2208
XapI	RAATTY	6 cut(s)	1204, 1449, 1585, 2148, 2767, 2989
XceI	RCATGY	3 cut(s)	1995, 2360, 2498
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2230
XmiI	GTMKAC	2 cut(s)	12, 54
XmnI	GAANNNNTTC	1 cut(s)	2167
XspI	CTAG	4 cut(s)	35, 999, 1278, 1770
ZraI	GACGTC	2 cut(s)	376, 862
ZrmI	AGTACT	2 cut(s)	1891, 2158
Zsp2I	ATGCAT	2 cut(s)	883, 2500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.